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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
renderer
/
AnnotationRenderer.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3088_finalbraceno...
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diff to current
2023-09-16
Ben Soares
JAL-4250 Fixed blue arrows in drawStemAnnot()
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2023-09-04
James Procter
JAL-3088 check for validEnd when working out whether...
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2023-09-04
James Procter
JAL-4250 fix location and height for RNA secondary...
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2023-09-04
James Procter
JAL-4250 rendition is way too obscure for me
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2023-08-24
Ben Soares
JAL-4250 Fix bug in vector rendition where more than...
improvement/JAL-4250_secondary_structure_annotation_antialias
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2023-08-24
Ben Soares
JAL-4250 Much simplified glyph creation removing most...
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2023-08-23
Ben Soares
JAL-4250 Updated jfreesvg to fix round stroke in linegraph.
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2023-08-23
Ben Soares
JAL-4250 Simplification of polygons and adjustments...
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2023-08-21
Ben Soares
JAL-4250 revert green to bright green
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2023-08-21
Ben Soares
JAL-4250 Conservative setting of ANTIALIAS and readjust...
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2023-08-18
Ben Soares
JAL-4250 Make secondary structure annotation shapes...
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2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2023-05-19
James Procter
JAL-1551 spotlessApply
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diff to current
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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2022-06-10
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2022-02-16
Jim Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
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2021-09-17
Jim Procter
JAL-3079 JAL-3055 remember to reset font transform...
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2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
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2020-08-13
gmungoc
JAL-3597 additional references nulled, bug in test...
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2020-07-14
gmungoc
JAL-3597 additional references nulled, bug in test...
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2019-06-18
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into merge...
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2019-04-18
hansonr
explicit Hashtable objects
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2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
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2019-03-27
hansonr
isJS cleanup
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2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
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2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
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2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
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2019-01-21
hansonr
minor Platform.isAMac() clean up
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2018-08-30
gmungoc
JAL-3055 refinements to alternatives to deriveFont
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2018-08-28
gmungoc
JAL-3055 corrected logo drawing in JS
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2018-08-28
gmungoc
JAL-3055 corrections to use of AffineTransform to scale...
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2018-08-27
gmungoc
JAL-3055 restore original deriveFont code for Java...
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2018-07-03
Jim Procter
JAL-2347 first pass at JAL-2347 - doesn’t quite work...
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2018-06-27
hansonr
Consensus LOGO done
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2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
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2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
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2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-03-16
kiramt
JAL-2388 Applied ViewportRanges to code
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2017-02-10
Jim Procter
Merge branch 'develop' into spike/matrix_annot
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2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
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2017-01-06
gmungoc
JAL-2371 correct Clustal, Blosum, PID colouring of...
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2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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2016-12-04
Jim Procter
JAL-2348 make debug message reporting renderer used...
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2016-12-04
Jim Procter
JAL-2348 JAL-2349 refactored contact map renderer and...
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2016-12-04
Jim Procter
JAL-2348 contact map renderer refactored from hacked...
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2016-12-02
Jim Procter
basic hack to get (almost) equal height density plot
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2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
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2016-09-22
gmungoc
JAL-2216 explicitly null AnnotationPanel and Annotation...
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2016-08-29
gmungoc
JAL-1841 robustness fix
bug/JAL-1841rnaSecStr
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2016-08-26
gmungoc
Merge branch 'develop' into bug/JAL-1841rnaSecStr
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2016-08-26
gmungoc
JAL-1854 comment switch case fallthrough
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2016-08-12
gmungoc
JAL-1841 bug fixes / code tidy for rna SS rendering...
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2016-04-04
Jim Procter
JAL-2001 drop isSelected(int) in favour of original...
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2016-04-04
Jim Procter
JAL-2001 use fast column selection test
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2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-07-15
gmungoc
JAL-1813 only pair up A-Z with a-z if annotation is RNA
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2015-07-08
gmungoc
JAL-1759 merge from develop
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2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-11-23
Jim Procter
employ test and secondary structure character for deter...
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2014-11-23
Jim Procter
JAL-1569 formatting
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2014-07-18
j.procter@dundee...
JAL-1520 switch between Protein and non-canonical RNA...
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2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
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diff to current
2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-10-15
Jim Procter
JAL-1159 Merging 2.8.1 patches and Anne Menards work...
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2013-07-12
Jim Procter
Merge branch 'JAL-1347' into develop
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2013-07-12
Jim Procter
JAL-1347 RNA Structure consensus follows the alignment...
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