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[jalview.git] / src / jalview / bin / Jalview.java

2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff
2019-07-02	Jim Procter	Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3334 fix - always load full SO to resolve the seque...	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3111 get rid of nasty tab characters	blob \| commitdiff \| diff to current
2019-06-19	Ben Soares	JAL-3321 Last pieces of the getdown-launcher.jar upgrad...	blob \| commitdiff \| diff to current
2019-06-17	Jim Procter	JAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-14	Jim Procter	JAL-3111 report build type and commit in stdout from...	blob \| commitdiff \| diff to current
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Some fixes in install4j template...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Added lines to check for updates...	blob \| commitdiff \| diff to current
2019-04-24	Jim Procter	Merge branch 'task/JAL-3225_Integration_Gradle_building...	blob \| commitdiff \| diff to current
2019-04-15	Ben Soares	JAL-3130 Helper classes to take Class Exceptions when...	blob \| commitdiff \| diff to current
2019-04-05	hansonr	fixes for Jalview command-line URI code	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	j2sNative clean-up. Fixes problem with second try of...	blob \| commitdiff \| diff to current
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11 and...	blob \| commitdiff \| diff to current
2019-03-27	gmungoc	JAL-3032 small formatting and isJS() tidy	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-06	gmungoc	JAL-3035 more das bits removed	blob \| commitdiff \| diff to current
2019-03-06	Jim Procter	JAL-3208 re-enable the setprop CLI arg, but only in...	blob \| commitdiff \| diff to current
2019-02-28	gmungoc	JAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB	blob \| commitdiff \| diff to current
2019-02-25	gmungoc	JAL-3032 Jalview (as JS) parse query params to main...	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-18	hansonr	canvas line/font/pixel fixes; menu accelerators;	blob \| commitdiff \| diff to current
2019-01-11	hansonr	(commented out but potentially useful) methods to tap...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-09-18	Jim Procter	JAL-3035 more dedasification	blob \| commitdiff \| diff to current
2018-09-11	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	blob \| commitdiff \| diff to current
2018-09-05	Jim Procter	JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3056 suppress menu options, and repoint Help, for...	blob \| commitdiff \| diff to current
2018-07-17	bsoares	JAL-3065	blob \| commitdiff \| diff to current
2018-07-11	Jim Procter	JAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor	blob \| commitdiff \| diff to current
2018-06-27	hansonr	JAL-3032 just the changes pulled already	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	JAL-3035 - jalview-das is no more !	blob \| commitdiff \| diff to current
2018-06-23	hansonr	JAL-3026 JDesktop/JInternalFrames support + relative...	blob \| commitdiff \| diff to current
2018-06-20	hansonr	update of javajs package; adds org.apache.harmony,...	blob \| commitdiff \| diff to current
2018-05-09	Jim Procter	JAL-2976 fixed bad equivalence check and implemented...	blob \| commitdiff \| diff to current
2018-05-02	Jim Procter	JAL-2976 fallback to Vaqua for Macs that don’t work...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 similarity options on TreeChooser panel affect...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 added UserColourScheme.toAppletParameter+test...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 getColour() renamed to getColourScheme(),...	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-14	tcofoegbu	JAL-2322 Refactored unified architecture for data ...	blob \| commitdiff \| diff to current
2016-11-11	tcofoegbu	JAL-2277 Refactored out duplicated method - printUnwrap...	blob \| commitdiff \| diff to current
2016-10-26	tcofoegbu	JAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	gmungoc	JAL-1191 revert to using SequenceOntologyLite due to...	blob \| commitdiff \| diff to current
2016-10-05	gmungoc	JAL-1191 configure full SO for desktop, SOLite for...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-08-08	gmungoc	JAL-2168 document '-nonews' parameter	blob \| commitdiff \| diff to current
2016-08-05	gmungoc	JAL-2168 skip news feed if parameter "-nonews" is supplied	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	Merge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding	blob \| commitdiff \| diff to current
2016-05-04	gmungoc	Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...	blob \| commitdiff \| diff to current
2016-05-02	gmungoc	JAL-1812 bind Groovy to Jalview rather than Desktop...	blob \| commitdiff \| diff to current
2016-04-28	gmungoc	JAL-2083 removed use of reflection for Groovy	blob \| commitdiff \| diff to current
2016-04-26	gmungoc	JAL-1981 catch any exception when setting QuaQua look...	blob \| commitdiff \| diff to current
2016-04-25	Jim Procter	JAL-2074 disable security manager at start up re: lopic...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-05	gmungoc	JAL-1812 set/return currentAlFrame for Groovy in headle...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-07-13	tcofoegbu	JAL-1788 added help documentation for biojson	blob \| commitdiff \| diff to current
2015-07-09	tcofoegbu	JAL-1769 added test for commandline input operations	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-06	tcofoegbu	JAL-1769 fixed headless execution mode and created...	blob \| commitdiff \| diff to current
2015-07-02	tcofoegbu	JAL-1443 data validation for empty content before loadi...	blob \| commitdiff \| diff to current
2015-06-05	tcofoegbu	JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...	blob \| commitdiff \| diff to current
2015-05-21	tcofoegbu	JAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	JAL-1688 compiler warnings removed	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-05	Charles Ofoegbu	merge commit	blob \| commitdiff \| diff to current
2015-02-04	Charles Ofoegbu	JAL-1643 Modified JalviewFileChooser to have a more...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-08	Charles Ofoegbu	Added annotation export configuration for Html export...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Merge branch 'features/JAL-1605_html-svg-export' into...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 added command line support for html export...	blob \| commitdiff \| diff to current
2014-12-05	gmungoc	JAL-1614 flag 'protein' removed	blob \| commitdiff \| diff to current
2014-12-05	gmungoc	JAL-1614 flag 'protein' removed	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1611 revise log level to reduce verbosity	blob \| commitdiff \| diff to current
2014-11-19	gmungoc	JAL-1342 new command-line parameter -jabaws <URL>	blob \| commitdiff \| diff to current
2014-11-17	Charles Ofoegbu	comand line support for svg generation	blob \| commitdiff \| diff to current
2014-11-17	Charles Ofoegbu	comand line support for svg generation	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
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