JAL-4026 increase timeouts for command line ops
[jalview.git] / schemas /
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF...
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype...
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
2019-04-05 gmungocJAL-3204 update to uniprot schema
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug...
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-12-03 gmungocJAL-3063 Castor removed from codebase
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin...
2018-09-18 gmungocJAL-3063 top level element added to colours schema...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume...
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
2018-05-07 gmungocJAL-1767 scheme DoubleMatrix type includes D and E...
2018-05-07 gmungocJAL-1767 save PCA D and E vectors instead of 'details...
2018-05-04 gmungocJAL-1767 schema and Castor changes for Save PCA in...
2018-04-27 gmungocJAL-2964 tree@linkToAllViews attribute added to project...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,...
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview...
2017-12-14 gmungocJAL-2843 schema and code changes to save colour by...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-06-20 Jim ProcterJAL-1369 updated project schema - flag on JSeq to mark...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute...
2015-06-18 gmungocJAL-892 schema changes (rnaViewer) for save Varna to...
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation...
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per...
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour...
2012-10-22 jprocterJalview 2.8 Source Header
2012-09-06 jprocterJAL-958 store normalised flag in jalview project
2012-07-06 jprocterJAL-976 - add support for storing service parameter...
2012-05-30 jprocterupdated schema to store and recover belowAlignment...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-08-03 jprocterrefactor schema to group swing window geometry attributes
2011-04-25 jprocterJAL-824 - patch to schema to allow jmol colouring state...
2011-04-21 jprocteradded graphHeight attribute to schema (JAL-784)
2011-02-18 jprocterremoved explicit 'linkedAlignmentPanel' flag
2011-02-17 jprocterfixes JAL-778 - flag to indicate binding between an...
2011-02-15 jprocterfixes JAL-775
2010-09-23 jprocterJalview 2.6 source licence
2010-09-06 jprocternew XML representation for web services parameters
2010-04-30 jprocterjalview 2.5 release banner
2010-04-14 jprocterprofile visualizations are now logos
2010-04-05 jprocterextend XML model for graduated feature colours, group...
2010-04-02 jprocterextended Colour element with additional optional attrib...
2009-06-08 jprocterapply gpl development license
2009-03-31 jprocterprototype for store/restore of feature colour gradient...
2009-02-06 jprocteradded showUnconserved property to group and view attributes
2008-12-15 jprocterstructureState element to structure view Id is a many...
2008-11-12 jprocterjalview XML schema update for 2.4.1 (or 2.5?) introduci...
2008-02-22 jproctersequenceId is a string, not an integer - allows generat...
2007-08-30 jprocteradded aligned codon frames, and dataset reference ids...
2007-05-28 jproctercastor mapping file schema (for mappings in resources...
2007-05-24 jprocterjalview 2.0 XML schema versions for backwards compatibi...
2007-05-17 jprocterupdated source generator properties for castor-1.1
2007-05-16 amwaterhousevisible
2007-05-01 amwaterhouseSeqset properties saved
2007-04-26 jproctertotal annotation score is a double for maximum precision.
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute...
2007-04-02 jprocteradded feature type order preference attribute and visib...
2007-03-22 amwaterhousesave structures
2007-01-31 amwaterhousealigned not used
2007-01-25 amwaterhouseAlignmentAnnotations require id
2006-11-15 amwaterhouseRIght align seq ids
2006-11-13 amwaterhouseSave text colours
2006-10-24 amwaterhouseShowConservation, quality, identity not used
2006-10-05 amwaterhouseViewname, sequencesetid, gatheredViews
2006-10-05 amwaterhouseSequences are optionalcvs diff vamsas.xsd
2006-09-15 amwaterhouseSimplified layout
2006-08-09 amwaterhouseSave links and scores and keyValues for features
2006-07-27 amwaterhouseSave ref to pdb file
2006-07-26 jprocterIgnore list created
2006-07-21 amwaterhousehidden seqs added
2006-07-21 amwaterhousedbrefs added
2006-05-16 amwaterhousegraphColour, graphGroup, more relaxed annotation requir...
2006-05-10 amwaterhousesequenceRef added to annotation
2006-04-05 amwaterhouseSave graph threshold and annotation colours
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