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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignViewport.java
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
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commitdiff
2020-10-21
Mateusz Warowny
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager
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diff to current
2020-06-09
BobHanson
JAL-3446 from applet; JAL-3374
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2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
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diff to current
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
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2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
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diff to current
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
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diff to current
2019-04-18
hansonr
Corrects incorrect calls to ViewportRanges.setEndSeq()
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2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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2019-01-21
hansonr
removing indirect references to Platform.isAMac()
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2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
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2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
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2018-03-01
gmungoc
JAL-2629 revising hmmer annotation updating (wip)
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2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-14
gmungoc
JAL-2727 null more fields in AlignmentViewport.dispose...
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
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2017-08-02
TZVanaalten
JAL-2599 fix for information annotation buttons
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2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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2017-07-14
TZVanaalten
add partial button fix to annotation and statistics...
features/hmmer_statistics
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2017-06-30
gmungoc
JAL-2602 pulled up identical methods to base class
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2017-06-30
gmungoc
JAL-2602 same fix for applet
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
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2017-05-12
kiramt
JAL-2491 Renamed comp scrolling flag for consistency...
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commitdiff
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2017-05-11
kiramt
JAL-2491 First port to applet
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2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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2017-05-05
kiramt
Merge remote-tracking branch
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2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
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2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
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2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
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2017-04-24
kiramt
Merge remote-tracking branch
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-03-30
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
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2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-03-21
kiramt
JAL-2388 Made ViewportRanges final
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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2017-03-16
kiramt
JAL-2388 Renamed viewport position props to viewport...
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2017-03-15
kiramt
JAL-2388 Unit tests and tidies
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2017-03-08
gmungoc
JAL-2435 copy font changes across split screen
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2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
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2017-02-27
kiramt
JAL-2388 Make startRes,startSeq,endRes,endSeq private...
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2017-02-14
kiramt
JAL-2388 Removed unnecessary CommandListener interface...
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2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
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2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
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2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
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2016-10-28
Jim Procter
JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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diff to current
2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
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2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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diff to current
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-10-05
gmungoc
JAL-1684 JAL-1452 new applet parameters defaultColourNuc
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-06-22
Jim Procter
JAL-653 JAL-1780 dropped unnecessary refs
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2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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2015-06-17
tcofoegbu
JAL-1780 more support for export setting for flatfile...
features/JAL-1780_export-settings_flatfile
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diff to current
2015-06-10
tcofoegbu
JAL-1641 updated applet version
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2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
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2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
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2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
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2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
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2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-05-01
Jim Procter
JAL-969 remove unnecessary overrides
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2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-10-07
Jim Procter
JAL-1385 JAL-535 refactor sequence colour settings...
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commitdiff
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2012-11-08
jprocter
tidy imports
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-09-24
jprocter
JAL-958 revised applet parameter documentation to stand...
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2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
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diff to current
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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2011-10-28
jprocter
JAL-969 - refactor initialisation of automatic annotati...
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2011-10-28
jprocter
JAL-902 structure conservation row for applet
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