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[jalview.git] / src / jalview / jbgui / GAlignFrame.java

2017-02-13	gmungoc	JAL-1632 first cut of Tree chooser dialog and ScoreMode...	blob \| commitdiff
2017-01-23	gmungoc	JAL-2386 unit tests for change colour (and minor refact...	blob \| commitdiff \| diff to current
2017-01-20	gmungoc	Merge branch 'develop' into features/JAL-2360colourSche...	blob \| commitdiff \| diff to current
2017-01-19	gmungoc	JAL-2383 restore PID colour threshold from project...	blob \| commitdiff \| diff to current
2017-01-17	gmungoc	Merge branch 'develop' into features/JAL-2360colourSche...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 FileFormats singleton for formats, FileFormatI...	blob \| commitdiff \| diff to current
2016-12-21	gmungoc	JAL-2360 ColourMenuHelper now builds and selects items...	blob \| commitdiff \| diff to current
2016-12-20	gmungoc	JAL-2360 ColourSchemes holds configured schemes, AlignF...	blob \| commitdiff \| diff to current
2016-12-19	gmungoc	JAL-2361 select colour menu item by matching its name...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 refactoring for JalviewColourScheme enum,	blob \| commitdiff \| diff to current
2016-12-13	gmungoc	JAL-2361 adding items to applet colour menus, TCoffee...	blob \| commitdiff \| diff to current
2016-12-12	gmungoc	JAL-2361 extract methods to (re-)build colour menu	blob \| commitdiff \| diff to current
2016-12-09	gmungoc	JAL-1895 suppress RNA interaction colour option	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	Distinguish text-only output formats and others (.jar...	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	FileFormatI further tweaks, clean compile	blob \| commitdiff \| diff to current
2016-11-22	Jim Procter	JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...	blob \| commitdiff \| diff to current
2016-11-02	Jim Procter	JAL-345 JAL-1738 menu item, AlignFrame action listener...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-31	gmungoc	JAL-2077 test isPopupTrigger in mouseReleased or mouseC...	blob \| commitdiff \| diff to current
2016-08-24	gmungoc	JAL-1355 correct 'thereshold' to 'threshold' in message...	blob \| commitdiff \| diff to current
2016-08-23	gmungoc	JAL-2176 unused field / methods removed	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2077 - reinstate popups on osx	blob \| commitdiff \| diff to current
2016-04-22	gmungoc	JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-391 new Calculate options to Reverse, Reverse Compl...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-01	tcofoegbu	JAL-1912 refactor annotation refsequence assignemnt...	blob \| commitdiff \| diff to current
2015-09-30	tcofoegbu	JAL-1912 added support of tcoffee annotation and other...	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1865 fixed so initial state of annotation sort...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-06	Jim Procter	JAL-1645 JAL-1355 UI/i18n: added missing messages,...	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-07	tcofoegbu	JAL-1805 test envirionment separation	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-20	Charles Ofoegbu	JAL-1553 enhancement of column selection by annotation...	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 implementation of column selection by annotati...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	Merge branch 'JAL-1569_wuss_vienna_broke' into develop	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	JAL-1595 update annotation sort on opening of the ...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	Merge branch 'features/typed_annotations_calcId' into...	blob \| commitdiff \| diff to current
2014-11-06	gmungoc	JAL-1152 use a proper RadioButton not a faked one	blob \| commitdiff \| diff to current
2014-11-05	gmungoc	JAL-1152 new Structure tab on Preferences for SS deriva...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help docume...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 prototype of new Annotations menu with sort...	blob \| commitdiff \| diff to current
2014-10-30	Charles Ofoegbu	JAL-1541 BioJs MSA Viewer export option implementation	blob \| commitdiff \| diff to current
2014-10-10	gmungoc	JAL-1481 wrap tooltip in html	blob \| commitdiff \| diff to current
2014-10-08	gmungoc	Merge branch 'Release_2_8_2_Branch' into	blob \| commitdiff \| diff to current
2014-10-03	gmungoc	JAL-1264 show/hide annotations; JAL-1481 Find tooltip	blob \| commitdiff \| diff to current
2014-09-25	gmungoc	JAL-1264 tidy up use of MouseListener for showHideAnnot...	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	gmungoc	JAL-1264 first cut of panel for annotation show/hide...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-23	Jim Procter	Merge branch 'jims_marckhacks' into develop	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1355 keys for colours	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	Merge branch 'jims_marckhacks' into develop	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1355 JAL-1466 i18n for flanking sequence menu entry...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 new calculation menu option to recover the...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 menu entries for different score models availa...	blob \| commitdiff \| diff to current
2014-02-21	Jim Procter	Merge branch 'pathc_JAL-1354' into develop	blob \| commitdiff \| diff to current
2014-02-21	Jim Procter	JAL-1354 typo	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-10-14	Jim Procter	Merge branch 'develop' into dev_from_2_8_1	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 documentation and consistent ordering for...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 group/ungroup sequences with command/ctrl...	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-11-15	jprocter	don't set background colour for menu bar	blob \| commitdiff \| diff to current
2012-11-15	jprocter	Merge branch 'develop' into menard	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-07-10	Anne Menard	v2	blob \| commitdiff \| diff to current
2012-05-24	jprocter	JAL-1078 - removed 'Load Score File' menu item and...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	renamed menu entry to avoid field name clash	blob \| commitdiff \| diff to current
2011-10-11	jprocter	normalised logo rendering (JAL-958)	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
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