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[jalview.git] / src / jalview / appletgui / AlignFrame.java

2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-27	Jim Procter	JAL-1508 make default font size 11pt for embedded menus...	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'JAL-1397' into develop	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	fix for JAL-1495 - initialise menu entry from current...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	Merge branch 'jims_marckhacks' into develop	blob \| commitdiff \| diff to current
2014-04-05	Jim Procter	Merge branch 'r281_JAL-1211' into develop	blob \| commitdiff \| diff to current
2014-04-05	Jim Procter	Merge branch 'r281_JAL-1211' into Release_2_8_1_Branch	blob \| commitdiff \| diff to current
2014-04-04	Jim Procter	JAL-1211 - pick up site-defined defined window geometry...	blob \| commitdiff \| diff to current
2014-04-04	Jim Procter	JAL-1335 typo and 'edit' action	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-02-17	Jim Procter	JAL-535 interface for GUI state update methods that...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 natasha's name on applet author list	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-10-15	Jim Procter	JAL-1159 Merging 2.8.1 patches and Anne Menards work...	blob \| commitdiff \| diff to current
2013-10-14	Jim Procter	Merge branch 'develop' into dev_from_2_8_1	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 documentation and consistent ordering for...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 group/ungroup sequences with command/ctrl...	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 refactor logic to AlignmentViewController	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2013-02-13	jprocter	fix merge conflicts for finess on JAL-1140 (introduced...	blob \| commitdiff \| diff to current
2012-12-07	jprocter	tidy import	blob \| commitdiff \| diff to current
2012-12-07	jprocter	remove mentions of non-functional RNAInteraction colour...	blob \| commitdiff \| diff to current
2012-12-07	jprocter	proxy commit for Anne Menard <menard.annec@gmail.com...	blob \| commitdiff \| diff to current
2012-12-04	jprocter	JAL-1140 - IO classes should only raise generic IOExcep...	blob \| commitdiff \| diff to current
2012-11-15	jprocter	Merge branch 'develop' into menard	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-11-07	jprocter	JAL-957 manual update to applet authorlist - need to...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 allow empty selections to pass through to...	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 normalise logo menu options in applet	blob \| commitdiff \| diff to current
2012-08-14	Anne Menard	last version stay many bugs ..	blob \| commitdiff \| diff to current
2012-07-10	Anne Menard	v2	blob \| commitdiff \| diff to current
2012-07-05	Anne Menard	Add support RNAML format	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor reordering code operating directly...	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-969 - refactor colourscheme machinery from GUI...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2012-05-24	jprocter	patch for occasional NPE when applet is quit	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1078 - extend applet cut'n'paste features/annotatio...	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067, JAL-1105 - refactor parser to fit Jalview...	blob \| commitdiff \| diff to current
2012-05-23	jprocter	todo JAL-1104 : functions to refactor	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	(JAL-885) RNA helix and purine pyrimidine colouring...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	(JAL-965) new api methods to allow features to be loade...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	blob \| commitdiff \| diff to current
2011-08-30	jprocter	patch for JAL-729 - NPE avoided and cut and paste impor...	blob \| commitdiff \| diff to current
2011-08-15	jprocter	JAL-904 added scrollToRow and scrollToColumn methods...	blob \| commitdiff \| diff to current
2011-07-28	jprocter	added 'since 2.x notes to parameters'. User configurabl...	blob \| commitdiff \| diff to current
2011-07-05	jprocter	Revert "Revert "needed for linkedapplets_ng.html (JAL...	blob \| commitdiff \| diff to current
2011-07-05	jprocter	Revert "needed for linkedapplets_ng.html (JAL-859,JAL...	blob \| commitdiff \| diff to current
2011-07-05	jprocter	needed for linkedapplets_ng.html (JAL-859,JAL-469)	blob \| commitdiff \| diff to current
2011-07-05	jprocter	whole frame should be validated.	blob \| commitdiff \| diff to current
2011-06-30	jprocter	set initial annotation panel height appropriately ...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-05-05	jprocter	javadoc and informative error message when external...	blob \| commitdiff \| diff to current
2011-02-14	jprocter	JAL-769	blob \| commitdiff \| diff to current
2011-02-14	jprocter	JAL-621 and JAL-564	blob \| commitdiff \| diff to current
2011-02-04	jprocter	group associated annotation and logos JAL-516 JAL-759	blob \| commitdiff \| diff to current
2011-01-21	jprocter	relaxed ID matching parameter JAL-753 and sortBy JAL-754	blob \| commitdiff \| diff to current
2011-01-17	jprocter	JAL-750 and JAL-451	blob \| commitdiff \| diff to current
2011-01-12	jprocter	javascript callback for selection, mousover, and functi...	blob \| commitdiff \| diff to current
2010-12-14	jprocter	refactored and patched for JAL-721	blob \| commitdiff \| diff to current
2010-09-23	jprocter	revised author list	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for addin...	blob \| commitdiff \| diff to current
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	refactored external structure viewer binding API calls...	blob \| commitdiff \| diff to current
2010-07-21	jprocter	URLs that begin with javascript: are opened in the...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	new ajax api methods for linking existing jmol viewers...	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patched for JAL-531 - only display full symbol distribu...	blob \| commitdiff \| diff to current
2010-06-06	jprocter	patch for JAL-542	blob \| commitdiff \| diff to current
2010-04-30	jprocter	sort by length	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	isAligned assertion (bug 0008144)	blob \| commitdiff \| diff to current
2010-04-29	jprocter	hide/show selected region menu entries and key bindings	blob \| commitdiff \| diff to current
2010-04-28	jprocter	make groups from selection	blob \| commitdiff \| diff to current
2010-04-26	jprocter	build date output in the About box, and build details...	blob \| commitdiff \| diff to current
2010-04-23	jprocter	refresh table method	blob \| commitdiff \| diff to current
2010-04-16	jprocter	export graduated feature colors	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-03-17	jprocter	sortbytree parameter added and undo re-instated for...	blob \| commitdiff \| diff to current
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