JAL-1233 tidy up and use same RNA helix colours in colour by annotation and RNA helix...
[jalview.git] / src / jalview / bin / Jalview.java
2015-07-13 tcofoegbuJAL-1788 added help documentation for biojson
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created...
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater
2015-03-26 gmungocJAL-1688 compiler warnings removed
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-05 Charles Ofoegbumerge commit
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export...
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-12-05 gmungocJAL-1614 flag 'protein' removed
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL>
2014-11-17 Charles Ofoegbucomand line support for svg generation
2014-11-17 Charles Ofoegbucomand line support for svg generation
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-06-13 Jim ProcterMerge branch 'JAL-1314_headlessFlag' into develop
2013-06-13 Jim ProcterJAL-1314 allow 'nogui' and 'headless' as synonyms for...
2012-12-07 jproctermenu for choosing between 'protein' and 'RNA' mode...
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$...
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display threa...
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt
2012-08-24 jprocterMerge branch 'develop' into menard
2012-08-24 jprocterJAL-1087 skip processing any of the other command line...
2012-08-14 Anne Menardlast version stay many bugs ..
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic...
2011-08-17 jprocterJAL-898 - ensure we only remove a clargs progress bar...
2011-08-05 jprocterfetch groovy script from URL (JAL-899) and show progres...
2011-07-28 jprocterrefer to local default setting for proxy when connecting to
2011-04-08 jprocterallow groovy scripts to be run when in headless mode...
2011-04-07 jprocterallow groovy scripts to be run when in headless mode...
2011-04-07 jprocterallow groovy scripts to be run when in headless mode...
2011-01-07 jprocterrefactored dropFile allowing known information to be...
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse...
2010-11-14 jprocterrefactored protocol check to jalview.io.FileParse
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-31 jprocternotes re JAL-629
2010-08-06 jprocterinteractive/batch mode test for groovy scripting (See...
2010-06-12 jprocterdocumented the -colour command line argument.
2010-06-09 jprocterOSX look and feel JAL-577
2010-05-14 jprocterstandard function for bootstrapping discovery threads
2010-04-30 jprocterjalview 2.5 release banner
2010-02-10 jprocterdas feature fetch followed by png output fixed (bug...
2009-11-09 jproctermore spin on GA prompt
2009-11-09 jprocteruser friendly GA and privacy statement
2009-10-13 jprocterprompt user to enable usage stats
2009-07-24 jprocterexplicitly grab all permissions for application executi...
2009-06-12 jprocterretrieve and init vamsas session from vdoc at URL
2009-06-08 jprocterclargs documentation, new vamsas session import and...
2009-06-01 jprocterfirst experiment with GA application use tracking
2009-03-17 jproctersortbytree/nosortbytree and defprop arguments. (defprop...
2008-12-04 jprocteradded local das sequence source CLI and documentation
2008-12-04 jprocterallow sequence source to be specified as sequence:mydas...
2008-09-04 jproctermerge from 2_4_Release branch
2008-06-30 jproctersafer retrieval of groovy scripts from URLs
2008-01-29 jproctergroovy scripts can be read from stdin
2008-01-11 jprocteradded groovy argument for launching a groovy script...
2007-11-12 jprocterjavadoc and introduction of dasserver and fetchdas...
2007-08-01 jprocteradded the '-tree' parameter to open a tree from the...
2007-07-30 jproctertest cc change revoked.
2007-07-30 jproctertest cc
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-04 amwaterhouseNew example file for version 2.3
2007-02-07 amwaterhouseFormatting
2007-02-06 jprocterhardwired default user questionnaire url and by default...
2007-02-05 jproctercommand line hook for questionnaire url argument.
2007-02-02 amwaterhouseLookandFeel must be set in headless state as window...
2006-11-06 amwaterhouseRemember fileName in alignFrame
2006-09-11 amwaterhouseError message if file not found moved for headless...
2006-08-21 amwaterhouseheader updated
2006-08-10 amwaterhousefile: is a URL
2006-07-07 amwaterhouseColour argument added, to mirror applet view
2006-06-09 amwaterhouseparseFeaturesFile
2006-05-11 amwaterhouseRecently loaded files, urls, append sequences to Alignment
2006-04-04 amwaterhouseAdd annoations from the command line
2006-04-04 amwaterhouseJalview2XML does not use static load
2006-03-08 amwaterhouseIdentifyFile should not be static
2006-01-12 jprocterensured properties are loaded before loggers are initia...
next