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Merge branch 'spotless_2' into JAL-1551_2_11_3_spotlett
[jalview.git] / src / jalview / util / Comparison.java
2022-11-16 Ben SoaresJAL-4019 finalised a boolean option and tidied some... blob | commitdiff
2022-11-14 Ben SoaresJAL-4019 Make diagnostic message debug level blob | commitdiff | diff to current
2022-11-13 Ben SoaresJAL-4019 improvement to short sequence nucleotide detec... blob | commitdiff | diff to current
2022-11-10 Ben SoaresJAL-4019 Nucleotide Ambiguity Colour Scheme added.... blob | commitdiff | diff to current
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 blob | commitdiff | diff to current
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but... blob | commitdiff | diff to current
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... blob | commitdiff | diff to current
2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... blob | commitdiff | diff to current
2017-02-20 gmungocJAL-2416 public constant for space gap character blob | commitdiff | diff to current
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... blob | commitdiff | diff to current
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... blob | commitdiff | diff to current
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-06-03 gmungocJAL-2110 random stuff blob | commitdiff | diff to current
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... blob | commitdiff | diff to current
2016-01-11 gmungocJAL-1989 map hidden column ranges blob | commitdiff | diff to current
2015-12-02 gmungocJAL-1827 added overloaded method for convenience blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-05-30 jprocterfirst patch for JAL-838 - allow new typed of PID calcs blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-12-05 amwaterhousesequence is char [] blob | commitdiff | diff to current
2006-10-24 amwaterhouseMake everything final blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-07-18 amwaterhouseTakes strings, not seqs blob | commitdiff | diff to current
2006-07-07 amwaterhouseOptimised PID method blob | commitdiff | diff to current
2005-12-06 amwaterhouseafter merge blob | commitdiff | diff to current
2005-08-18 jproctervarious case sensitivity bugs fixed in residue comparis... blob | commitdiff | diff to current
2005-08-15 amwaterhouseisGap slightly more efficient blob | commitdiff | diff to current
2005-06-30 amwaterhouseFormatting changes blob | commitdiff | diff to current
2005-06-08 amwaterhouseFormatted source blob | commitdiff | diff to current
2005-06-08 amwaterhouseGPL license added blob | commitdiff | diff to current
2005-06-03 jprocterReinstated 'create tree from selected region only'... blob | commitdiff | diff to current
2005-05-30 jproctercomments blob | commitdiff | diff to current
2005-05-27 jprocterAddred GapChar string for convenient regex construction blob | commitdiff | diff to current
2005-03-08 jprocterfixed interface for PID method. blob | commitdiff | diff to current
2005-01-24 amwaterhousebug in compare fixed blob | commitdiff | diff to current
2004-12-16 amwaterhouseilen and jlen no longer +1 blob | commitdiff | diff to current
2004-12-15 amwaterhouseisGap method added to utils blob | commitdiff | diff to current
2004-11-02 amwaterhouseJalview Imported Sources start blob | commitdiff | diff to current