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Merge branch 'features/mchmmer' into features/mchmmer_merge_JAL-1950
[jalview.git]
/
src
/
jalview
/
bin
/
Cache.java
2018-03-23
gmungoc
JAL-2937 unused field removed
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commitdiff
2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
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diff to current
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
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diff to current
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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commitdiff
2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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diff to current
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
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commitdiff
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-08-08
TZVanaalten
JAL-2629 add ability to select hmmer binaries folder
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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commitdiff
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diff to current
2017-03-24
Jim Procter
JAL-2360 fix applet build by separating castor XML...
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diff to current
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
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commitdiff
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diff to current
2017-02-08
Jim Procter
JAL-2366 updated default URL to jalview.org/services...
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diff to current
2017-01-26
kiramt
JAL-2316 Updated to use identifiers jalview service
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diff to current
2016-12-23
gmungoc
JAL-2360 removed UserDefinedColours.userColourSchemes
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diff to current
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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diff to current
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
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diff to current
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
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diff to current
2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
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diff to current
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled PDB file parser configuratio...
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diff to current
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
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diff to current
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
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diff to current
2016-09-08
tcofoegbu
JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...
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diff to current
2016-08-22
gmungoc
JAL-1448 corrected for backwards compatibility for...
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commitdiff
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diff to current
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
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commitdiff
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diff to current
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
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commitdiff
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diff to current
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
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diff to current
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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diff to current
2016-07-20
Jim Procter
JAL-1926 JAL-2106 don’t use PDB database constant as...
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diff to current
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
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commitdiff
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diff to current
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
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diff to current
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
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diff to current
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
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commitdiff
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diff to current
2016-03-24
tcofoegbu
JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
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diff to current
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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diff to current
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
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diff to current
2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
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commitdiff
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diff to current
2015-11-25
tcofoegbu
JAL-1479 applet build debug
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commitdiff
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diff to current
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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diff to current
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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diff to current
2015-09-16
gmungoc
JAL-1882 variable renamed to avoid confusion with membe...
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-08-11
tcofoegbu
add ability to launch jalview from exported html +...
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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diff to current
2014-11-28
Jim Procter
JAL-1522 output installation type to stdout
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commitdiff
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diff to current
2014-11-28
Jim Procter
JAL-1522 remove build/deployment details imported from...
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commitdiff
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diff to current
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
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diff to current
2014-11-17
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commitdiff
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diff to current
2014-11-13
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
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commitdiff
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diff to current
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
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commitdiff
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diff to current
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
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commitdiff
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diff to current
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
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commitdiff
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diff to current
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1519 - tidy build properties management code
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-02-21
Jim Procter
JAL-1448 reinstate non-locale sensitive code for readin...
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commitdiff
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-08-30
darolmar
i18n date/time handling
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-10-03
jprocter
JAL-1026 - insert a sensible default for proxy so Jalvi...
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diff to current
2012-03-30
jprocter
Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...
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diff to current
2012-02-29
jprocter
JAL-972 - refactored local source builder to registry...
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commitdiff
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diff to current
2012-02-13
jprocter
remove dead imports
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diff to current
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
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diff to current
2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
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diff to current
2011-11-09
jprocter
(JAL-985,JAL-986) preferences documentation
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diff to current
2011-11-09
jprocter
(JAL-986) getter for integer user preference properties
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diff to current
2011-10-11
jprocter
normalised logo rendering (JAL-958)
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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diff to current
2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
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commitdiff
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diff to current
2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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commitdiff
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diff to current
2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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commitdiff
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diff to current
2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
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commitdiff
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diff to current
2011-07-22
jprocter
method to get a user default colour (JAL-234)
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commitdiff
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diff to current
2011-04-08
jprocter
imported properties via -props should never be overwritten
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commitdiff
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diff to current
2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
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commitdiff
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diff to current
2011-02-04
jprocter
JAL-761
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commitdiff
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diff to current
2010-11-04
jprocter
made ws warning dialog optional, and fixed its wording...
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-06-08
jprocter
followSelections flag now set via user preferences...
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commitdiff
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diff to current
2010-05-14
jprocter
allow initLogger to be called multiple times
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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diff to current
2010-04-14
jprocter
profile visualizations are now logos
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commitdiff
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diff to current
2010-03-30
jprocter
group autoannotation and consensus display settings
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