JAL-4313 Patch AnnotationsMatcher to match nulls
[jalview.git] / test / jalview / util / MappingUtilsTest.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-04 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into...
2022-01-26 gmungocJAL-3725 helper methods for computing mapped feature...
2021-10-01 gmungocJAL-3725 helper methods for computing mapped feature...
2021-09-16 Ben SoaresJAL-3761 listToArray became rangeListToArray
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings
2021-03-04 Jim ProcterRevert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...
2021-02-04 gmungocJAL-3806 fix and test for one-to-many sequence mapping... bug/JAL-3806_mappingCoversCDS_reprise
2020-10-29 gmungocJAL-3700 mapped sequence group includes short (or all... patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3
2020-10-28 gmungocJAL-3725 helper methods for computing mapped feature...
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings
2020-10-22 gmungocJAL-3700 JAL-3763 create datasets for test sequences
2020-10-22 gmungocJAL-3700 additions and corrections to unit tests
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings
2020-10-08 gmungocJAL-3700 JAL-3763 create datasets for test sequences
2020-09-17 gmungocJAL-3700 additions and corrections to unit tests bug/JAL-3700_mapSequenceSelection
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
2020-07-21 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
2018-03-30 gmungocJAL-2599 move utility method to MappingUtils
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-01 gmungocJAL-2617 omit stop codon from synthesized CDS sequence
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea...
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing.
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 format tests
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-07-14 Jim ProcterJAL-2147 findMappingsBetweenSequenceAndOthers for scopi...
2016-07-11 gmungocfile format enum wip changes
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1...
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-11 gmungocJAL-1989 map hidden column ranges
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from...
2015-12-03 gmungocJAL-653 handle reverse strand mappings also
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-08 Jim ProcterJAL-1894 formatting
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-07 tcofoegbuJAL-1805 test envirionment separation
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe...
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop)
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch