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JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files
[jalview.git] / test / jalview / io / StockholmFileTest.java
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... blob | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 blob | commitdiff | diff to current
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs() blob | commitdiff | diff to current
2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflec... blob | commitdiff | diff to current
2020-03-06 Ben SoaresJAL-3529 improved regex in Stockholm UNIPROT accession... blob | commitdiff | diff to current
2020-02-18 Jim ProcterJAL-3529 test for AC <Uniprot/EMBL> rather than DR... blob | commitdiff | diff to current
2020-02-18 Jim ProcterJAL-3529 assert Uniprot refs must be provided as primar... blob | commitdiff | diff to current
2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace... blob | commitdiff | diff to current
2020-02-14 Jim ProcterJAL-3529 failing test for bug blob | commitdiff | diff to current
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... blob | commitdiff | diff to current
2018-08-03 Ben SoaresJAL-3061 blob | commitdiff | diff to current
2018-08-02 Ben SoaresJAL-3053 blob | commitdiff | diff to current
2018-07-31 bsoaresStockholm file for test blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures blob | commitdiff | diff to current
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... blob | commitdiff | diff to current
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... blob | commitdiff | diff to current
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... blob | commitdiff | diff to current
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... blob | commitdiff | diff to current
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... blob | commitdiff | diff to current
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter blob | commitdiff | diff to current
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... blob | commitdiff | diff to current
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... blob | commitdiff | diff to current
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... blob | commitdiff | diff to current
2016-11-28 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 format tests blob | commitdiff | diff to current
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used... blob | commitdiff | diff to current
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... blob | commitdiff | diff to current
2015-07-08 gmungocJAL-1759 merge from develop blob | commitdiff | diff to current
2015-07-07 tcofoegbuJAL-1805 test envirionment separation blob | commitdiff | diff to current
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-1270 fix logic in stockholm test allowing annotatio... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring blob | commitdiff | diff to current
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw... blob | commitdiff | diff to current
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw... blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annot... blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-06-21 Jim ProcterJAL-1325 formatting blob | commitdiff | diff to current
2013-06-21 Jim ProcterJAL-1294 JAL-1325 test annotation threshold line equiva... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1295 relaxed test for Annotation element equivalenc... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1295 JAL-1296 clearer assertion failed message blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1295 JAL-1297 enhance test to check graph visiblity... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1297 JAL-1295 JAL-1294 improve test logic for compa... blob | commitdiff | diff to current
2013-05-21 Jim Proctersplit test for general Stockholm IO consistency (JAL... JAL-1199-Stk_writing blob | commitdiff | diff to current
2013-05-21 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class blob | commitdiff | diff to current
2013-05-21 Jim Procterformatting blob | commitdiff | diff to current
2013-05-21 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi... blob | commitdiff | diff to current
2013-02-15 Jim Proctersplit test for general Stockholm IO consistency (JAL... blob | commitdiff | diff to current
2013-02-15 Jim ProcterJAL-1199 JAL-1272 remove main() method from test class blob | commitdiff | diff to current
2013-02-15 Jim Procterformatting blob | commitdiff | diff to current
2013-02-15 Jim ProcterJAL-1199 JAL-1272 refactored Natasha's test to a generi... blob | commitdiff | diff to current
2013-02-06 jprocterJAL-1199 added test for Rfam Stockholm file example blob | commitdiff | diff to current
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class... blob | commitdiff | diff to current