JAL-2446 optimised new method to find feature colour for overview
[jalview.git] / src / MCview / PDBfile.java
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this...
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame...
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit...
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string...
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct...
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check...
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-21 Jim ProcterJAL-674 check for null vector before ...
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by...
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation...
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not...
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio...
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created...
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
2014-10-10 Jim ProcterJAL-674 typo
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating...
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure...
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc
2014-09-26 darolmarJAL-1355
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-15 Jim Procterworkaround for JAL-1395
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-09 Jim ProcterJAL-674 avoid runtime dependency on annotate3d webservi...
2013-05-21 Jim ProcterJAL-1140 JAL-674 process with annotate3d and Jmol to...
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2013-02-13 jprocterJAL-1214 todo
2013-02-13 jprocterJAL-674 commented out annotate3d calling code for Jmol...
2013-02-13 jprocterJAL-1028 JAL-674 hooks to call external processing...
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-12-04 jprocterJAL-1214 todo
2012-12-04 jprocterJAL-674 commented out annotate3d calling code for Jmol...
2012-12-04 jprocterJAL-1028 JAL-674 hooks to call external processing...
2012-12-04 jprocterJAL-1028 tidy and refactor external processing and...
2012-11-19 jprocterbugfix
2012-11-17 jprocterreturn annotated rna sequences from rnaml returned...
2012-11-17 jprocterstore chainid on pdbentry
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-16 Anne MenardLast version
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-01-06 jprocterJAL-730
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-10-30 jprocterna pdb: detect P backbone
2009-10-12 jprocterensure id string doesn't get set to the empty string...
2009-06-08 jprocterpatch for wierd format header lines and apply gpl devel...
2008-09-04 jproctermerge from 2_4_Release branch
2008-01-29 jprocterFileParse object can be re-used to read different files...
2007-06-17 jprocterfix modeller generated PDB file reading bug (missing...
2007-04-20 jprocteradds annotation for display (with flag to set alignment...
2007-02-07 amwaterhouseformatting
2007-01-19 jprocterPDBChain maintains reference to dataset of sequences...
2007-01-18 jproctertransfer and update of sequenceFeatures for associated...
2006-11-20 amwaterhouseMemory check on PDB file
2006-08-21 amwaterhouseheader updated
2006-08-11 amwaterhouseinFile might be null if PDB was pasted
2006-07-26 amwaterhousePDB file MUST have an id
2006-07-25 amwaterhouseExtends AlignFile, dataset has PDBEntry added
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