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JAL-2629 add HMM Match Score colour scheme
[jalview.git] / src / jalview / gui / TreePanel.java
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... blob | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... blob | commitdiff | diff to current
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... blob | commitdiff | diff to current
2018-04-26 gmungocJAL-2962 remove Change Parameters menu from PCA panel blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... blob | commitdiff | diff to current
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop blob | commitdiff | diff to current
2017-10-24 gmungocJAL-2738 update spike branch with latest blob | commitdiff | diff to current
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-09-01 gmungocJAL-2216 remove alignment listener when Tree Panel... blob | commitdiff | diff to current
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass" blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges blob | commitdiff | diff to current
2017-05-02 gmungocJAL-2499 inlined two 1-line methods blob | commitdiff | diff to current
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text blob | commitdiff | diff to current
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... blob | commitdiff | diff to current
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... blob | commitdiff | diff to current
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... blob | commitdiff | diff to current
2017-02-27 gmungocJAL-1632 refactored NJTree constructor to include Simil... blob | commitdiff | diff to current
2017-02-27 gmungocJAL-2403 JAL-838 remove unused methods and unneeded... blob | commitdiff | diff to current
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... blob | commitdiff | diff to current
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... blob | commitdiff | diff to current
2017-02-17 gmungocJAL-2423 refactored method to build panel title for... blob | commitdiff | diff to current
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV" blob | commitdiff | diff to current
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... blob | commitdiff | diff to current
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... blob | commitdiff | diff to current
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... blob | commitdiff | diff to current
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... blob | commitdiff | diff to current
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-01-07 Jim ProcterJAL-1483 refactor NJTree constructor to allow preconfig... blob | commitdiff | diff to current
2015-01-07 Jim ProcterJAL-1483 organise imports blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-12-25 darolmarJAL-1355 (basic i18n support) blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-09-27 jprocterJAL-1030 patch typo blob | commitdiff | diff to current
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty... blob | commitdiff | diff to current
2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignm... blob | commitdiff | diff to current
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-08-18 jprocterJAL-612 - catch hidden OOM related to filling in cut... blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2010-04-29 jprocterproperty change race condition (bug 0062693) and isAlig... blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2009-06-01 jprocterprototype function for relabelling treenodes with diffe... blob | commitdiff | diff to current
2009-03-17 jproctersortbytree view setting and action added - setting... blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2008-08-13 jproctercheck for null viewport on dataset recovery blob | commitdiff | diff to current
2008-08-13 jprocterensure input data can be recovered for tree and PCA... blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-11-27 amwaterhouseSome reason final radioButtons added to ButtonGroups... blob | commitdiff | diff to current
2006-11-23 amwaterhouseRegister TreePanel with paintrefresher blob | commitdiff | diff to current
2006-11-22 amwaterhouseTreePanel added to PaintRefresher, not TreeCanvas blob | commitdiff | diff to current
2006-11-22 amwaterhouseAssociate trees with views blob | commitdiff | diff to current
2006-11-21 jprocterfix unselectable tree leaf nodes when node mapping... blob | commitdiff | diff to current
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code... blob | commitdiff | diff to current
2006-10-05 amwaterhouseMultiple Views blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-08-08 amwaterhouseCapitals blob | commitdiff | diff to current
2006-08-04 jprocterrecover original data for tree and pca as alignment... blob | commitdiff | diff to current
2006-07-27 amwaterhouseSend gapChar to print original Data blob | commitdiff | diff to current
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view... blob | commitdiff | diff to current
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup blob | commitdiff | diff to current
2006-07-19 amwaterhouseHighlight hidden columns after revealing blob | commitdiff | diff to current
2006-07-18 amwaterhouseUse selection area with hidden columns in calculations blob | commitdiff | diff to current
2006-04-04 amwaterhouseSet current tree when ready blob | commitdiff | diff to current
2005-11-18 jprocterFixed bug dragonfly.compbio.dundee.ac.uk/mantis/view... blob | commitdiff | diff to current
2005-10-07 amwaterhousegetalignment method added blob | commitdiff | diff to current
2005-09-30 amwaterhouseRemove redundancy in Eclipse blob | commitdiff | diff to current
2005-09-19 amwaterhouseShowDistances, placeHolders and bootstraps have their... blob | commitdiff | diff to current
2005-09-16 amwaterhouseSet distanceMenu selected true blob | commitdiff | diff to current
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