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[jalview.git] / src / jalview / io / AppletFormatAdapter.java

2016-09-23	tcofoegbu	JAL-2164 JAL-1919 fixed failed revert commit	blob \| commitdiff
2016-09-16	gmungoc	JAL-2164 removed unused parameters from JmolParser...	blob \| commitdiff \| diff to current
2016-09-13	tcofoegbu	Revert "JAL-2164 JAL-1919 disabled and removed PDB...	blob \| commitdiff \| diff to current
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled and removed PDB file parser...	blob \| commitdiff \| diff to current
2016-07-26	tcofoegbu	JAL-2157 bugfix for issues from enum refactoring	blob \| commitdiff \| diff to current
2016-07-25	tcofoegbu	JAL-2157 bugfix for regression from commit 82a6c8e2e25b...	blob \| commitdiff \| diff to current
2016-07-21	Jim Procter	Merge branch 'apifix/JAL-1926_JAL-2106' into develop	blob \| commitdiff \| diff to current
2016-07-19	tcofoegbu	JAL-1919 set default structure file format to mmCIF...	blob \| commitdiff \| diff to current
2016-07-08	tcofoegbu	JAL-1919 Fixed failing tests, enabled HETATM processing...	blob \| commitdiff \| diff to current
2016-06-30	tcofoegbu	JAL-1919 updated PDBSequenceFetcherTest and JMol parser...	blob \| commitdiff \| diff to current
2016-04-14	gmungoc	JAL-1270 JAL-653 use 'parse immediately' FeaturesFile...	blob \| commitdiff \| diff to current
2016-03-21	tcofoegbu	develop merge	blob \| commitdiff \| diff to current
2016-03-15	tcofoegbu	JAL-1919 refined structure view annotation settings...	blob \| commitdiff \| diff to current
2016-02-25	tcofoegbu	JAL-1919 initial support for mmCIF using JMol API....	blob \| commitdiff \| diff to current
2016-01-21	tcofoegbu	JAL-1919 basic support for importing and viewing mmCIF...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-18	tcofoegbu	JAL-1835 made BioJSON embedding to html exports configu...	blob \| commitdiff \| diff to current
2015-07-21	tcofoegbu	JAL-1443 bugfix to prevent loading of unidentifiable...	blob \| commitdiff \| diff to current
2015-06-30	tcofoegbu	JAL-1641 round trip test/refactoring	blob \| commitdiff \| diff to current
2015-06-26	tcofoegbu	JAL-1641 fixed broken functionalities after refactor	blob \| commitdiff \| diff to current
2015-06-24	Jim Procter	JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-19	Jim Procter	JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...	blob \| commitdiff \| diff to current
2015-06-19	Jim Procter	JAL-1780 JAL-653 organise imports	blob \| commitdiff \| diff to current
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments	blob \| commitdiff \| diff to current
2015-06-12	tcofoegbu	JAL-1641 refactor	blob \| commitdiff \| diff to current
2015-06-07	Jim Procter	JAL-653 GFF recognition for identifyFile and format...	blob \| commitdiff \| diff to current
2015-06-05	tcofoegbu	JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-05-13	tcofoegbu	Fixed some broken tests	blob \| commitdiff \| diff to current
2015-05-12	tcofoegbu	JAL_793 implemented embeding source data in exported...	blob \| commitdiff \| diff to current
2015-05-11	tcofoegbu	JAL-1641 cherry-picked changes into develop compatible...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-14	gmungoc	JAL-1629 .jar option removed from Alignment File Save...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-18	Jim Procter	Merge branch 'JAL-1587_promotedisorder' into develop	blob \| commitdiff \| diff to current
2014-11-18	Jim Procter	JAL-674 make temperature factor, local secondary struct...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Excluded HtmlFile.java dependencies from AppletFomatAdapter	blob \| commitdiff \| diff to current
2014-11-06	Charles Ofoegbu	Updated BioJs Html to be capable of launching jalivew	blob \| commitdiff \| diff to current
2014-10-15	Jim Procter	JAL-674 always try to extract secondary structure when...	blob \| commitdiff \| diff to current
2014-10-06	Jim Procter	Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...	blob \| commitdiff \| diff to current
2014-10-03	Charles Ofoegbu	Integration of David Corsars Phylip File support	blob \| commitdiff \| diff to current
2014-09-26	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-12	j.procter@dundee...	JAL-1486 JAL-1543 pushed alignment viewport->view-...	blob \| commitdiff \| diff to current
2014-09-12	j.procter@dundee...	JAL-1199 add stockholm output to list of AppletFormatAd...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-06-03	Jim Procter	JAL-690 add .jvp as default jalview project filetype	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2014-01-27	Jim Procter	JAL-1430 mfa added as a known extension for FASTA files	blob \| commitdiff \| diff to current
2013-06-07	Jim Procter	Merge branch 'JAL-1161_optimisingAnnotationPanel' into...	blob \| commitdiff \| diff to current
2013-02-14	Jim Procter	Merge branch 'JAL-1199-Stk_writing' into rnaml_test	blob \| commitdiff \| diff to current
2013-02-13	jprocter	JAL-1213 JAL-674 - import a PDB file using Jmol data...	blob \| commitdiff \| diff to current
2013-02-06	jprocter	JAL-1199 refactored stockholm test code from main class...	blob \| commitdiff \| diff to current
2013-02-05	jprocter	formatting	blob \| commitdiff \| diff to current
2012-12-17	Natasha	test for output a file in Stockholm format	blob \| commitdiff \| diff to current
2012-12-04	jprocter	JAL-1213 JAL-674 - import a PDB file using Jmol data...	blob \| commitdiff \| diff to current
2012-11-23	Natasha	stockholm file output code developed by Natasha Sherstneva	blob \| commitdiff \| diff to current
2012-11-17	jprocter	formatting	blob \| commitdiff \| diff to current
2012-11-15	jprocter	allow .rnaml as a filename extension	blob \| commitdiff \| diff to current
2012-11-15	jprocter	Merge branch 'develop' into menard	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-07-10	Anne Menard	v2	blob \| commitdiff \| diff to current
2012-07-05	Anne Menard	Add support RNAML format	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	some print statements to test things	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-841; Structure trigger token in jalview.io.Alignmen...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-01-07	jprocter	check for all http protocols	blob \| commitdiff \| diff to current
2011-01-05	jprocter	JAL-727	blob \| commitdiff \| diff to current
2010-11-14	jprocter	refactored to decouple dependencies due to FileParse...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-20	jprocter	wrapped code from URL retrieval tester as a function...	blob \| commitdiff \| diff to current
2010-06-11	jprocter	stockholm added as readable format (Lauren Lui commit)	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-03-18	jprocter	disabled simple blast parser for 2.4.1 release	blob \| commitdiff \| diff to current
2010-03-17	jprocter	simple query anchored blast report parser (shh!)	blob \| commitdiff \| diff to current
2010-03-11	jprocter	pass any warning messages to StdErr - also todo to...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-02-22	jprocter	valid format for writing test	blob \| commitdiff \| diff to current
2008-01-29	jprocter	minor change to output of main method for testing file IO	blob \| commitdiff \| diff to current
2008-01-29	jprocter	add methods to read from current position of existing...	blob \| commitdiff \| diff to current
2008-01-22	jprocter	timings and memory usage for reading in a file	blob \| commitdiff \| diff to current
2008-01-21	jprocter	javadoc and main method for testing file input routines	blob \| commitdiff \| diff to current
2007-10-04	jprocter	refactored list of file extensions and file format...	blob \| commitdiff \| diff to current
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