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[jalview.git] / src / jalview / gui / SequenceRenderer.java

2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff
2019-05-06	gmungoc	JAL-3239 release note	blob \| commitdiff \| diff to current
2019-05-02	gmungoc	JAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps	blob \| commitdiff \| diff to current
2017-11-22	gmungoc	JAL-2069 spike updated with latest (FeatureTypeSettings)	blob \| commitdiff \| diff to current
2017-11-13	kiramt	JAL-2811 Add layer for cursor in SeqCanvas	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-05	kiramt	JAL-2722 Reinstate allGroups value setting in getResidu...	blob \| commitdiff \| diff to current
2017-08-18	Jim Procter	Merge branch 'feature/2588' into merge/develop_feature...	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-12	kiramt	JAL-2588 Check/fix show boxes settings + unit test...	blob \| commitdiff \| diff to current
2017-07-12	kiramt	JAL-2588 Added tests	blob \| commitdiff \| diff to current
2017-07-11	kiramt	JAL-2588 (and JAL-2610, JAL-2603) mid refactor	blob \| commitdiff \| diff to current
2017-06-28	kiramt	JAL-2588 Gap colour scheme now shown in overview	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-08	kiramt	JAL-2588 Consistent gap colour when in None colour...	blob \| commitdiff \| diff to current
2017-06-05	kiramt	JAL-2588 Naive implementation of gaps as grey in overview	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2388OverviewWindow' into...	blob \| commitdiff \| diff to current
2017-05-08	kiramt	JAL-2512 Fix to show non-gap positions in None colour...	blob \| commitdiff \| diff to current
2017-03-24	kiramt	JAL-2388 Removing AlignmentPanel dependency (mostly)	blob \| commitdiff \| diff to current
2017-03-15	gmungoc	JAL-2443 push getResidueBoxColour inside getResidueColour	blob \| commitdiff \| diff to current
2017-03-13	gmungoc	JAL-2438 FeatureColourFinder refactored from FeatureRen...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-27	gmungoc	JAL-2371 CollectionColourScheme renamed ResidueShader...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-07-19	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	JAL-1551 tidy	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	JAL-2065 don’t pass stale group reference	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	JAL-2068 avoid ArrayIndexOutOfBounds when consensus...	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	JAL-2065 check position lies within group before gettin...	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 notes on efficiency	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1370 detect any type of gap character in reference...	blob \| commitdiff \| diff to current
2015-06-01	Jim Procter	JAL-1370 group and alignment reference sequences are...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-09	Jim Procter	Merge branch 'JAL-1372_referenceseq' into feature_29...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-05	gmungoc	JAL-1609 refactored colour by sequence command, now...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-08-30	Jim Procter	JAL-1370 allow show unconserved to reflect differences...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-05	jprocter	Revert "partial patch for JAL-411 - text rendered above...	blob \| commitdiff \| diff to current
2011-07-05	jprocter	partial patch for JAL-411 - text rendered above features	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-18	jprocter	refactor to jalview.api methods	blob \| commitdiff \| diff to current
2010-06-06	jprocter	patch for JAL-542	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-12	jprocter	nullpointer bugfix (possibly not needed - was an error...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-02-06	jprocter	showUnconserved view and group setting	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-11-13	amwaterhouse	Colour text	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Monospace check	blob \| commitdiff \| diff to current
2006-05-15	amwaterhouse	Monospaced font not allowed if charWidth stretched	blob \| commitdiff \| diff to current
2006-05-15	amwaterhouse	EPS font width is a double, check this for monospacedFont	blob \| commitdiff \| diff to current
2006-04-28	amwaterhouse	validCharWidth moved to viewport	blob \| commitdiff \| diff to current
2006-04-28	amwaterhouse	validCharWidth checks	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Cursor colour	blob \| commitdiff \| diff to current
2006-03-24	amwaterhouse	Cursor added	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Less args, faster rendering	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	Faster paint	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	After merge	blob \| commitdiff \| diff to current
2005-10-03	amwaterhouse	Remove float width	blob \| commitdiff \| diff to current
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	blob \| commitdiff \| diff to current
2005-09-20	amwaterhouse	Checks end of sequence before drawing text	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-24	amwaterhouse	setgraphics black	blob \| commitdiff \| diff to current
2005-05-23	amwaterhouse	colour groups by text colour	blob \| commitdiff \| diff to current
2005-05-23	amwaterhouse	boxes, colour text, show text added to groups	blob \| commitdiff \| diff to current
2005-05-04	amwaterhouse	no need to send vector pid or seqnum	blob \| commitdiff \| diff to current
2005-04-15	amwaterhouse	no need to send consensus everytime	blob \| commitdiff \| diff to current
2005-04-06	amwaterhouse	dont draw first block if colour is null	blob \| commitdiff \| diff to current
2005-03-15	amwaterhouse	selection removed, now SelectionGroup does same job...	blob \| commitdiff \| diff to current
2005-03-08	amwaterhouse	only set graphics black once at beginning of text	blob \| commitdiff \| diff to current
2005-01-13	amwaterhouse	Send array of groups to renderer	blob \| commitdiff \| diff to current
2005-01-13	amwaterhouse	GetResidueBoxColour altered for faster rendering	blob \| commitdiff \| diff to current
2004-12-17	amwaterhouse	Use the isGap method in utils	blob \| commitdiff \| diff to current
2004-12-15	amwaterhouse	ColourScheme no longer requires sequence	blob \| commitdiff \| diff to current
2004-12-14	amwaterhouse	Dont try{}catch the findColour method, lets fix this now	blob \| commitdiff \| diff to current
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