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JAL-1503 update version in GPL header
author
Jim Procter
<jprocter@dundee.ac.uk>
Thu, 22 May 2014 14:06:39 +0000
(15:06 +0100)
committer
Jim Procter
<jprocter@dundee.ac.uk>
Thu, 22 May 2014 14:06:39 +0000
(15:06 +0100)
845 files changed:
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diff --git
a/build.xml
b/build.xml
index
82cbabb
..
ba538c2
100755
(executable)
--- a/
build.xml
+++ b/
build.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/AddingGroovySupport.html
b/doc/AddingGroovySupport.html
index
97083e8
..
5556629
100644
(file)
--- a/
doc/AddingGroovySupport.html
+++ b/
doc/AddingGroovySupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/JalviewRNASupport.html
b/doc/JalviewRNASupport.html
index
62764df
..
e068f3b
100644
(file)
--- a/
doc/JalviewRNASupport.html
+++ b/
doc/JalviewRNASupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/building.html
b/doc/building.html
index
f07e2d8
..
04639d5
100755
(executable)
--- a/
doc/building.html
+++ b/
doc/building.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/developing.html
b/doc/developing.html
index
3715094
..
330a156
100644
(file)
--- a/
doc/developing.html
+++ b/
doc/developing.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/index.html
b/doc/index.html
index
5e43906
..
7d3a278
100644
(file)
--- a/
doc/index.html
+++ b/
doc/index.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/newdmobj.html
b/doc/newdmobj.html
index
056665c
..
e564371
100644
(file)
--- a/
doc/newdmobj.html
+++ b/
doc/newdmobj.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/ie6.css
b/examples-jbake/assets/css/ie6.css
index
d89b6c3
..
f333ebc
100644
(file)
--- a/
examples-jbake/assets/css/ie6.css
+++ b/
examples-jbake/assets/css/ie6.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/ie7.css
b/examples-jbake/assets/css/ie7.css
index
17c20e2
..
159d07e
100644
(file)
--- a/
examples-jbake/assets/css/ie7.css
+++ b/
examples-jbake/assets/css/ie7.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/reset.css
b/examples-jbake/assets/css/reset.css
index
ef8e5bc
..
17a8f7b
100644
(file)
--- a/
examples-jbake/assets/css/reset.css
+++ b/
examples-jbake/assets/css/reset.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/style.css
b/examples-jbake/assets/css/style.css
index
466d507
..
344182b
100644
(file)
--- a/
examples-jbake/assets/css/style.css
+++ b/
examples-jbake/assets/css/style.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/exampleFeatures.txt
b/examples-jbake/assets/exampleFeatures.txt
index
210aab2
..
c16c3d8
100755
(executable)
--- a/
examples-jbake/assets/exampleFeatures.txt
+++ b/
examples-jbake/assets/exampleFeatures.txt
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/examples-jbake/assets/javascript/jalview.js
b/examples-jbake/assets/javascript/jalview.js
index
f827db5
..
293b73a
100644
(file)
--- a/
examples-jbake/assets/javascript/jalview.js
+++ b/
examples-jbake/assets/javascript/jalview.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/templates/header.ftl
b/examples-jbake/templates/header.ftl
index
1c3e9fc
..
d42b314
100644
(file)
--- a/
examples-jbake/templates/header.ftl
+++ b/
examples-jbake/templates/header.ftl
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/appletParameters.html
b/examples/appletParameters.html
index
fe29b2e
..
7eaf9f7
100644
(file)
--- a/
examples/appletParameters.html
+++ b/
examples/appletParameters.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/applets.html
b/examples/applets.html
index
bb6bb10
..
d715a4d
100755
(executable)
--- a/
examples/applets.html
+++ b/
examples/applets.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie6.css
b/examples/css/ie6.css
index
d89b6c3
..
f333ebc
100644
(file)
--- a/
examples/css/ie6.css
+++ b/
examples/css/ie6.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie7.css
b/examples/css/ie7.css
index
17c20e2
..
159d07e
100644
(file)
--- a/
examples/css/ie7.css
+++ b/
examples/css/ie7.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/reset.css
b/examples/css/reset.css
index
ef8e5bc
..
17a8f7b
100644
(file)
--- a/
examples/css/reset.css
+++ b/
examples/css/reset.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/style.css
b/examples/css/style.css
index
466d507
..
