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[jalview.git] / src / jalview / gui / TreePanel.java

2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff
2017-10-26	Jim Procter	JAL-2488 patch causes of NPE during testStoreAndRecover...	blob \| commitdiff
2017-10-26	Jim Procter	Merge branch 'feature/JAL-2488finalize' into develop	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-01	gmungoc	JAL-2216 remove alignment listener when Tree Panel...	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2490 lookup sequence features for "labelClass"	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2499 inlined two 1-line methods	blob \| commitdiff \| diff to current
2017-05-02	gmungoc	JAL-2499 JAL-2403 push 'configure for view' inside...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-04-21	gmungoc	JAL-2423 tweak tree panel title, add Spanish text	blob \| commitdiff \| diff to current
2017-03-24	gmungoc	JAL-2428 simplify TreeModel constructors, add getOrigin...	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 similarity options on TreeChooser panel affect...	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 refactored NJTree constructor to include Simil...	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-2403 JAL-838 remove unused methods and unneeded...	blob \| commitdiff \| diff to current
2017-02-23	gmungoc	JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...	blob \| commitdiff \| diff to current
2017-02-20	gmungoc	JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix...	blob \| commitdiff \| diff to current
2017-02-17	gmungoc	JAL-2423 refactored method to build panel title for...	blob \| commitdiff \| diff to current
2017-02-17	gmungoc	JAL-2403 constants for "NJ", "AV"	blob \| commitdiff \| diff to current
2017-02-13	gmungoc	JAL-1632 JAL-2416 load score matrices from file, as...	blob \| commitdiff \| diff to current
2017-01-25	gmungoc	JAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...	blob \| commitdiff \| diff to current
2016-12-07	gmungoc	JAL-2344 handle null format, simplify JalviewFileChoose...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-06-19	Jim Procter	JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...	blob \| commitdiff \| diff to current
2016-05-26	tcofoegbu	JAL-1911 improvement to bugfix - do not save i18n text...	blob \| commitdiff \| diff to current
2016-05-26	tcofoegbu	JAL-1911 bugfix - do not save i18n text in preference...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDB...	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-06	Jim Procter	JAL-1645 JAL-1355 UI/i18n: added missing messages,...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-07	Jim Procter	JAL-1483 refactor NJTree constructor to allow preconfig...	blob \| commitdiff \| diff to current
2015-01-07	Jim Procter	JAL-1483 organise imports	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-27	jprocter	JAL-1030 patch typo	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	blob \| commitdiff \| diff to current
2012-08-03	jprocter	JAL-1115 reference to List<SequenceI> passed in 'alignm...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	property change race condition (bug 0062693) and isAlig...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-06-01	jprocter	prototype function for relabelling treenodes with diffe...	blob \| commitdiff \| diff to current
2009-03-17	jprocter	sortbytree view setting and action added - setting...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-13	jprocter	check for null viewport on dataset recovery	blob \| commitdiff \| diff to current
2008-08-13	jprocter	ensure input data can be recovered for tree and PCA...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-11-27	amwaterhouse	Some reason final radioButtons added to ButtonGroups...	blob \| commitdiff \| diff to current
2006-11-23	amwaterhouse	Register TreePanel with paintrefresher	blob \| commitdiff \| diff to current
2006-11-22	amwaterhouse	TreePanel added to PaintRefresher, not TreeCanvas	blob \| commitdiff \| diff to current
2006-11-22	amwaterhouse	Associate trees with views	blob \| commitdiff \| diff to current
2006-11-21	jprocter	fix unselectable tree leaf nodes when node mapping...	blob \| commitdiff \| diff to current
2006-10-09	jprocter	imported Vamsas bindings and alpha vamsas client code...	blob \| commitdiff \| diff to current
2006-10-05	amwaterhouse	Multiple Views	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-08	amwaterhouse	Capitals	blob \| commitdiff \| diff to current
2006-08-04	jprocter	recover original data for tree and pca as alignment...	blob \| commitdiff \| diff to current
2006-07-27	amwaterhouse	Send gapChar to print original Data	blob \| commitdiff \| diff to current
2006-07-26	jprocter	Implemented CIGAR representation of an Alignment view...	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	getViewAsString can ignore sequenceGroup	blob \| commitdiff \| diff to current
2006-07-19	amwaterhouse	Highlight hidden columns after revealing	blob \| commitdiff \| diff to current
2006-07-18	amwaterhouse	Use selection area with hidden columns in calculations	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Set current tree when ready	blob \| commitdiff \| diff to current
2005-11-18	jprocter	Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...	blob \| commitdiff \| diff to current
2005-10-07	amwaterhouse	getalignment method added	blob \| commitdiff \| diff to current
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	blob \| commitdiff \| diff to current
2005-09-19	amwaterhouse	ShowDistances, placeHolders and bootstraps have their...	blob \| commitdiff \| diff to current
2005-09-16	amwaterhouse	Set distanceMenu selected true	blob \| commitdiff \| diff to current
2005-09-14	amwaterhouse	Move bootStrap/distance settings outside thread	blob \| commitdiff \| diff to current
2005-09-14	amwaterhouse	Use getTreeFont instead of getFont	blob \| commitdiff \| diff to current
2005-09-14	amwaterhouse	use fontchooser to change fonts	blob \| commitdiff \| diff to current
2005-09-13	amwaterhouse	EPSOptions added	blob \| commitdiff \| diff to current
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