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JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label...
[jalview.git] / src / jalview / bin /
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied tree | commitdiff
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties tree | commitdiff
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings tree | commitdiff
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... tree | commitdiff
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop tree | commitdiff
2016-07-20 Jim ProcterJAL-1926 JAL-2106 don’t use PDB database constant as... tree | commitdiff
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... tree | commitdiff
2016-07-12 gmungocFileFormat enum wip changes tree | commitdiff
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into... tree | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... tree | commitdiff
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy tree | commitdiff
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look... tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 disable security manager at start up re: lopic... tree | commitdiff
2016-04-04 Jim ProcterJAL-1551 formatting tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 - note about possible side effect on JalviewLi... tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local... tree | commitdiff
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe... tree | commitdiff
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils... tree | commitdiff
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option tree | commitdiff
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as... tree | commitdiff
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase tree | commitdiff
2015-09-15 gmungocJAL-1859 refactoring / debugging added tree | commitdiff
2015-09-14 gmungocJAL-1684 align added alignment to match original in... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-09 gmungocJAL-857 added debug output to track down document base... tree | commitdiff
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true... tree | commitdiff
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the... tree | commitdiff
2015-08-24 gmungocJAL-845 error message on syserr if supplied files don... tree | commitdiff
2015-08-11 tcofoegbuadd ability to launch jalview from exported html +... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-13 tcofoegbuJAL-1788 added help documentation for biojson tree | commitdiff
2015-07-10 tcofoegbuJAL-1759 code fix to enable testng ant task compile... tree | commitdiff
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created... tree | commitdiff
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... tree | commitdiff
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-26 gmungocJAL-1688 compiler warnings removed tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-05 Charles Ofoegbumerge commit tree | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... tree | commitdiff
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... tree | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... tree | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 output installation type to stdout tree | commitdiff
2014-11-28 Jim ProcterJAL-1522 remove build/deployment details imported from... tree | commitdiff
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity tree | commitdiff
2014-11-21 gmungocMerge branch 'Release_2_8_2_Branch' of https://source... tree | commitdiff
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> tree | commitdiff
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... tree | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ... tree | commitdiff
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... tree | commitdiff
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of... tree | commitdiff
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... tree | commitdiff
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation... tree | commitdiff
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... tree | commitdiff
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
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