344182b
100644
(file)
--- a/
examples/css/style.css
+++ b/
examples/css/style.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/embedded.html
b/examples/embedded.html
index
7bae979
..
6072294
100644
(file)
--- a/
examples/embedded.html
+++ b/
examples/embedded.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/embeddedWJmol.html
b/examples/embeddedWJmol.html
index
af4df17
..
77ac6e7
100644
(file)
--- a/
examples/embeddedWJmol.html
+++ b/
examples/embeddedWJmol.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/exampleFeatures.txt
b/examples/exampleFeatures.txt
index
210aab2
..
c16c3d8
100755
(executable)
--- a/
examples/exampleFeatures.txt
+++ b/
examples/exampleFeatures.txt
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/examples/formComplete.html
b/examples/formComplete.html
index
f4e96ce
..
f4833a6
100644
(file)
--- a/
examples/formComplete.html
+++ b/
examples/formComplete.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/jalviewLiteJs.html
b/examples/jalviewLiteJs.html
index
3f1c752
..
2b8a29d
100644
(file)
--- a/
examples/jalviewLiteJs.html
+++ b/
examples/jalviewLiteJs.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascript/jalview.js
b/examples/javascript/jalview.js
index
f827db5
..
293b73a
100644
(file)
--- a/
examples/javascript/jalview.js
+++ b/
examples/javascript/jalview.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascriptLaunch.html
b/examples/javascriptLaunch.html
index
ea8619f
..
e7e7232
100644
(file)
--- a/
examples/javascriptLaunch.html
+++ b/
examples/javascriptLaunch.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/linkedapplets_ng.html
b/examples/linkedapplets_ng.html
index
1ad5423
..
553d8a4
100644
(file)
--- a/
examples/linkedapplets_ng.html
+++ b/
examples/linkedapplets_ng.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_applets.html
b/examples/u_applets.html
index
f34a702
..
378a895
100644
(file)
--- a/
examples/u_applets.html
+++ b/
examples/u_applets.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_embedded.html
b/examples/u_embedded.html
index
39d9e58
..
6ec04e5
100644
(file)
--- a/
examples/u_embedded.html
+++ b/
examples/u_embedded.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_embeddedWJmol.html
b/examples/u_embeddedWJmol.html
index
4aa7035
..
02a4f10
100644
(file)
--- a/
examples/u_embeddedWJmol.html
+++ b/
examples/u_embeddedWJmol.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_formComplete.html
b/examples/u_formComplete.html
index
a8daafd
..
15c473e
100644
(file)
--- a/
examples/u_formComplete.html
+++ b/
examples/u_formComplete.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_javascriptLaunch.html
b/examples/u_javascriptLaunch.html
index
0e786c5
..
b34e195
100644
(file)
--- a/
examples/u_javascriptLaunch.html
+++ b/
examples/u_javascriptLaunch.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_linkedapplets_ng.html
b/examples/u_linkedapplets_ng.html
index
4e4b447
..
e605c1a
100644
(file)
--- a/
examples/u_linkedapplets_ng.html
+++ b/
examples/u_linkedapplets_ng.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/help.hs
b/help/help.hs
index
b791d35
..
c56ee9f
100755
(executable)
--- a/
help/help.hs
+++ b/
help/help.hs
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
\r
<!--
\r
<?xml version="1.0" encoding="ISO-8859-1" ?>
\r
<!--
\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
\r
* Copyright (C) 2014 The Jalview Authors
\r
*
\r
* This file is part of Jalview.
\r
* Copyright (C) 2014 The Jalview Authors
\r
*
\r
* This file is part of Jalview.
\r
diff --git
a/help/help.jhm
b/help/help.jhm
index
3587079
..
08d3ca9
100755
(executable)
--- a/
help/help.jhm
+++ b/
help/help.jhm
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
c0e9b66
..
4ff36ba
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/consensus.html
b/help/html/calculations/consensus.html
index
12d832f
..
aa619e6
100644
(file)
--- a/
help/html/calculations/consensus.html
+++ b/
help/html/calculations/consensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/conservation.html
b/help/html/calculations/conservation.html
index
b9d4b6f
..
e67c1fa
100755
(executable)
--- a/
help/html/calculations/conservation.html
+++ b/
help/html/calculations/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pairwise.html
b/help/html/calculations/pairwise.html
index
edd0ae4
..
