source.jalview.org Git - jalview.git/history - src/jalview/io/IdentifyFile.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / io / IdentifyFile.java

2018-02-20	gmungoc	Merge branch 'develop' into features/mchmmer	blob \| commitdiff
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-18	TZVanaalten	Merge branch 'develop' into features/hmmer	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-22	TZVanaalten	fully integrate HMMER3 file format into Jalview	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-22	gmungoc	JAL-2543 identify as JSON before HTML	blob \| commitdiff \| diff to current
2017-03-27	gmungoc	JAL-2416 parse score matrices in either NCBI or AAindex...	blob \| commitdiff \| diff to current
2017-02-14	gmungoc	Parsing moved to (new) ScoreMatrixFile, drag and drop...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 separated AlignmentFileI into AlignmentFileRea...	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	Further tweaks to get tests passing	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	FileFormatI further tweaks, clean compile	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-05-09	gmungoc	JAL-2098 identify feature file with "<" in feature...	blob \| commitdiff \| diff to current
2016-03-21	tcofoegbu	develop merge	blob \| commitdiff \| diff to current
2016-01-21	tcofoegbu	JAL-1919 basic support for importing and viewing mmCIF...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-25	tcofoegbu	JAL-1907 bugfix for NPE while parsing a features file	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-04	tcofoegbu	JAL-1816 fixed bug in identify file preventing it from...	blob \| commitdiff \| diff to current
2015-07-23	tcofoegbu	JAL-1819 Test cases for Identify file	blob \| commitdiff \| diff to current
2015-07-21	tcofoegbu	JAL-1443 bugfix to prevent loading of unidentifiable...	blob \| commitdiff \| diff to current
2015-07-09	tcofoegbu	JAL-1806 bug fix to loop through the entire data file...	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-02	tcofoegbu	JAL-1443 data validation for empty content before loadi...	blob \| commitdiff \| diff to current
2015-06-07	Jim Procter	JAL-653 GFF recognition for identifyFile and format...	blob \| commitdiff \| diff to current
2015-05-12	tcofoegbu	JAL_793 implemented embeding source data in exported...	blob \| commitdiff \| diff to current
2015-05-11	tcofoegbu	JAL-1641 cherry-picked changes into develop compatible...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	House keeping	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Excluded HtmlFile.java dependencies from AppletFomatAdapter	blob \| commitdiff \| diff to current
2014-11-06	Charles Ofoegbu	Updated BioJs Html to be capable of launching jalivew	blob \| commitdiff \| diff to current
2014-10-03	Charles Ofoegbu	Integration of David Corsars Phylip File support	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-20	Jim Procter	Merge branch 'JAL-1447' into develop	blob \| commitdiff \| diff to current
2014-02-20	Jim Procter	JAL-1447 patch to correctly recognise FASTA files conta...	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-11-15	jprocter	source formatting	blob \| commitdiff \| diff to current
2012-11-15	jprocter	Merge branch 'develop' into menard	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-07-05	Anne Menard	Add support RNAML format	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-10-12	jprocter	patch primary issue causing JAL-664 re testing for...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-03-18	jprocter	disabled simple blast parser for 2.4.1 release	blob \| commitdiff \| diff to current
2010-03-17	jprocter	simple query anchored blast report parser (shh!)	blob \| commitdiff \| diff to current
2009-08-21	jprocter	pir format ambiguity and todo regarding 'format overrid...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-01-29	jprocter	ensure mark is set before identification is started.	blob \| commitdiff \| diff to current
2007-10-31	jprocter	error message associated with an alignment file loading...	blob \| commitdiff \| diff to current
2007-07-25	jprocter	todo comment	blob \| commitdiff \| diff to current
2007-05-09	jprocter	main method for running from command line and better...	blob \| commitdiff \| diff to current
2007-04-26	jprocter	quick fix for verbose fortranesque comments in preamble...	blob \| commitdiff \| diff to current
2007-04-17	jprocter	refactored to allow seeks on a FileParse datasource...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-04	amwaterhouse	HEADER and ATOM must be position 0	blob \| commitdiff \| diff to current
2006-11-14	amwaterhouse	Single seq Blc file detection	blob \| commitdiff \| diff to current
2006-11-13	amwaterhouse	Fasta files with * read not identified as BLC	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-14	amwaterhouse	Stockholm parser added	blob \| commitdiff \| diff to current
2006-07-25	amwaterhouse	PDB format added	blob \| commitdiff \| diff to current
2006-05-17	jprocter	added unofficial support for concise output parsing...	blob \| commitdiff \| diff to current
2006-03-08	amwaterhouse	Able to read resources from Zip file	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	after merge	blob \| commitdiff \| diff to current
2005-09-15	amwaterhouse	Use equalsIgnoreCase	blob \| commitdiff \| diff to current
2005-08-17	amwaterhouse	Error reply is kept separate from file type	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-06-02	amwaterhouse	Warn if URL not found	blob \| commitdiff \| diff to current
2005-05-27	jprocter	better recognition of MSF files.	blob \| commitdiff \| diff to current
2005-05-27	jprocter	Response to bug mantis?id=8187 - some quick hacks to...	blob \| commitdiff \| diff to current
2005-05-26	jprocter	fairly pointless catch exception error information...	blob \| commitdiff \| diff to current
2005-05-03	amwaterhouse	formatAdapter.formats, remove redundant code	blob \| commitdiff \| diff to current
2005-03-23	amwaterhouse	reads MSF files even if PILEUP is missing	blob \| commitdiff \| diff to current
2005-03-21	amwaterhouse	identifies more varied blc files	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

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