JAL-3851 remove old interface
[jalview.git] / src / jalview / gui / TreeCanvas.java
2020-07-14 gmungocJAL-1421 last change tidied up properly
2020-07-14 gmungocJAL-1421 types added to nameHash and nodeHash maps
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-07 Jim ProcterJAL-3127 set ‘updateStructures’ flag for viewports...
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences...
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation
2018-11-09 Jim ProcterJAL-3127 polished setColor after review
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour...
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group...
2018-10-16 Jim Procterviewport flag to indicate when structure view needs...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-08-15 gmungocMerge branch 'feature/JAL-3080clearTreeGroups' into...
2018-08-15 gmungocJAL-3080 remove tree partition if no groups created feature/JAL-3080clearTreeGroups
2018-07-05 gmungocJAL-3058 refactored raising JColorChooser for JS compat...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi...
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-24 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
2016-09-01 gmungocJAL-1421 add generics to NJTree, refactor recursive...
2016-09-01 gmungocJAL-2077 do nothing in mousePressed if right button...
2016-08-31 gmungocJAL-2077 check for isPopupTrigger() in mousePressed...
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 Jim ProcterMerge branch 'bug/JAL-1923_290b2_group_annots' into...
2015-10-15 Jim ProcterJAL-1923 formatting
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify...
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2013-08-29 darolmari18n
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-10-02 jprocterJAL-1185 patch NPE - create new group for subtree on...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-07-22 jprocterfix NPE when annotation colourgradient is applied
2011-07-09 jprocterJAL-868 todo
2010-09-23 jprocterJalview 2.6 source licence
2010-09-08 jproctertrap NPE possiblity for trees that have no associated...
2010-06-04 jprocterupdate group annotation for new treegroups (JAL-552)
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-11-12 jprocternew ID constructor and selection sending
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2007-11-24 jprocteronly show bootstrap values if they are valid!
2007-09-06 jprocterfixes bootstrap bug noted by Chunlong Chen in email...
2007-08-22 jprocterfix serious repetitive exceptions if user closes colour...
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas...
2007-02-07 amwaterhouseFormatting
2007-01-31 amwaterhouseUnique name for new group and treegroup
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-11-23 amwaterhouseRegister TreePanel with paintrefresher
2006-11-22 amwaterhouseTreePanel added to PaintRefresher, not TreeCanvas
2006-11-22 amwaterhouseAssociate trees with views
2006-11-21 jproctercorrected subtree colour dialogbox title
2006-11-14 amwaterhouseset seqColours null
2006-11-13 amwaterhouseSequence colour in viewport
2006-11-08 amwaterhouseTooltip on mouseover
2006-10-05 amwaterhouseMultiple Views
2006-09-18 amwaterhouseclick node to select sequences
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