JAL-2416 JAL-2403 remove unused '*' row/column from score matrices
[jalview.git] / src / jalview / appletgui / AlignViewport.java
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand...
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-28 jprocterJAL-902 structure conservation row for applet
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-08-15 jprocterJAL-750 - automaticScrolling=true by default. Refactore...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-04 jproctergroup associated annotation and logos JAL-516 JAL-759
2011-01-18 jprocterrefactored VamsasListener to allow the source of the...
2011-01-17 jprocterJAL-750 and JAL-451
2011-01-12 jprocterjavascript callback for selection, mousover, and functi...
2010-12-09 jprocterrefactored and added methods for getting richer Alignme...
2010-11-12 jprocterpatch for JAL-699 so conservation/consensus threads...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-06 jprocterpatch for JAL-542
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocternew selection manipulation method
2010-04-28 jproctermake groups from selection
2010-04-26 jprocternew applet parameters: heightScale and widthScale
2010-04-23 jprocterported basic elements of logo and group annotation...
2010-04-01 jproctertodo
2009-06-08 jprocterapply gpl development license
2009-03-17 jproctersortbytree parameter added and undo re-instated for...
2009-02-06 jproctershowUnconserved and updated reference
2008-11-12 jprocterautomatic scrolling option added to view
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2007-10-26 jprocteruse new utility class for platform info
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-05-03 amwaterhouseoptimize repaints
2007-04-18 amwaterhousehastext = false
2007-04-18 amwaterhousequality has text false
2007-04-17 jprocterbugfix for jalviewApplet run from command line.
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-12-05 amwaterhousesequence is char []
2006-11-24 amwaterhouseInvert col sel with hidden cols bug fixed
2006-11-14 amwaterhouseCommands, history, consensus, refresh updated
2006-11-13 amwaterhouseColours in viewport
2006-10-10 amwaterhouseUse AAFrequency final keys
2006-10-09 jprocterset firstColumn property for an alignmentView object.
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