Merge branch 'develop' into features/JAL-2110_crossRefDuplications
[jalview.git] / src / jalview / io / IdentifyFile.java
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature...
2016-03-21 tcofoegbudevelop merge
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-04 tcofoegbuJAL-1816 fixed bug in identify file preventing it from...
2015-07-23 tcofoegbuJAL-1819 Test cases for Identify file
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable...
2015-07-09 tcofoegbuJAL-1806 bug fix to loop through the entire data file...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi...
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format...
2015-05-12 tcofoegbuJAL_793 implemented embeding source data in exported...
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-14 Charles OfoegbuHouse keeping
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-11-15 jproctersource formatting
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-05 Anne MenardAdd support RNAML format
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-10-12 jprocterpatch primary issue causing JAL-664 re testing for...
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2010-03-18 jprocterdisabled simple blast parser for 2.4.1 release
2010-03-17 jproctersimple query anchored blast report parser (shh!)
2009-08-21 jprocterpir format ambiguity and todo regarding 'format overrid...
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-01-29 jprocterensure mark is set before identification is started.
2007-10-31 jproctererror message associated with an alignment file loading...
2007-07-25 jproctertodo comment
2007-05-09 jproctermain method for running from command line and better...
2007-04-26 jprocterquick fix for verbose fortranesque comments in preamble...
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource...
2007-02-07 amwaterhouseFormatting
2007-01-04 amwaterhouseHEADER and ATOM must be position 0
2006-11-14 amwaterhouseSingle seq Blc file detection
2006-11-13 amwaterhouseFasta files with * read not identified as BLC
2006-08-21 amwaterhouseheader updated
2006-08-14 amwaterhouseStockholm parser added
2006-07-25 amwaterhousePDB format added
2006-05-17 jprocteradded unofficial support for concise output parsing...
2006-03-08 amwaterhouseAble to read resources from Zip file
2005-12-06 amwaterhouseafter merge
2005-09-15 amwaterhouseUse equalsIgnoreCase
2005-08-17 amwaterhouseError reply is kept separate from file type
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-02 amwaterhouseWarn if URL not found
2005-05-27 jprocterbetter recognition of MSF files.
2005-05-27 jprocterResponse to bug mantis?id=8187 - some quick hacks to...
2005-05-26 jprocterfairly pointless catch exception error information...
2005-05-03 amwaterhouseformatAdapter.formats, remove redundant code
2005-03-23 amwaterhousereads MSF files even if PILEUP is missing
2005-03-21 amwaterhouseidentifies more varied blc files
2004-11-02 amwaterhouseJalview Imported Sources start