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[jalview.git] / src / jalview / gui / SequenceFetcher.java

2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff
2016-08-30	Jim Procter	Merge branch 'develop' into merge/develop_bug/JAL-2154p... merge/develop_bug/JAL-2154projectMappings	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 simplified database tree actionPerformed,...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 removed redundant (overriden) add panel to...	blob \| commitdiff \| diff to current
2016-08-13	Jim Procter	JAL-2154 ignore all but the primary source resolved...	blob \| commitdiff \| diff to current
2016-08-13	Jim Procter	JAL-2154 make sure we wait for constructor thread to...	blob \| commitdiff \| diff to current
2016-08-11	Jim Procter	JAL-2154 jalview.gui.SequenceFetcher.fetchAndShow(db...	blob \| commitdiff \| diff to current
2016-08-11	Jim Procter	JAL-2154 JAL-1993 relocate show dbchooser action out...	blob \| commitdiff \| diff to current
2016-06-21	Jim Procter	Merge branch 'features/JAL-2110_crossRefDuplications...	blob \| commitdiff \| diff to current
2016-06-16	gmungoc	JAL-1993 close sequence fetcher when opening database...	blob \| commitdiff \| diff to current
2016-06-16	gmungoc	JAL-1993 hide sequence fetcher dialogue until database...	blob \| commitdiff \| diff to current
2016-06-03	gmungoc	JAL-2110 random stuff	blob \| commitdiff \| diff to current
2016-05-26	gmungoc	JAL-1993 open sequence fetcher tree on 'fetch sequences'	blob \| commitdiff \| diff to current
2016-05-03	gmungoc	JAL-2050 hide introns also when fetching Ensembl xrefs...	blob \| commitdiff \| diff to current
2016-04-29	tcofoegbu	merge	blob \| commitdiff \| diff to current
2016-04-29	gmungoc	JAL-2051 better checking of retrieved / duplicated...	blob \| commitdiff \| diff to current
2016-04-27	tcofoegbu	re-enabled new uniprot sequence fetcher on spike branch	blob \| commitdiff \| diff to current
2016-04-26	tcofoegbu	JAL-1563 reverted to old uniprot fetcher to enable...	blob \| commitdiff \| diff to current
2016-04-22	tcofoegbu	JAL-2071 further refactoring, optimisation, and house...	blob \| commitdiff \| diff to current
2016-04-19	tcofoegbu	JAL-2071 architectural improvement for Plugable Free...	blob \| commitdiff \| diff to current
2016-04-12	gmungoc	JAL-2050 only hide introns if exons are present! Remove...	blob \| commitdiff \| diff to current
2016-04-11	gmungoc	JAL-2051 fetch Ensembl Gene accessions one at a time	blob \| commitdiff \| diff to current
2016-04-11	gmungoc	JAL-1705 (new preference option to) hide introns when...	blob \| commitdiff \| diff to current
2016-03-15	gmungoc	JAL-2016 FeatureSettingsI now FeatureSettingsModelI	blob \| commitdiff \| diff to current
2016-02-22	gmungoc	JAL-1705 first pass at applying preset feature colourin...	blob \| commitdiff \| diff to current
2016-02-19	gmungoc	JAL-1705 more lenient test for 'sequence retrieved'	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-1705 various refactoring towards Uniprot-to-Ensembl...	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	Merge branch 'develop' into JAL-1705_trialMerge	blob \| commitdiff \| diff to current
2016-01-08	gmungoc	JAL-1705 DbSourceProxy properties converted to methods...	blob \| commitdiff \| diff to current
2016-01-05	gmungoc	Merge remote-tracking branch 'origin/features/JAL-1705_...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	Merge branch 'develop' into features/JAL-1705_ensembl	blob \| commitdiff \| diff to current
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDB...	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-13	tcofoegbu	JAL-1826 bug fix to select pdb sequence fetcher via...	blob \| commitdiff \| diff to current
2015-06-28	Jim Procter	JAL-1705 refactored code for dbsource reggae validator...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	Clear status bar message when initialisation complete	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-15	Charles Ofoegbu	JAL-1667 updated test and internationalization messages	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-04	Charles Ofoegbu	JAL-1668 First version JAL-1668	blob \| commitdiff \| diff to current
2015-03-02	Charles Ofoegbu	house keeping	blob \| commitdiff \| diff to current
2015-02-26	Charles Ofoegbu	JAL-1667 PDBe Search Interface implementation	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-26	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-04	jprocter	Merge branch 'develop' into Release_2_8_Branch	blob \| commitdiff \| diff to current
2012-10-04	jprocter	JAL-1064 JAL-671 make sure all buttons are disabled...	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-02	jprocter	JAL-1062 use matching region or first section of sequen...	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	JAL-1097 - ensure replace comma for semicolon always...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	JAL-1061,JAL-1075 - first pass at implementing sequence...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	clean up old commented code	blob \| commitdiff \| diff to current
2012-04-20	jprocter	JAL-1064 JAL-671 - add tree based database dialog as...	blob \| commitdiff \| diff to current
2012-03-30	jprocter	Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...	blob \| commitdiff \| diff to current
2012-02-29	jprocter	tidy imports and switch over to use das source registry API	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	blob \| commitdiff \| diff to current
2011-08-17	jprocter	avoid NPE race condition when several threads waiting...	blob \| commitdiff \| diff to current
2011-07-08	jprocter	open each query result from an alignment datasource...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-22	jprocter	Fix and documentation for JAL-657	blob \| commitdiff \| diff to current
2010-09-19	jprocter	make sure only one sequence datasource initialization...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	catch OOM earlier * JAL-595	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-24	jprocter	can use whitespace, comma or semicolon to separate IDs	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-01-07	jprocter	check for features on the retrieved sequences	blob \| commitdiff \| diff to current
2008-12-05	jprocter	support for multiple accession retrieval from a databas...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-26	jprocter	added singleton access method to retrieve the latest...	blob \| commitdiff \| diff to current
2008-08-15	jprocter	dialog size on macs	blob \| commitdiff \| diff to current
2008-08-15	jprocter	increase height of dialog	blob \| commitdiff \| diff to current
2008-08-05	jprocter	ensure das sequence sources are refreshed when das...	blob \| commitdiff \| diff to current
2008-08-04	jprocter	pfam seed and full alignment retrieval and nicer orderi...	blob \| commitdiff \| diff to current
2008-08-01	jprocter	new SequenceFetcher gui and visual delay indication...	blob \| commitdiff \| diff to current
2008-07-31	jprocter	use canonical DbSource name in GUI box, and ensure...	blob \| commitdiff \| diff to current
2007-12-21	jprocter	sequence db fetcher metadata for multiple sequence...	blob \| commitdiff \| diff to current
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