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JAL-4420 Tests for new FileUtils methods
[jalview.git]
/
schemas
/
2023-11-01
James Procter
Merge branch 'develop' into patch/JAL-4281_idwidthandan...
tree
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commitdiff
2023-09-08
James Procter
JAL-4281 store/restore ID width and manual adjustment...
tree
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commitdiff
2023-09-01
James Procter
JAL-4124 matrix is saved in dataset, with forward refer...
tree
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commitdiff
2023-08-29
James Procter
JAL-4124 Dataset holds list of MatrixType instances...
tree
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commitdiff
2023-07-18
James Procter
exploring making PAE storage in projects more efficient
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 column grouping model and methods moved to...
tree
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commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
tree
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commitdiff
2023-03-17
James Procter
JAL-4134 store/restore Newick tree for PAE annotation row
tree
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commitdiff
2023-03-15
James Procter
JAL-4134 JAL-3855 store/restore groups, tree and thresh...
tree
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commitdiff
2023-02-22
James Procter
JAL-4133 store/restore alignment view’s charWidth and...
tree
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commitdiff
2023-02-22
James Procter
JAL-3858 persist PAE matrix (only so far) as serialised...
tree
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commitdiff
2022-02-07
Jim Procter
JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit...
bug/JAL-3785autoOverviewTitle
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
tree
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commitdiff
2020-12-10
gmungoc
JAL-1713 save Overview title in project, don't save...
tree
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commitdiff
2020-12-10
gmungoc
JAL-1713 schema and JAXB changes to save Overview in...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-07
gmungoc
JAL-3187 Viewport schema attributes for showComplementF...
tree
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commitdiff
2019-06-07
gmungoc
JAL-3251 added optional attributes Sequence.biotype...
tree
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commitdiff
2019-06-07
gmungoc
JAL-2738 use GeneLocus extends DBRefEntry to hold chrom...
tree
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commitdiff
2019-04-05
gmungoc
JAL-3204 update to uniprot schema
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 comments re use of xjc to generate Java bindin...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB tool xjc recognises XML...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB generates enums for enume...
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
tree
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commitdiff
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
tree
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commitdiff
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-06-20
Jim Procter
JAL-1369 updated project schema - flag on JSeq to mark...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-13
tcofoegbu
JAL-1479 added SIFTS XSD and generated JAXB bindings...
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-03
gmungoc
JAL-1690 scaleProteinAsCdna new optional attribute...
tree
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commitdiff
2015-06-18
gmungoc
JAL-892 schema changes (rnaViewer) for save Varna to...
tree
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commitdiff
2015-06-10
Jim Procter
JAL-1764 add structure view type attribute to project...
schema/JAL-1764_structureViewAttribute
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-02
Jim Procter
JAL-1233 JAL-1066 fix for JAL-1397 test: allow per...
tree
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commitdiff
2014-04-25
Jim Procter
JAL-1177 allow jalview alignments to be saved that...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-10-17
Jim Procter
JAL-1397 store colour by sequence and originalColour...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-09-06
jprocter
JAL-958 store normalised flag in jalview project
tree
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commitdiff
2012-07-06
jprocter
JAL-976 - add support for storing service parameter...
tree
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commitdiff
2012-05-30
jprocter
updated schema to store and recover belowAlignment...
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-08-03
jprocter
refactor schema to group swing window geometry attributes
tree
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commitdiff
2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
tree
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commitdiff
2011-04-21
jprocter
added graphHeight attribute to schema (JAL-784)
tree
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commitdiff
2011-02-18
jprocter
removed explicit 'linkedAlignmentPanel' flag
tree
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commitdiff
2011-02-17
jprocter
fixes JAL-778 - flag to indicate binding between an...
tree
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commitdiff
2011-02-15
jprocter
fixes JAL-775
tree
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
tree
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commitdiff
2010-09-06
jprocter
new XML representation for web services parameters
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2010-04-14
jprocter
profile visualizations are now logos
tree
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commitdiff
2010-04-05
jprocter
extend XML model for graduated feature colours, group...
tree
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commitdiff
2010-04-02
jprocter
extended Colour element with additional optional attrib...
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
tree
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commitdiff
2009-03-31
jprocter
prototype for store/restore of feature colour gradient...
tree
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commitdiff
2009-02-06
jprocter
added showUnconserved property to group and view attributes
tree
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commitdiff
2008-12-15
jprocter
structureState element to structure view Id is a many...
tree
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commitdiff
2008-11-12
jprocter
jalview XML schema update for 2.4.1 (or 2.5?) introduci...
tree
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commitdiff
2008-02-22
jprocter
sequenceId is a string, not an integer - allows generat...
tree
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commitdiff
2007-08-30
jprocter
added aligned codon frames, and dataset reference ids...
tree
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commitdiff
2007-05-28
jprocter
castor mapping file schema (for mappings in resources...
tree
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commitdiff
2007-05-24
jprocter
jalview 2.0 XML schema versions for backwards compatibi...
tree
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commitdiff
2007-05-17
jprocter
updated source generator properties for castor-1.1
tree
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commitdiff
2007-05-16
amwaterhouse
visible
tree
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commitdiff
2007-05-01
amwaterhouse
Seqset properties saved
tree
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commitdiff
2007-04-26
jprocter
total annotation score is a double for maximum precision.
tree
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commitdiff
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
tree
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commitdiff
2007-04-02
jprocter
added feature type order preference attribute and visib...
tree
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commitdiff
2007-03-22
amwaterhouse
save structures
tree
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commitdiff
2007-01-31
amwaterhouse
aligned not used
tree
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commitdiff
2007-01-25
amwaterhouse
AlignmentAnnotations require id
tree
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commitdiff
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