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[jalview.git] / src / jalview / gui / TreeCanvas.java

2020-07-14	gmungoc	JAL-1421 last change tidied up properly	blob \| commitdiff
2020-07-14	gmungoc	JAL-1421 types added to nameHash and nodeHash maps	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-07	Jim Procter	JAL-3127 set ‘updateStructures’ flag for viewports...	blob \| commitdiff \| diff to current
2018-12-20	Jim Procter	JAL-1767 port save/load PCA panel to JAXB - JAL-3063	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-11-19	Jim Procter	JAL-3127 drop redundant hidden representative sequences...	blob \| commitdiff \| diff to current
2018-11-19	Jim Procter	JAL-3127 tidier tree group colour -> view propagation	blob \| commitdiff \| diff to current
2018-11-09	Jim Procter	JAL-3127 polished setColor after review	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	JAL-3127 reinstate ability to set sequence ID colour...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	JAL-3127 use AlignViewportI.addGroup() to add group...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	viewport flag to indicate when structure view needs...	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-08-15	gmungoc	Merge branch 'feature/JAL-3080clearTreeGroups' into...	blob \| commitdiff \| diff to current
2018-08-15	gmungoc	JAL-3080 remove tree partition if no groups created feature/JAL-3080clearTreeGroups	blob \| commitdiff \| diff to current
2018-07-05	gmungoc	JAL-3058 refactored raising JColorChooser for JS compat...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-05	Jim Procter	JAL-2590 patch for rendering eggnog trees with polytomi...	blob \| commitdiff \| diff to current
2017-03-24	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-03-24	gmungoc	JAL-2464 fix cancel tree print behaviour	blob \| commitdiff \| diff to current
2017-03-23	gmungoc	JAL-2464 fix cancel tree print behaviour	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
2017-02-23	gmungoc	JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 getColour() renamed to getColourScheme(),...	blob \| commitdiff \| diff to current
2016-12-16	gmungoc	JAL-2360 refactoring for JalviewColourScheme enum,	blob \| commitdiff \| diff to current
2016-11-02	gmungoc	JAL-98 JAL-1854 encapsulate 'magic number' threshold...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-22	gmungoc	JAL-1421 typed ResidueProperties.propHash; JAL-2176...	blob \| commitdiff \| diff to current
2016-09-01	gmungoc	JAL-2077 check isPopupTrigger in mouseReleased not...	blob \| commitdiff \| diff to current
2016-09-01	gmungoc	JAL-1421 add generics to NJTree, refactor recursive...	blob \| commitdiff \| diff to current
2016-09-01	gmungoc	JAL-2077 do nothing in mousePressed if right button...	blob \| commitdiff \| diff to current
2016-08-31	gmungoc	JAL-2077 check for isPopupTrigger() in mousePressed...	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2077 - reinstate popups on osx	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	Merge branch 'bug/JAL-1923_290b2_group_annots' into...	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	JAL-1923 formatting	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	JAL-1923 add groups to codon-complement and notify...	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	JAL-1923 fix: don’t add group twice	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1497 check to see if tree structure is ready for...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 JAL-535 refactor sequence colour settings...	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-10-02	jprocter	JAL-1185 patch NPE - create new group for subtree on...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-22	jprocter	fix NPE when annotation colourgradient is applied	blob \| commitdiff \| diff to current
2011-07-09	jprocter	JAL-868 todo	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-08	jprocter	trap NPE possiblity for trees that have no associated...	blob \| commitdiff \| diff to current
2010-06-04	jprocter	update group annotation for new treegroups (JAL-552)	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-11-12	jprocter	new ID constructor and selection sending	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-07-18	jprocter	Sequence label colour stored for each sequence group	blob \| commitdiff \| diff to current
2007-11-24	jprocter	only show bootstrap values if they are valid!	blob \| commitdiff \| diff to current
2007-09-06	jprocter	fixes bootstrap bug noted by Chunlong Chen in email...	blob \| commitdiff \| diff to current
2007-08-22	jprocter	fix serious repetitive exceptions if user closes colour...	blob \| commitdiff \| diff to current
2007-07-13	jprocter	pickmanager on sequence and alignment position, vamsas...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-31	amwaterhouse	Unique name for new group and treegroup	blob \| commitdiff \| diff to current
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	blob \| commitdiff \| diff to current
2006-11-23	amwaterhouse	Register TreePanel with paintrefresher	blob \| commitdiff \| diff to current
2006-11-22	amwaterhouse	TreePanel added to PaintRefresher, not TreeCanvas	blob \| commitdiff \| diff to current
2006-11-22	amwaterhouse	Associate trees with views	blob \| commitdiff \| diff to current
2006-11-21	jprocter	corrected subtree colour dialogbox title	blob \| commitdiff \| diff to current
2006-11-14	amwaterhouse	set seqColours null	blob \| commitdiff \| diff to current
2006-11-13	amwaterhouse	Sequence colour in viewport	blob \| commitdiff \| diff to current
2006-11-08	amwaterhouse	Tooltip on mouseover	blob \| commitdiff \| diff to current
2006-10-05	amwaterhouse	Multiple Views	blob \| commitdiff \| diff to current
2006-09-18	amwaterhouse	click node to select sequences	blob \| commitdiff \| diff to current
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