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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob
[jalview.git] / src / jalview / io / StockholmFile.java
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-08-18 tcofoegbuJAL-1861 bugfix to allow parsing of stockholm files... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard... blob | commitdiff | diff to current
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment... blob | commitdiff | diff to current
2014-11-23 Jim ProcterJAL-1569 formatting blob | commitdiff | diff to current
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files... blob | commitdiff | diff to current
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align... blob | commitdiff | diff to current
2014-11-21 Jim ProcterJAL-1569 formatting blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 blob | commitdiff | diff to current
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... blob | commitdiff | diff to current
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test blob | commitdiff | diff to current
2013-02-13 Jim ProcterMerge branch 'jims_annotate3d_update' into menard_final... blob | commitdiff | diff to current
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... blob | commitdiff | diff to current
2013-02-06 jprocterJAL-1265 basic support for parsing database accessions... blob | commitdiff | diff to current
2013-02-05 jprocterformatting blob | commitdiff | diff to current
2012-12-12 NatashaOutput accession number for file in stockholm format blob | commitdiff | diff to current
2012-12-07 jprocterAnne reinstated general stockholm parser code but exten... blob | commitdiff | diff to current
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... blob | commitdiff | diff to current
2012-12-04 jprocterJAL-1140 - handled VARNA specific RNA exceptions within... blob | commitdiff | diff to current
2012-11-23 Natashastockholm file output code developed by Natasha Sherstneva blob | commitdiff | diff to current
2012-11-15 jprocterMerge branch 'develop' into menard blob | commitdiff | diff to current
2012-11-08 jproctertidy imports blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-08-14 Anne Menardlast version stay many bugs .. blob | commitdiff | diff to current
2012-07-10 Anne Menardv2 blob | commitdiff | diff to current
2012-07-05 Anne MenardAdd support RNAML format blob | commitdiff | diff to current
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... blob | commitdiff | diff to current
2011-07-25 janengelhardtStart merging of Laurens Code blob | commitdiff | diff to current
2011-07-21 jprocterensure contents of hash is extended JAL-876 blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-06-14 jprocterpatch for JAL-572 blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation... blob | commitdiff | diff to current
2008-01-29 jprocterFileParse object can be re-used to read different files... blob | commitdiff | diff to current
2008-01-22 jproctermore efficient parsing of large files, do not create... blob | commitdiff | diff to current
2008-01-21 jprocterfix regex for annotation subtype to use non-whitespace... blob | commitdiff | diff to current
2007-10-24 jprocteradd parsed PDB reference to sequences blob | commitdiff | diff to current
2007-06-18 jprocter1.1 methods blob | commitdiff | diff to current
2007-06-04 jprocterfix for 'RF' annotation tags and ensured parser is... blob | commitdiff | diff to current
2007-04-30 jprocterparse alignment properties and add annotation rows... blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-08-21 amwaterhouseRemove system.out blob | commitdiff | diff to current
2006-08-15 amwaterhouseAcknowledgement blob | commitdiff | diff to current
2006-08-14 amwaterhouseStockholm parser blob | commitdiff | diff to current