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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
io
/
IdentifyFile.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-10-30
James Procter
JAL-4315 identify feature settings file from its xml...
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diff to current
2023-05-03
Ben Soares
JAL-629 added eps and imagemap. Added --output and...
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
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diff to current
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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diff to current
2021-09-17
gmungoc
JAL-1260 file formats and IdentifyFile updates for...
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commitdiff
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diff to current
2020-08-10
Jim Procter
JAL-3691 toUpperCase(Locale.ROOT) for all standard...
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commitdiff
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diff to current
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
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commitdiff
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diff to current
2018-11-15
gmungoc
JAL-3032 JAL-2344 project files are 'identifiable'
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commitdiff
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diff to current
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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commitdiff
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diff to current
2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
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commitdiff
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diff to current
2018-06-22
gmungoc
JAL-3032 more informative failure message
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commitdiff
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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commitdiff
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
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diff to current
2017-05-22
gmungoc
JAL-2543 identify as JSON before HTML
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commitdiff
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diff to current
2017-03-27
gmungoc
JAL-2416 parse score matrices in either NCBI or AAindex...
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commitdiff
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diff to current
2017-02-14
gmungoc
Parsing moved to (new) ScoreMatrixFile, drag and drop...
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commitdiff
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diff to current
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
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commitdiff
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diff to current
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-24
gmungoc
Further tweaks to get tests passing
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diff to current
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
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diff to current
2016-05-09
gmungoc
JAL-2098 identify feature file with "<" in feature...
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diff to current
2016-03-21
tcofoegbu
develop merge
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diff to current
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
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commitdiff
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diff to current
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
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diff to current
2015-09-25
tcofoegbu
JAL-1907 bugfix for NPE while parsing a features file
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-08-04
tcofoegbu
JAL-1816 fixed bug in identify file preventing it from...
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commitdiff
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diff to current
2015-07-23
tcofoegbu
JAL-1819 Test cases for Identify file
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commitdiff
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diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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commitdiff
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diff to current
2015-07-09
tcofoegbu
JAL-1806 bug fix to loop through the entire data file...
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commitdiff
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diff to current
2015-07-08
gmungoc
JAL-1759 merge from develop
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commitdiff
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diff to current
2015-07-02
tcofoegbu
JAL-1443 data validation for empty content before loadi...
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commitdiff
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diff to current
2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
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commitdiff
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diff to current
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
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commitdiff
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diff to current
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
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diff to current
2014-11-14
Charles Ofoegbu
House keeping
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commitdiff
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diff to current
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
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commitdiff
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diff to current
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
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commitdiff
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diff to current
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-02-20
Jim Procter
Merge branch 'JAL-1447' into develop
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commitdiff
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diff to current
2014-02-20
Jim Procter
JAL-1447 patch to correctly recognise FASTA files conta...
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commitdiff
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diff to current
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2012-11-15
jprocter
source formatting
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commitdiff
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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diff to current
2012-11-08
jprocter
tidy imports
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-08-14
Anne Menard
last version stay many bugs ..
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commitdiff
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diff to current
2012-07-05
Anne Menard
Add support RNAML format
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2010-10-12
jprocter
patch primary issue causing JAL-664 re testing for...
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-03-18
jprocter
disabled simple blast parser for 2.4.1 release
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commitdiff
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diff to current
2010-03-17
jprocter
simple query anchored blast report parser (shh!)
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commitdiff
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diff to current
2009-08-21
jprocter
pir format ambiguity and todo regarding 'format overrid...
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commitdiff
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-01-29
jprocter
ensure mark is set before identification is started.
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commitdiff
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diff to current
2007-10-31
jprocter
error message associated with an alignment file loading...
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commitdiff
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diff to current
2007-07-25
jprocter
todo comment
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commitdiff
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diff to current
2007-05-09
jprocter
main method for running from command line and better...
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commitdiff
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diff to current
2007-04-26
jprocter
quick fix for verbose fortranesque comments in preamble...
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commitdiff
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diff to current
2007-04-17
jprocter
refactored to allow seeks on a FileParse datasource...
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commitdiff
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diff to current
2007-02-07
amwaterhouse
Formatting
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commitdiff
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diff to current
2007-01-04
amwaterhouse
HEADER and ATOM must be position 0
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commitdiff
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diff to current
2006-11-14
amwaterhouse
Single seq Blc file detection
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commitdiff
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diff to current
2006-11-13
amwaterhouse
Fasta files with * read not identified as BLC
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commitdiff
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diff to current
2006-08-21
amwaterhouse
header updated
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commitdiff
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diff to current
2006-08-14
amwaterhouse
Stockholm parser added
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commitdiff
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diff to current
2006-07-25
amwaterhouse
PDB format added
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commitdiff
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diff to current
2006-05-17
jprocter
added unofficial support for concise output parsing...
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commitdiff
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diff to current
2006-03-08
amwaterhouse
Able to read resources from Zip file
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commitdiff
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diff to current
2005-12-06
amwaterhouse
after merge
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commitdiff
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diff to current
2005-09-15
amwaterhouse
Use equalsIgnoreCase
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commitdiff
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diff to current
2005-08-17
amwaterhouse
Error reply is kept separate from file type
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commitdiff
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
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diff to current
2005-06-08
amwaterhouse
Formatted source
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