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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
schemes
/
ResidueProperties.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2022-11-13
Ben Soares
JAL-4019 small but important corrections to array order...
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diff to current
2022-11-13
Ben Soares
JAL-4019 improvement to short sequence nucleotide detec...
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commitdiff
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diff to current
2022-11-10
Ben Soares
JAL-4019 Nucleotide Ambiguity Colour Scheme added....
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diff to current
2022-05-12
Ben Soares
JAL-4014 4 gecos colour schemes added
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commitdiff
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
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diff to current
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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commitdiff
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diff to current
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
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diff to current
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
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diff to current
2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
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commitdiff
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diff to current
2018-03-16
gmungoc
JAL-2620 alternative genetic code translation tables
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commitdiff
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diff to current
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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diff to current
2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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diff to current
2017-02-17
gmungoc
JAL-2416 BLOSUM62 removed from ResidueProperties
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diff to current
2017-02-17
gmungoc
JAL-2416 removed DNA and PAM250 matrices from ResiduePr...
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diff to current
2017-02-17
gmungoc
JAL-2416 scoreMatrices removed from ResidueProperties
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diff to current
2017-02-13
gmungoc
JAL-1632 JAL-2416 load score matrices from file, as...
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diff to current
2017-02-13
gmungoc
JAL-1632 first cut of Tree chooser dialog and ScoreMode...
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diff to current
2017-02-09
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
features/JAL-2379pcaMemory
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diff to current
2017-02-07
gmungoc
JAL-2398 corrected entry for C->R in Blosum62 matrix
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diff to current
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
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diff to current
2016-11-08
gmungoc
JAL-2301 made T hydrophobic as per the cited conservati...
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commitdiff
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diff to current
2016-11-01
gmungoc
JAL-98 use Integer constants; tests added for propHash...
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
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diff to current
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
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commitdiff
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diff to current
2016-08-12
gmungoc
JAL-1841 bug fixes / code tidy for rna SS rendering...
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commitdiff
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diff to current
2016-02-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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commitdiff
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diff to current
2016-01-21
tcofoegbu
JAL-1479 JAL-1979 updated the modified-aminoacid triple...
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commitdiff
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diff to current
2015-12-22
gmungoc
JAL-1421 parameterised map constructor used
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-09-07
gmungoc
JAL-1636 translate stop codon as '*', mouseover * as...
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commitdiff
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diff to current
2015-09-03
gmungoc
JAL-1828 lookup table to convert MSE to MET when parsin...
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commitdiff
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diff to current
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
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commitdiff
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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diff to current
2015-01-07
Jim Procter
JAL-1483 register feature similarity model
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commitdiff
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
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diff to current
2014-11-23
Jim Procter
JAL-1569 test for open/close RNA parenthesis character
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commitdiff
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diff to current
2014-11-23
Jim Procter
JAL-1569 formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
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diff to current
2014-06-03
Jim Procter
JAL-1512 comment out for 2.8.1 release
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commitdiff
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diff to current
2014-06-03
Jim Procter
JAL-1512 fix calculation once again and include score...
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commitdiff
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diff to current
2014-06-02
Jim Procter
JAL-1512 rejig buggy conservation-basesd score matrix...
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commitdiff
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
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commitdiff
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diff to current
2014-04-21
Jim Procter
JAL-1473 provide Amino acid physicochemical conservatio...
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commitdiff
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diff to current
2014-04-21
Jim Procter
JAL-1473 refactor score matrices and tree score calcula...
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commitdiff
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diff to current
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-06-18
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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commitdiff
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diff to current
2013-06-17
Jim Procter
Merge branch 'JAL-1312_ambiguity_na' into develop
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commitdiff
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diff to current
2013-06-17
Jim Procter
JAL-1027 fix errors in alternative codon table
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commitdiff
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diff to current
2013-06-17
Jim Procter
JAL-1027 use alternative codon table in ResidueProperti...
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commitdiff
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diff to current
2013-06-17
Jim Procter
JAL-529 - IUBMB nucleotide ambiguity codes and programm...
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commitdiff
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diff to current
2012-12-07
jprocter
revised renderer and annotation model to support differ...
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commitdiff
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diff to current
2012-12-07
jprocter
typing
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-09-06
jprocter
JAL-1027 JAL-1167 documentation and patched DNA/RNA...
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commitdiff
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diff to current
2012-08-14
Anne Menard
last version stay many bugs ..
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commitdiff
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diff to current
2012-07-05
Anne Menard
Add support RNAML format
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commitdiff
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diff to current
2012-06-15
jprocter
Merge branch 'JAL-1013_pca_rna_dna' into develop
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commitdiff
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diff to current
2011-12-08
jprocter
(JAL-1013) gap character index for each sequence alphabet
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commitdiff
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diff to current
2011-12-08
jprocter
JAL-1027 fixed up nucleotide subt matrix so it is symme...
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-07-25
janengelhardt
Start merging of Laurens Code
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-14
jprocter
todo and disable selection sharing between views on...
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commitdiff
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diff to current
2009-08-21
jprocter
asparagine is polar but not charged
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commitdiff
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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diff to current
2008-11-12
jprocter
gracefully translate ambigous nucleotides as 'X'
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commitdiff
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-02-24
jprocter
sequenceId is a string, not an integer - allows generat...
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commitdiff
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diff to current
2007-08-08
jprocter
histidine should be midblue (noticed by Peter Knight...
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commitdiff
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diff to current
2007-04-30
jprocter
dssp 7-state to three state lookup
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commitdiff
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diff to current
2007-04-11
jprocter
fixed base lookup bug in dna pairwise alignment and...
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commitdiff
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diff to current
2007-03-19
jprocter
note about selenocystine.
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diff to current
2007-02-07
amwaterhouse
Formatting
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commitdiff
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diff to current
2007-01-30
amwaterhouse
Any character non aa or nucleotide is a space
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commitdiff
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diff to current
2006-12-06
jprocter
general pairwise substitution score models for pairwise...
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commitdiff
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diff to current
2006-12-05
amwaterhouse
Sequence is char []
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