52afe7c
100755
(executable)
--- a/
help/html/calculations/pairwise.html
+++ b/
help/html/calculations/pairwise.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pca.html
b/help/html/calculations/pca.html
index
db7be9b
..
0d6e85e
100755
(executable)
--- a/
help/html/calculations/pca.html
+++ b/
help/html/calculations/pca.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/quality.html
b/help/html/calculations/quality.html
index
6f5f000
..
dc27e97
100755
(executable)
--- a/
help/html/calculations/quality.html
+++ b/
help/html/calculations/quality.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/recoverInputdata.html
b/help/html/calculations/recoverInputdata.html
index
bb640b7
..
7a40a44
100644
(file)
--- a/
help/html/calculations/recoverInputdata.html
+++ b/
help/html/calculations/recoverInputdata.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/redundancy.html
b/help/html/calculations/redundancy.html
index
89d92f1
..
2dcc475
100755
(executable)
--- a/
help/html/calculations/redundancy.html
+++ b/
help/html/calculations/redundancy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/scorematrices.html
b/help/html/calculations/scorematrices.html
index
100e21c
..
fb3b0b2
100644
(file)
--- a/
help/html/calculations/scorematrices.html
+++ b/
help/html/calculations/scorematrices.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/sorting.html
b/help/html/calculations/sorting.html
index
bbbca5c
..
bf60b88
100755
(executable)
--- a/
help/html/calculations/sorting.html
+++ b/
help/html/calculations/sorting.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/structureconsensus.html
b/help/html/calculations/structureconsensus.html
index
4093777
..
af316ed
100755
(executable)
--- a/
help/html/calculations/structureconsensus.html
+++ b/
help/html/calculations/structureconsensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/tree.html
b/help/html/calculations/tree.html
index
9591f39
..
ba3582b
100755
(executable)
--- a/
help/html/calculations/tree.html
+++ b/
help/html/calculations/tree.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/treeviewer.html
b/help/html/calculations/treeviewer.html
index
dad8483
..
2f03d65
100755
(executable)
--- a/
help/html/calculations/treeviewer.html
+++ b/
help/html/calculations/treeviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/abovePID.html
b/help/html/colourSchemes/abovePID.html
index
6ecaf98
..
30b9846
100755
(executable)
--- a/
help/html/colourSchemes/abovePID.html
+++ b/
help/html/colourSchemes/abovePID.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/annotationColouring.html
b/help/html/colourSchemes/annotationColouring.html
index
2d9fb10
..
ba9cbdd
100755
(executable)
--- a/
help/html/colourSchemes/annotationColouring.html
+++ b/
help/html/colourSchemes/annotationColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/blosum.html
b/help/html/colourSchemes/blosum.html
index
35a8019
..
fdc3f19
100755
(executable)
--- a/
help/html/colourSchemes/blosum.html
+++ b/
help/html/colourSchemes/blosum.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/buried.html
b/help/html/colourSchemes/buried.html
index
facc4ba
..
640b753
100755
(executable)
--- a/
help/html/colourSchemes/buried.html
+++ b/
help/html/colourSchemes/buried.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/clustal.html
b/help/html/colourSchemes/clustal.html
index
45125e5
..
1737280
100755
(executable)
--- a/
help/html/colourSchemes/clustal.html
+++ b/
help/html/colourSchemes/clustal.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/conservation.html
b/help/html/colourSchemes/conservation.html
index
1ed1207
..
1b3d93a
100755
(executable)
--- a/
help/html/colourSchemes/conservation.html
+++ b/
help/html/colourSchemes/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/helix.html
b/help/html/colourSchemes/helix.html
index
f447abf
..
1f1e1b8
100755
(executable)
--- a/
help/html/colourSchemes/helix.html
+++ b/
help/html/colourSchemes/helix.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/hydrophobic.html
b/help/html/colourSchemes/hydrophobic.html
index
ade1ecf
..
dd5a334
100755
(executable)
--- a/
help/html/colourSchemes/hydrophobic.html
+++ b/
help/html/colourSchemes/hydrophobic.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/index.html
b/help/html/colourSchemes/index.html
index
a88c44f
..
b344330
100755
(executable)
--- a/
help/html/colourSchemes/index.html
+++ b/
help/html/colourSchemes/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/nucleotide.html
b/help/html/colourSchemes/nucleotide.html
index
c7c3f34
..
