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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
bin
/
Jalview.java
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
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diff to current
2019-03-06
gmungoc
JAL-3035 more das bits removed
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diff to current
2019-03-06
Jim Procter
JAL-3208 re-enable the setprop CLI arg, but only in...
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diff to current
2019-02-28
gmungoc
JAL-3032 any url parameter not "j2s..." taken as Jalvie...
Jalview-BH/JAL-3026-JAL-3063-JAXB
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2019-02-25
gmungoc
JAL-3032 Jalview (as JS) parse query params to main...
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diff to current
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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diff to current
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
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diff to current
2019-01-18
hansonr
canvas line/font/pixel fixes; menu accelerators;
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diff to current
2019-01-11
hansonr
(commented out but potentially useful) methods to tap...
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diff to current
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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2018-09-18
Jim Procter
JAL-3035 more dedasification
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-05
Jim Procter
JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7...
bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
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2018-07-23
gmungoc
JAL-3056 suppress menu options, and repoint Help, for...
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2018-07-17
bsoares
JAL-3065
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2018-07-11
Jim Procter
JAL-3048 refactored export settings to bean+dialog...
Jalview-BH/JAL-3048_exportSettingsrefactor
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2018-06-27
hansonr
JAL-3032 just the changes pulled already
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2018-06-26
Jim Procter
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...
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2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
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2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
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diff to current
2018-06-20
hansonr
update of javajs package; adds org.apache.harmony,...
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2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
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2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-02-27
gmungoc
JAL-1632 similarity options on TreeChooser panel affect...
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2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
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2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
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2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
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2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-10-05
gmungoc
JAL-1191 revert to using SequenceOntologyLite due to...
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2016-10-05
gmungoc
JAL-1191 configure full SO for desktop, SOLite for...
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2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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2016-08-08
gmungoc
JAL-2168 document '-nonews' parameter
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2016-08-05
gmungoc
JAL-2168 skip news feed if parameter "-nonews" is supplied
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2016-07-11
gmungoc
file format enum wip changes
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2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
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2016-05-04
gmungoc
Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
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2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
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2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
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2016-04-26
gmungoc
JAL-1981 catch any exception when setting QuaQua look...
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2016-04-25
Jim Procter
JAL-2074 disable security manager at start up re: lopic...
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headle...
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-07-13
tcofoegbu
JAL-1788 added help documentation for biojson
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2015-07-09
tcofoegbu
JAL-1769 added test for commandline input operations
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2015-07-08
gmungoc
JAL-1759 merge from develop
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2015-07-06
tcofoegbu
JAL-1769 fixed headless execution mode and created...
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2015-07-02
tcofoegbu
JAL-1443 data validation for empty content before loadi...
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2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
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2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
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2015-03-26
gmungoc
JAL-1688 compiler warnings removed
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-02-05
Charles Ofoegbu
merge commit
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2015-02-04
Charles Ofoegbu
JAL-1643 Modified JalviewFileChooser to have a more...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-12-08
Charles Ofoegbu
Added annotation export configuration for Html export...
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2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
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2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
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2014-12-05
gmungoc
JAL-1614 flag 'protein' removed
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2014-12-05
gmungoc
JAL-1614 flag 'protein' removed
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2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
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2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
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2014-11-17
Charles Ofoegbu
comand line support for svg generation
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2014-11-17
Charles Ofoegbu
comand line support for svg generation
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2014-09-23
darolmar
JAL-1355
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-06-13
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-06-13
Jim Procter
Merge branch 'JAL-1314_headlessFlag' into develop
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2013-06-13
Jim Procter
JAL-1314 allow 'nogui' and 'headless' as synonyms for...
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2012-12-07
jprocter
menu for choosing between 'protein' and 'RNA' mode...
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2012-11-15
jprocter
Merge branch 'develop' into menard
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2012-11-08
jprocter
tidy imports
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2012-10-22
jprocter
Jalview 2.8 Source Header
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diff to current
2012-10-04
jprocter
JAL-1188 - set the user agent to Jalview Desktop/$...
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diff to current
2012-10-01
jprocter
JAL-1183 showNews adds news discovery and display threa...
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2012-10-01
jprocter
JAL-1183 use dialog queue for usage statistics prompt
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2012-08-24
jprocter
Merge branch 'develop' into menard
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2012-08-24
jprocter
JAL-1087 skip processing any of the other command line...
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2012-08-14
Anne Menard
last version stay many bugs ..
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