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[jalview.git] / src / jalview / gui / PCAPanel.java

2023-01-30	Jim Procter	Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_over...	blob \| commitdiff
2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff \| diff to current
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-04-05	Mateusz Warowny	JAL-3878 Introduce IProgressIndicator#addProgressBar	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-11-13	Mateusz Waronwy	JAL-3690 separate startup and poll code in SeqAnnotatio...	blob \| commitdiff \| diff to current
2020-08-13	gmungoc	JAL-3597 additional references nulled, bug in test...	blob \| commitdiff \| diff to current
2020-07-14	gmungoc	JAL-3597 additional references nulled, bug in test...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet web page embedding	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-20	Ben Soares	JAL-3130 Lots of deprecation fixes. See utils/deprecat...	blob \| commitdiff \| diff to current
2019-03-14	gmungoc	JAL-3210 relocate setMinimumSize so it works in JS	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-01-15	Jim Procter	JAL-1767 refactor associated view logic to public metho...	blob \| commitdiff \| diff to current
2018-12-20	Jim Procter	JAL-1767 port save/load PCA panel to JAXB - JAL-3063	blob \| commitdiff \| diff to current
2018-12-19	Jim Procter	Merge branch 'features/JAL-1767pcaInProject' into bug...	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3048 all image export (alignment, tree, PCA, Jmol...	blob \| commitdiff \| diff to current
2018-07-05	gmungoc	JAL-3058 refactored raising JColorChooser for JS compat...	blob \| commitdiff \| diff to current
2018-05-07	gmungoc	JAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject	blob \| commitdiff \| diff to current
2018-05-07	gmungoc	JAL-2982 use configured background colour in PCA image...	blob \| commitdiff \| diff to current
2018-05-07	gmungoc	JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...	blob \| commitdiff \| diff to current
2018-05-04	gmungoc	JAL-1767 refactorings to enable faithful restore of...	blob \| commitdiff \| diff to current
2018-04-27	gmungoc	JAL-1767 refactoring and tidying of RotatableCanvas...	blob \| commitdiff \| diff to current
2018-04-26	gmungoc	JAL-2962 rename run method (as not a Runnable)	blob \| commitdiff \| diff to current
2018-04-26	gmungoc	JAL-2962 remove Change Parameters menu from PCA panel	blob \| commitdiff \| diff to current
2018-04-24	gmungoc	JAL-2959 no Print dialog shown if Page Format is Cancelled	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 method to check if PCAPanel thread is working	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-04	Jim Procter	Merge branch 'features/JAL-2393customMatrices' into...	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2499 JAL-2403 push 'configure for view' inside...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-04-12	gmungoc	JAL-1632 remove unused check for sequences aligned	blob \| commitdiff \| diff to current
2017-04-10	tcofoegbu	JAL-2473 added improvement to apply default / custom...	blob \| commitdiff \| diff to current
2017-04-07	gmungoc	JAL-2393 code tidying for review comments	blob \| commitdiff \| diff to current
2017-03-27	gmungoc	JAL-2416 add score model description field for tooltip...	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 dialog to calculate either Tree or PCA	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 add score model params to PCAModel and PCA...	blob \| commitdiff \| diff to current
2017-02-23	gmungoc	JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...	blob \| commitdiff \| diff to current
2017-02-20	gmungoc	JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...	blob \| commitdiff \| diff to current
2017-02-13	gmungoc	JAL-1632 JAL-2416 load score matrices from file, as...	blob \| commitdiff \| diff to current
2017-01-17	gmungoc	Merge branch 'develop' into features/JAL-2360colourSche...	blob \| commitdiff \| diff to current
2017-01-12	gmungoc	JAL-2379 null references to PCA model when panel is...	blob \| commitdiff \| diff to current
2016-12-12	gmungoc	JAL-1544 backgroud -> background	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-08-24	gmungoc	JAL-1424 corrected Message bundle lookup key	blob \| commitdiff \| diff to current
2016-06-19	Jim Procter	JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-05-29	gmungoc	JAL-1753 declare field with interface type; check for...	blob \| commitdiff \| diff to current
2015-05-29	gmungoc	JAL-1753 duplicated code refactored to new class Progre...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-19	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-03	Jim Procter	JAL-1473 exclude score models not compatible with PCA...	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 define defaults for DNA/Protein PCA calculation	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1485 JAL-1483 show i18n key for different available...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 show available score matrices for use in PCA...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	blob \| commitdiff \| diff to current
2012-06-15	jprocter	formatting	blob \| commitdiff \| diff to current
2012-06-15	jprocter	JAL-1125 option to switch between Jalview and SeqSpace...	blob \| commitdiff \| diff to current
2012-06-15	jprocter	JAL-535 refactored core code from PCA viewer to viewmodel.	blob \| commitdiff \| diff to current
2012-06-15	jprocter	JAL-1120 patch for desktop	blob \| commitdiff \| diff to current
2012-06-15	jprocter	patch for JAL-1121 - reset button and slightly wider...	blob \| commitdiff \| diff to current
2012-06-15	jprocter	Merge branch 'JAL-1013_pca_rna_dna' into develop	blob \| commitdiff \| diff to current
2011-12-14	jprocter	JAL-1033, JAL-1013 - ensure pca window shown only after...	blob \| commitdiff \| diff to current
2011-12-14	jprocter	JAL-1013 - rename nucleotide and ensure current calcula...	blob \| commitdiff \| diff to current
2011-12-13	jprocter	JAL-1013 - toy menu to switch between nucleotide and...	blob \| commitdiff \| diff to current
2011-12-08	jprocter	(JAL-1013) specify sequence type to ensure PCA calculat...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
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