JAL-3949 fixed failing commandlinetests due to more output and line count limit
[jalview.git] / src / jalview / datamodel / SequenceFeature.java
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to...
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to...
2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
2020-04-16 gmungocJAL-3567 adjust layout of linked feature report, unit...
2020-04-16 gmungocJAL-3567 added 'imputed by Jalview' to protein conseque...
2020-04-16 gmungocJAL-3567 report mapped location for virtual features...
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued...
2019-06-17 gmungocJAL-2792 JAL-3187 linked features (if shown) in Feature...
2019-06-17 gmungocJAL-3187 add sequence to feature details table (and...
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-08-02 Ben SoaresJAL-3053
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for...
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes description...
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-11-02 gmungocJAL-2808 convenience method to get attribute as String
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-27 gmungocJAL-2792 include source in copy constructor; null point...
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature...
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-30 gmungocJAL-2505 correct handling of change of feature type
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-05 gmungocJAL-2505 comments updated
2017-06-05 gmungocJAL-2505 explicit (and final) contactFeature property
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-25 gmungocJAL-2505 simplifying number of SequenceFeature construc...
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature...
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end...
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final...
2017-05-04 gmungocJAL-2480 JAL-2505 guard against duplicating links
2017-04-05 gmungocJAL-2446 method isNonPositional() added
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress
2016-11-17 gmungocJAL-2327 add isContactFeature
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN...
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature...
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib...
2016-04-14 gmungocJAL-2049 small refactor of constructors to avoid code...
2016-03-28 gmungocJAL-1705 Javadoc / debug output tweaks
2016-02-12 gmungocJAL-1705 JAL-1686 stronger SequenceFeature.equals(...
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence...
2015-12-22 gmungocJAL-653 encapsulate Strand, Attributes, Status of Seque...
2015-11-30 gmungocJAL-653 getStrand javadoc/refactor/test
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-07-13 jprocterbugfix
2007-03-23 jprocterbugfix for 1.1 conversion.
2007-02-07 amwaterhouseFormatting
2007-01-31 amwaterhousecopy feature: check for null values
2007-01-19 jprocterjavadoc
2007-01-19 jprocteradded sequence feature copy constructor.
2006-08-21 amwaterhouseheader updated
2006-08-09 amwaterhouseSave links and scores and keyValues for features
2006-06-15 amwaterhouseMaintain status and position only for uniprot parsing
2006-06-14 amwaterhouseStatus is now in otherData of feature
2006-06-09 amwaterhouseotherDetails
2006-06-07 amwaterhouseRemove position, add score and links
2006-03-24 amwaterhouseFeaturesGroup added to constructor
2006-02-24 amwaterhouseMake variable public for speed of rendering
2006-02-15 amwaterhouseFeatureGroups added
2005-12-06 amwaterhouseafter merge
2005-06-30 amwaterhouseFormatting changes
2005-06-10 amwaterhouseremove imports
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
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