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Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892' into features/JAL-653_JAL...
[jalview.git]
/
src
/
MCview
/
PDBfile.java
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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commitdiff
2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
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diff to current
2015-06-08
gmungoc
JAl-1421 fix method reflection argument (properly this...
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diff to current
2015-06-08
gmungoc
JAL-1421 undid premature 'improvement' of method parame...
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diff to current
2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
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diff to current
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
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diff to current
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
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diff to current
2014-11-26
Jim Procter
JAL-674 employ the provided DNA/Protein matrix string...
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diff to current
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
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diff to current
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
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diff to current
2014-10-30
Jim Procter
JAL-674 hang on to sequences created by secondary parsi...
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commitdiff
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diff to current
2014-10-30
Jim Procter
JAL-1551 format and tidy
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diff to current
2014-10-21
Jim Procter
JAL-674 check for null vector before ...
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diff to current
2014-10-21
Jim Procter
JAL-674 remove any spurious PDBEntrys generated by...
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diff to current
2014-10-21
Jim Procter
JAL-674 methods and test for PDB derived annotation...
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diff to current
2014-10-21
Jim Procter
JAL-674 store ID in MCview.PDBfile calcId string, not...
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diff to current
2014-10-21
Jim Procter
JAL-674 test for presence of annotation derived from...
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commitdiff
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diff to current
2014-10-21
Jim Procter
JAL-1551 formatting
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diff to current
2014-10-21
Jim Procter
JAL-674 refactor method to match and transfer annotatio...
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diff to current
2014-10-15
Jim Procter
JAL-674 support preservation of any annotation created...
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diff to current
2014-10-15
Jim Procter
JAL-674 make transferAnnotation method static
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diff to current
2014-10-10
Jim Procter
JAL-674 typo
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diff to current
2014-10-10
Jim Procter
JAL-674 new constructors to pass flags about annotating...
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commitdiff
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diff to current
2014-10-10
Jim Procter
JAL-674 parser flag to control secondary structure...
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commitdiff
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diff to current
2014-10-06
Jim Procter
JAL-654_dssp formatting and javadoc
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diff to current
2014-09-26
darolmar
JAL-1355
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diff to current
2014-09-23
darolmar
JAL-1355
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-10-15
Jim Procter
workaround for JAL-1395
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commitdiff
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diff to current
2013-06-09
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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diff to current
2013-06-09
Jim Procter
JAL-674 avoid runtime dependency on annotate3d webservi...
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diff to current
2013-05-21
Jim Procter
JAL-1140 JAL-674 process with annotate3d and Jmol to...
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diff to current
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
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commitdiff
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diff to current
2013-02-13
jprocter
JAL-1214 todo
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diff to current
2013-02-13
jprocter
JAL-674 commented out annotate3d calling code for Jmol...
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diff to current
2013-02-13
jprocter
JAL-1028 JAL-674 hooks to call external processing...
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diff to current
2012-12-07
jprocter
proxy commit for Anne Menard <menard.annec@gmail.com...
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diff to current
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-1214 todo
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-674 commented out annotate3d calling code for Jmol...
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-1028 JAL-674 hooks to call external processing...
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-1028 tidy and refactor external processing and...
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commitdiff
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diff to current
2012-11-19
jprocter
bugfix
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diff to current
2012-11-17
jprocter
return annotated rna sequences from rnaml returned...
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commitdiff
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diff to current
2012-11-17
jprocter
store chainid on pdbentry
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-08-14
Anne Menard
last version stay many bugs ..
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commitdiff
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diff to current
2012-07-16
Anne Menard
Last version
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commitdiff
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diff to current
2012-07-10
Anne Menard
v2
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commitdiff
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diff to current
2012-07-05
Anne Menard
Add support RNAML format
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-01-06
jprocter
JAL-730
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2009-10-30
jprocter
na pdb: detect P backbone
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commitdiff
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diff to current
2009-10-12
jprocter
ensure id string doesn't get set to the empty string...
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commitdiff
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diff to current
2009-06-08
jprocter
patch for wierd format header lines and apply gpl devel...
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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diff to current
2008-01-29
jprocter
FileParse object can be re-used to read different files...
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commitdiff
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diff to current
2007-06-17
jprocter
fix modeller generated PDB file reading bug (missing...
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diff to current
2007-04-20
jprocter
adds annotation for display (with flag to set alignment...
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commitdiff
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diff to current
2007-02-07
amwaterhouse
formatting
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diff to current
2007-01-19
jprocter
PDBChain maintains reference to dataset of sequences...
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diff to current
2007-01-18
jprocter
transfer and update of sequenceFeatures for associated...
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diff to current
2006-11-20
amwaterhouse
Memory check on PDB file
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diff to current
2006-08-21
amwaterhouse
header updated
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diff to current
2006-08-11
amwaterhouse
inFile might be null if PDB was pasted
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diff to current
2006-07-26
amwaterhouse
PDB file MUST have an id
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diff to current
2006-07-25
amwaterhouse
Extends AlignFile, dataset has PDBEntry added
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commitdiff
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diff to current
2006-03-08
amwaterhouse
Can read from zip file
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commitdiff
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diff to current
2005-12-09
amwaterhouse
All colours added to Structure viewer
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commitdiff
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diff to current
2005-12-06
amwaterhouse
PDB structure viewer updated
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commitdiff
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diff to current
2005-09-30
amwaterhouse
Remove redundancy from Eclipse
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commitdiff
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diff to current
2005-06-08
amwaterhouse
Formatted source
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commitdiff
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diff to current
2005-06-08
amwaterhouse
GPL license added
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commitdiff
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diff to current
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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diff to current
2005-05-05
amwaterhouse
addelement replaces add
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diff to current
2005-03-23
amwaterhouse
drawableSequence removed
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diff to current
2005-02-04
amwaterhouse
SequenceFeature display added
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diff to current
2004-11-18
amwaterhouse
New files
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diff to current