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[jalview.git] / src / jalview / io / FileLoader.java

2022-06-03	Jim Procter	JAL-1953 2.11.2 with Archeopteryx!	blob \| commitdiff
2022-06-02	Jim Procter	Merge branch 'kjvdh/features/PhylogenyViewer_tabbedsupp...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 JAL-1842 minor tidying of code	blob \| commitdiff \| diff to current
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 JAL-1842 minor tidying of code	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-04-18	hansonr	explicit Hashtable objects	blob \| commitdiff \| diff to current
2019-04-17	gmungoc	JAL-3026 fix bug loading Jalview Project (in Java)	blob \| commitdiff \| diff to current
2019-03-27	hansonr	consolidation of Platform isJS calls	blob \| commitdiff \| diff to current
2019-03-19	Ben Soares	JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	blob \| commitdiff \| diff to current
2018-12-13	Ben Soares	JAL-3130 Attempting to fix 8 tests that pass on a Mac...	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-11-06	hansonr	JAXB marshalling by JavaScript successfully unmarshalle...	blob \| commitdiff \| diff to current
2018-11-02	hansonr	Marshalling produces valid ZIP file. Unmarshalling...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-04	gmungoc	JAL-3132 set status message when over sequence id or...	blob \| commitdiff \| diff to current
2018-09-19	gmungoc	JAL-3063 use JAXB for 'Save as Project' and load projec...	blob \| commitdiff \| diff to current
2018-08-27	hansonr	JAL-3026 alignmentFrame.statusBar.setText -> .setStatus	blob \| commitdiff \| diff to current
2018-08-24	hansonr	JAL-3026 GD#107,128,130,139 build-site.xml	blob \| commitdiff \| diff to current
2018-07-02	hansonr	JAL-3026 File...Reload working	blob \| commitdiff \| diff to current
2018-06-28	hansonr	JAL-3032 DND enabled; additional io changes for File...	blob \| commitdiff \| diff to current
2018-06-27	hansonr	JAL-3032 part2 local file reading by JFileChooser	blob \| commitdiff \| diff to current
2018-06-20	gmungoc	JAL-3032 simplified _LoadFileWaitTillLoaded with no...	blob \| commitdiff \| diff to current
2018-06-20	hansonr	JAL-3032 FileLoader fixes for SwingJS	blob \| commitdiff \| diff to current
2018-01-17	kjvdheide	JAL-281 added initialising trees to FileLoader if filef...	blob \| commitdiff \| diff to current
2018-01-10	kjvdheide	JAL-1953 named various threads	blob \| commitdiff \| diff to current
2017-12-05	kjvdheide	JAL-2847 Strings for the various tree databases added	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-26	kjvdheide	Merge branch 'develop' of https://source.jalview.org...	blob \| commitdiff \| diff to current
2017-10-26	kjvdheide	named most Jalview threads	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-01	gmungoc	JAL-2488 remove finalize methods	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...	blob \| commitdiff \| diff to current
2017-05-26	tcofoegbu	JAL-2465 Improvement to re-instate storing recently...	blob \| commitdiff \| diff to current
2017-05-26	tcofoegbu	JAL-2465 fix to prevent files loaded from the system...	blob \| commitdiff \| diff to current
2017-05-15	tcofoegbu	JAL-2520 improvement to use URL leaf name for creating...	blob \| commitdiff \| diff to current
2017-05-09	tcofoegbu	JAL-2520 improvement to download and update structure...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 separated AlignmentFileI into AlignmentFileRea...	blob \| commitdiff \| diff to current
2017-01-11	gmungoc	JAL-2344 FileFormats singleton for formats, FileFormatI...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	JAL-2344 use .equals() to compare FileFormatI objects	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	FileFormatI further tweaks, clean compile	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-03-23	tcofoegbu	JAL-2009 added programmatic custom feature setting...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 set showSequenceFeatures=true on loading a...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-29	tcofoegbu	JAL-1896 fixed NPE for RNA Helice without equivalent...	blob \| commitdiff \| diff to current
2015-09-28	tcofoegbu	JAL-1896 revised implementation to construct a ColourSc...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-02	gmungoc	JAL-1355 User error text externalised to message bundle	blob \| commitdiff \| diff to current
2015-08-21	tcofoegbu	JAL-1443 bug fix for loading pasted alignments from...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-07-30	tcofoegbu	JAL-1443 modified exception notifications	blob \| commitdiff \| diff to current
2015-07-21	tcofoegbu	JAL-1443 bugfix to prevent loading of unidentifiable...	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-02	tcofoegbu	JAL-1443 data validation for empty content before loadi...	blob \| commitdiff \| diff to current
2015-06-30	tcofoegbu	JAL-1641 round trip test/refactoring	blob \| commitdiff \| diff to current
2015-06-25	Jim Procter	JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...	blob \| commitdiff \| diff to current
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments	blob \| commitdiff \| diff to current
2015-06-15	Jim Procter	JAL-1775 FileLoader javadoc	blob \| commitdiff \| diff to current
2015-06-15	Jim Procter	JAL-1775 fix regression from commit 70f9c4700f20a8fa57e...	blob \| commitdiff \| diff to current
2015-06-12	tcofoegbu	JAL-1641 refactor	blob \| commitdiff \| diff to current
2015-06-05	tcofoegbu	JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...	blob \| commitdiff \| diff to current
2015-05-20	tcofoegbu	JAL-1541 minor code clean up, and added test for BioJsH...	blob \| commitdiff \| diff to current
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	blob \| commitdiff \| diff to current
2015-05-11	tcofoegbu	JAL-1641 cherry-picked changes into develop compatible...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Excluded HtmlFile.java dependencies from AppletFomatAdapter	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Modified biojs exporter/importer to preserve SequenceFe...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
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