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file format enum wip changes
[jalview.git] / test / jalview / analysis / AlignmentUtilsTests.java
2016-07-11 gmungocfile format enum wip changes blob | commitdiff
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature... blob | commitdiff | diff to current
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... blob | commitdiff | diff to current
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer... blob | commitdiff | diff to current
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... blob | commitdiff | diff to current
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... blob | commitdiff | diff to current
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... blob | commitdiff | diff to current
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot blob | commitdiff | diff to current
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset blob | commitdiff | diff to current
2016-03-03 gmungocJAL-1705 unit test for aligning with incomplete start... blob | commitdiff | diff to current
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts blob | commitdiff | diff to current
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... blob | commitdiff | diff to current
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge blob | commitdiff | diff to current
2016-01-21 gmungocJAL-1705 features transferred to CDS sequence; makeExon... blob | commitdiff | diff to current
2016-01-05 gmungocJAL-653 updating 'align as' tests to match latest tweak... blob | commitdiff | diff to current
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... blob | commitdiff | diff to current
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... blob | commitdiff | diff to current
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... blob | commitdiff | diff to current
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... blob | commitdiff | diff to current
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... blob | commitdiff | diff to current
2015-08-17 gmungocJAL-1270 testIsMappable added blob | commitdiff | diff to current
2015-07-08 gmungocJAL-1759 merge from develop blob | commitdiff | diff to current
2015-07-07 tcofoegbuJAL-1805 test envirionment separation blob | commitdiff | diff to current
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring blob | commitdiff | diff to current
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... blob | commitdiff | diff to current
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... blob | commitdiff | diff to current
2015-04-21 gmungocJAL-1693 mappings added back to the original alignment blob | commitdiff | diff to current
2015-04-14 gmungocJAL-1693 generate multiple exon sequences for 1-many... blob | commitdiff | diff to current
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... blob | commitdiff | diff to current
2015-03-30 gmungocJAL-1264 remove broken applet build dependencies blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that... blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the... blob | commitdiff | diff to current