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JAL-1233 tidy up and use same RNA helix colours in colour by annotation and RNA helix...
[jalview.git]
/
src
/
jalview
/
bin
/
Cache.java
2015-08-11
tcofoegbu
add ability to launch jalview from exported html +...
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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diff to current
2014-11-28
Jim Procter
JAL-1522 output installation type to stdout
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commitdiff
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diff to current
2014-11-28
Jim Procter
JAL-1522 remove build/deployment details imported from...
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commitdiff
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diff to current
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
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diff to current
2014-11-17
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commitdiff
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diff to current
2014-11-13
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commitdiff
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diff to current
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
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commitdiff
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diff to current
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
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diff to current
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
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diff to current
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1519 - tidy build properties management code
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-02-21
Jim Procter
JAL-1448 reinstate non-locale sensitive code for readin...
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commitdiff
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-08-30
darolmar
i18n date/time handling
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-10-03
jprocter
JAL-1026 - insert a sensible default for proxy so Jalvi...
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diff to current
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
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diff to current
2012-02-29
jprocter
JAL-972 - refactored local source builder to registry...
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commitdiff
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diff to current
2012-02-13
jprocter
remove dead imports
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commitdiff
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diff to current
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
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diff to current
2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
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diff to current
2011-11-09
jprocter
(JAL-985,JAL-986) preferences documentation
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diff to current
2011-11-09
jprocter
(JAL-986) getter for integer user preference properties
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diff to current
2011-10-11
jprocter
normalised logo rendering (JAL-958)
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
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commitdiff
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diff to current
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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commitdiff
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diff to current
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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commitdiff
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diff to current
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
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diff to current
2011-07-22
jprocter
method to get a user default colour (JAL-234)
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commitdiff
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diff to current
2011-04-08
jprocter
imported properties via -props should never be overwritten
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commitdiff
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diff to current
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
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commitdiff
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diff to current
2011-02-04
jprocter
JAL-761
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diff to current
2010-11-04
jprocter
made ws warning dialog optional, and fixed its wording...
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-06-08
jprocter
followSelections flag now set via user preferences...
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commitdiff
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diff to current
2010-05-14
jprocter
allow initLogger to be called multiple times
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-14
jprocter
profile visualizations are now logos
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commitdiff
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diff to current
2010-03-30
jprocter
group autoannotation and consensus display settings
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commitdiff
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diff to current
2010-02-09
jprocter
groupURL link preference variables
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commitdiff
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diff to current
2009-10-13
jprocter
documented privacy settings, versioncheck controlled...
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diff to current
2009-06-19
jprocter
usepicr config property
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diff to current
2009-06-10
jprocter
com.boxysystems.jgogleanalytics is now an optional...
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diff to current
2009-06-08
jprocter
ga tracker option and apply gpl development license
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diff to current
2009-06-01
jprocter
first experiment with GA application use tracking
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diff to current
2009-03-17
jprocter
new sortbytree default config property
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commitdiff
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diff to current
2009-02-06
jprocter
showunconserved preference
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diff to current
2008-12-04
jprocter
local das source properties string constants and routin...
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commitdiff
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diff to current
2008-09-08
jprocter
view settings in view submenu and user preferences...
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commitdiff
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-07-18
jprocter
prevent exception when no default timeout is specified
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commitdiff
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diff to current
2008-04-29
jprocter
comments and version wget ping timeout fix for when...
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diff to current
2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
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commitdiff
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diff to current
2008-02-22
jprocter
typo for AXISLOGLEVEL constant
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diff to current
2008-01-11
jprocter
memory monitor, garbage collection and changed menu...
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commitdiff
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diff to current
2007-11-12
jprocter
begun adding string constants for source properties
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commitdiff
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diff to current
2007-09-28
jprocter
javadoc for jalview_properties tags
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diff to current
2007-05-28
jprocter
loglevel property constants and castor validation logge...
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diff to current
2007-04-26
jprocter
groovy support without compile-time dependency.
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diff to current
2007-02-07
amwaterhouse
Formatting
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diff to current
2006-12-19
amwaterhouse
org.vamsas is now uk.ac.vamsas
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diff to current
2006-11-02
amwaterhouse
Use system path separator char
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diff to current
2006-10-27
amwaterhouse
Rename old properties file before writing new
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commitdiff
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diff to current
2006-10-09
jprocter
fixed log4j complaints for vamsas logging (again)
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diff to current
2006-10-09
jprocter
fixed log4j complaints for vamsas logging.
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diff to current
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
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diff to current
2006-08-21
amwaterhouse
header updated
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diff to current
2006-04-07
amwaterhouse
ModellerOutput set in preferences
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diff to current
2006-01-12
jprocter
ensured properties are loaded before loggers are initia...
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diff to current
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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diff to current
2005-09-28
amwaterhouse
Remove latestVersion if null
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commitdiff
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diff to current
2005-09-28
amwaterhouse
Remove latestVersion if null
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commitdiff
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diff to current
2005-09-15
amwaterhouse
Logger moved to prefs so that class not found error...
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diff to current
2005-08-19
amwaterhouse
System.out if error setting properties
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commitdiff
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diff to current
2005-08-17
jprocter
<No Comment Entered>
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commitdiff
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diff to current
2005-08-17
amwaterhouse
Discover user colours
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commitdiff
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diff to current
2005-08-15
amwaterhouse
Jalview Version:
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diff to current
2005-08-09
amwaterhouse
Properties file is used in preference to viewport/cache...
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commitdiff
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diff to current
2005-08-03
amwaterhouse
Can run headless=true
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commitdiff
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diff to current
2005-07-11
amwaterhouse
Version changes
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commitdiff
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diff to current
2005-07-11
amwaterhouse
Add test case if code version not found
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commitdiff
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diff to current
2005-07-11
amwaterhouse
Release and build date methods changed
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commitdiff
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
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diff to current
2005-06-10
jprocter
added logs.Castor.level
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diff to current
2005-06-08
amwaterhouse
Formatted source
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commitdiff
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diff to current
2005-06-08
amwaterhouse
GPL license added
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commitdiff
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diff to current
2005-05-25
jprocter
added jalview.browser property so a linux user can...
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commitdiff
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diff to current
2005-05-24
amwaterhouse
URL getresource adds %20 for spaces. Use user.dir instead
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