90e40ef
100755
(executable)
--- a/
help/html/colourSchemes/nucleotide.html
+++ b/
help/html/colourSchemes/nucleotide.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/pid.html
b/help/html/colourSchemes/pid.html
index
d85dd4c
..
0839749
100755
(executable)
--- a/
help/html/colourSchemes/pid.html
+++ b/
help/html/colourSchemes/pid.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/purinepyrimidine.html
b/help/html/colourSchemes/purinepyrimidine.html
index
0e17e3f
..
2438416
100644
(file)
--- a/
help/html/colourSchemes/purinepyrimidine.html
+++ b/
help/html/colourSchemes/purinepyrimidine.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/rnahelicesColouring.html
b/help/html/colourSchemes/rnahelicesColouring.html
index
e683d8a
..
daca474
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(file)
--- a/
help/html/colourSchemes/rnahelicesColouring.html
+++ b/
help/html/colourSchemes/rnahelicesColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/strand.html
b/help/html/colourSchemes/strand.html
index
d9bcb66
..
58f242e
100755
(executable)
--- a/
help/html/colourSchemes/strand.html
+++ b/
help/html/colourSchemes/strand.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/taylor.html
b/help/html/colourSchemes/taylor.html
index
1661b6e
..
6ff5c7f
100755
(executable)
--- a/
help/html/colourSchemes/taylor.html
+++ b/
help/html/colourSchemes/taylor.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/textcolour.html
b/help/html/colourSchemes/textcolour.html
index
1ddc66a
..
597f618
100644
(file)
--- a/
help/html/colourSchemes/textcolour.html
+++ b/
help/html/colourSchemes/textcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/turn.html
b/help/html/colourSchemes/turn.html
index
e77e2b7
..
2860bc8
100755
(executable)
--- a/
help/html/colourSchemes/turn.html
+++ b/
help/html/colourSchemes/turn.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/user.html
b/help/html/colourSchemes/user.html
index
cf841a9
..
015fbe5
100755
(executable)
--- a/
help/html/colourSchemes/user.html
+++ b/
help/html/colourSchemes/user.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/zappo.html
b/help/html/colourSchemes/zappo.html
index
cfa75f3
..
362d98c
100755
(executable)
--- a/
help/html/colourSchemes/zappo.html
+++ b/
help/html/colourSchemes/zappo.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/editing/index.html
b/help/html/editing/index.html
index
0139be8
..
eddea18
100755
(executable)
--- a/
help/html/editing/index.html
+++ b/
help/html/editing/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotation.html
b/help/html/features/annotation.html
index
e2d471e
..
0da3a88
100755
(executable)
--- a/
help/html/features/annotation.html
+++ b/
help/html/features/annotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotationsFormat.html
b/help/html/features/annotationsFormat.html
index
1820c6a
..
a0a6dae
100755
(executable)
--- a/
help/html/features/annotationsFormat.html
+++ b/
help/html/features/annotationsFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
fe5c801
..
ac44c46
100644
(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/codingfeatures.html
b/help/html/features/codingfeatures.html
index
7343620
..
7b15ef6
100644
(file)
--- a/
help/html/features/codingfeatures.html
+++ b/
help/html/features/codingfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/commandline.html
b/help/html/features/commandline.html
index
7a4be57
..
da47ca5
100644
(file)
--- a/
help/html/features/commandline.html
+++ b/
help/html/features/commandline.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/creatinFeatures.html
b/help/html/features/creatinFeatures.html
index
bdee259
..
ad9cdc2
100644
(file)
--- a/
help/html/features/creatinFeatures.html
+++ b/
help/html/features/creatinFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/cursorMode.html
b/help/html/features/cursorMode.html
index
ccb84ee
..
34fe0e1
100755
(executable)
--- a/
help/html/features/cursorMode.html
+++ b/
help/html/features/cursorMode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dasfeatures.html
b/help/html/features/dasfeatures.html
index
d97d7a2
..
7e2e7e2
100644
(file)
--- a/
help/html/features/dasfeatures.html
+++ b/
help/html/features/dasfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dassettings.html
b/help/html/features/dassettings.html
index
0170a8f
..
