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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
io
/
FeaturesFile.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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diff to current
2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
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diff to current
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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diff to current
2022-01-17
Ben Soares
JAL-3703 fix Gff3 shared InputStream with embedded...
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diff to current
2022-01-11
Ben Soares
JAL-3703 fix Gff3 shared InputStream with embedded...
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diff to current
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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diff to current
2020-08-10
Jim Procter
JAL-3691 toUpperCase(Locale.ROOT) for all standard...
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2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
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2020-04-16
gmungoc
JAL-3567 report mapped location for virtual features...
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2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2020-01-23
gmungoc
JAL-3121 'attributes map' in GFF3 without special ...
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2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-08-22
gmungoc
JAL-3121 round trip GFF attributes including map-valued...
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-06-18
gmungoc
JAL-3187 javadoc
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2019-06-18
gmungoc
JAL-3304 option to export linked features also for...
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2019-06-18
gmungoc
JAL-3304 option to export linked features in Jalview...
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diff to current
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
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2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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2018-05-24
gmungoc
JAL-2997 additional tests
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
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2017-05-25
gmungoc
JAL-2490 test coverage of empty and null feature group...
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2017-05-23
gmungoc
JAL-2490 find features for export as GFF, JAL-2548...
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2017-05-23
gmungoc
JAL-2490 tidy code and tests for feature export in...
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2017-05-23
gmungoc
JAL-2490 improved lookup of features for Export Feature...
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2017-05-22
gmungoc
JAL-2505 use setter not direct access to sf.description
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2017-05-19
gmungoc
JAL-2490 refactored test for 'hasFeatures'
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2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-07-18
gmungoc
fileFormat enum wip changes
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2016-07-11
gmungoc
file format enum wip changes
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2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
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2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
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2016-02-25
gmungoc
JAL-2015 parse/write Jalview feature format pushed...
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2016-02-24
gmungoc
JAL-2015 JAL-1956 rollout of FeatureColourI in place of
JAL-1956_featureStyles
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2016-01-26
gmungoc
JAL-1705 derive transcript sequences from gene sequence...
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2016-01-21
gmungoc
JAL-1705 include dummy sequences in returned alignment
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2015-12-22
gmungoc
JAL-653 GFF new/refactored helper classes
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2015-11-30
gmungoc
JAL-652 further refactoring / tests
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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2015-11-10
Jim Procter
JAL-653 added missing pragma string to processing filter
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-15
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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commitdiff
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-10-07
Jim Procter
JAL-1894 source formatting
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2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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diff to current
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
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2015-06-23
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-11
Jim Procter
JAL-653 tidy comments
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diff to current
2015-06-07
Jim Procter
JAL-653 basic GFF3 alignment import wrapper class
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diff to current
2015-06-06
Jim Procter
JAL-653 make sure dummy sequences created during GFF...
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diff to current
2015-06-06
Jim Procter
JAL-653 first stab at parsing GFF3 pragmas to support...
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2015-06-06
Jim Procter
JAL-653 gff version number field
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diff to current
2015-06-05
Jim Procter
JAL-653 set the warningMessage for the file source...
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diff to current
2015-06-05
Jim Procter
JAL-653 GFF attributes parsing mechanism, with first...
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commitdiff
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diff to current
2015-06-05
Jim Procter
JAL-653 trim initial tab in sequence feature ATTRIBUTES
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commitdiff
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diff to current
2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequen...
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commitdiff
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diff to current
2015-06-05
Jim Procter
JAL-1551 formatting
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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diff to current
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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diff to current
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
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commitdiff
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diff to current
2012-12-07
jprocter
formatting and error report cleanup
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commitdiff
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diff to current
2012-12-07
jprocter
proxy commit for Anne Menard <menard.annec@gmail.com...
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
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commitdiff
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diff to current
2012-11-15
jprocter
source formatting
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commitdiff
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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diff to current
2012-08-14
Anne Menard
last version stay many bugs ..
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diff to current
2012-07-16
Anne Menard
Merge branch 'develop' of https://source.jalview.org...
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2012-07-10
Anne Menard
v2
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2012-07-05
Anne Menard
Add support RNAML format
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