JAL-2213 removed PDB from db sources list; also code tidy (typed
[jalview.git] / src / jalview / io / AppletFormatAdapter.java
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser...
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring
2016-07-25 tcofoegbuJAL-2157 bugfix for regression from commit 82a6c8e2e25b...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-04-14 gmungocJAL-1270 JAL-653 use 'parse immediately' FeaturesFile...
2016-03-21 tcofoegbudevelop merge
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-18 tcofoegbuJAL-1835 made BioJSON embedding to html exports configu...
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable...
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-13 tcofoegbuFixed some broken tests
2015-05-12 tcofoegbuJAL_793 implemented embeding source data in exported...
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct...
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-09-26 darolmarJAL-1355
2014-09-23 darolmarJAL-1355
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-...
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class...
2013-02-05 jprocterformatting
2012-12-17 Natashatest for output a file in Stockholm format
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2012-11-23 Natashastockholm file output code developed by Natasha Sherstneva
2012-11-17 jprocterformatting
2012-11-15 jprocterallow .rnaml as a filename extension
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-07-25 janengelhardtsome print statements to test things
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen...
2011-07-25 janengelhardtStart merging of Laurens Code
2011-01-07 jproctercheck for all http protocols
2011-01-05 jprocterJAL-727
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-20 jprocterwrapped code from URL retrieval tester as a function...
2010-06-11 jprocterstockholm added as readable format (Lauren Lui commit)
2010-04-30 jprocterjalview 2.5 release banner
2010-03-18 jprocterdisabled simple blast parser for 2.4.1 release
2010-03-17 jproctersimple query anchored blast report parser (shh!)
2010-03-11 jprocterpass any warning messages to StdErr - also todo to...
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-02-22 jproctervalid format for writing test
2008-01-29 jprocterminor change to output of main method for testing file IO
2008-01-29 jprocteradd methods to read from current position of existing...
2008-01-22 jproctertimings and memory usage for reading in a file
2008-01-21 jprocterjavadoc and main method for testing file input routines
2007-10-04 jprocterrefactored list of file extensions and file format...
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