JAL-2994 put ‘\’ first in character class clause of regex - otherwise doesn’t compile...
[jalview.git] / src / jalview / renderer / AnnotationRenderer.java
2018-03-16 gmungocMerge branch 'develop' into trialMerge
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM...
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-28 tzvanaaltenJAL-2629 add option to set HMM Logo letter height to...
2017-08-25 TZVanaaltenJAL-2629 add adjustable parameters to hmmbuild
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder...
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics
2017-07-12 TZVanaaltentest HMM annotaTION
2017-07-11 TZVanaaltencomplete Information Content annotation
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns
2016-11-02 gmungocJAL-98 ProfileI interface for Profile
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation...
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-26 gmungocJAL-1854 comment switch case fallthrough
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering...
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original...
2016-04-04 Jim ProcterJAL-2001 use fast column selection test
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-07-15 gmungocJAL-1813 only pair up A-Z with a-z if annotation is RNA
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-07 tcofoegbuJAL-1805 test envirionment separation
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-23 Jim Procteremploy test and secondary structure character for deter...
2014-11-23 Jim ProcterJAL-1569 formatting
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA...
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors.
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors.
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
2013-07-12 Jim ProcterMerge branch 'JAL-1347' into develop
2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment...
2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is...
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop
2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consen...
2013-07-11 Jim ProcterJAL-1347 refactor logic for setting display flags for...
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-05-24 Jim ProcterJAL-1291 TODO: revised graphGroup model so grouped...
2013-05-24 Jim ProcterJAL-1291 conditional output of rendering debugging...
2013-05-24 Jim ProcterJAL-1161 conditional parameters for controlling clipping
2013-05-24 Jim ProcterJAL-1292 avoid exception by using bitset of arbitrary...
2013-02-13 Jim ProcterMerge branch 'jims_annotate3d_update' into menard_final...
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop
2013-01-18 jprocterJAL-1254 patch for NPE in annotation renderer when...
2012-12-07 jprocterrevised renderer and annotation model to support differ...
2012-11-15 jproctersource formatting
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-28 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of...
2012-06-12 jprocterJAL-1115 - use local reference for annotation row
2012-06-07 jprocterjavatidy
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calcu...
2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus...
2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3...
2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profi...
2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles
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