45d150e
100644
(file)
--- a/
help/html/features/dassettings.html
+++ b/
help/html/features/dassettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/editingFeatures.html
b/help/html/features/editingFeatures.html
index
0d0dd72
..
2856e70
100644
(file)
--- a/
help/html/features/editingFeatures.html
+++ b/
help/html/features/editingFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresFormat.html
b/help/html/features/featuresFormat.html
index
0f63b33
..
d1337eb
100755
(executable)
--- a/
help/html/features/featuresFormat.html
+++ b/
help/html/features/featuresFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featureschemes.html
b/help/html/features/featureschemes.html
index
8b88fc3
..
64a4c53
100644
(file)
--- a/
help/html/features/featureschemes.html
+++ b/
help/html/features/featureschemes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresettings.html
b/help/html/features/featuresettings.html
index
ed18ae7
..
9335d93
100755
(executable)
--- a/
help/html/features/featuresettings.html
+++ b/
help/html/features/featuresettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/groovy.html
b/help/html/features/groovy.html
index
56ec86c
..
d4b9f7f
100644
(file)
--- a/
help/html/features/groovy.html
+++ b/
help/html/features/groovy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/hiddenRegions.html
b/help/html/features/hiddenRegions.html
index
7d2d88f
..
540a961
100644
(file)
--- a/
help/html/features/hiddenRegions.html
+++ b/
help/html/features/hiddenRegions.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jalarchive.html
b/help/html/features/jalarchive.html
index
cef3a69
..
f820523
100755
(executable)
--- a/
help/html/features/jalarchive.html
+++ b/
help/html/features/jalarchive.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jmol.html
b/help/html/features/jmol.html
index
19f1761
..
21241d3
100644
(file)
--- a/
help/html/features/jmol.html
+++ b/
help/html/features/jmol.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/multipleViews.html
b/help/html/features/multipleViews.html
index
6d20d30
..
f726507
100644
(file)
--- a/
help/html/features/multipleViews.html
+++ b/
help/html/features/multipleViews.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/newkeystrokes.html
b/help/html/features/newkeystrokes.html
index
8830bb1
..
f17c278
100644
(file)
--- a/
help/html/features/newkeystrokes.html
+++ b/
help/html/features/newkeystrokes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/overview.html
b/help/html/features/overview.html
index
dcd625a
..
7d05848
100755
(executable)
--- a/
help/html/features/overview.html
+++ b/
help/html/features/overview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/pdbviewer.html
b/help/html/features/pdbviewer.html
index
c1c6ae7
..
bfed174
100755
(executable)
--- a/
help/html/features/pdbviewer.html
+++ b/
help/html/features/pdbviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/preferences.html
b/help/html/features/preferences.html
index
e68e44e
..
259b0f4
100755
(executable)
--- a/
help/html/features/preferences.html
+++ b/
help/html/features/preferences.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/search.html
b/help/html/features/search.html
index
509316b
..
6845be9
100755
(executable)
--- a/
help/html/features/search.html
+++ b/
help/html/features/search.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfeatures.html
b/help/html/features/seqfeatures.html
index
fe8de4e
..
0b14348
100755
(executable)
--- a/
help/html/features/seqfeatures.html
+++ b/
help/html/features/seqfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfetch.html
b/help/html/features/seqfetch.html
index
424841e
..
212605e
100755
(executable)
--- a/
help/html/features/seqfetch.html
+++ b/
help/html/features/seqfetch.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqmappings.html
b/help/html/features/seqmappings.html
index
b34e1b8
..
157a591
100644
(file)
--- a/
help/html/features/seqmappings.html
+++ b/
help/html/features/seqmappings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/varna.html
b/help/html/features/varna.html
index
69c3e36
..
5b7fed1
100644
(file)
--- a/
help/html/features/varna.html
+++ b/
help/html/features/varna.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/viewingpdbs.html
b/help/html/features/viewingpdbs.html
index
144489b
..
048f0ef
100755
(executable)
--- a/
help/html/features/viewingpdbs.html
+++ b/
help/html/features/viewingpdbs.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/wrap.html
b/help/html/features/wrap.html
index
a7bec32
..
4835317
100755
(executable)
--- a/
help/html/features/wrap.html
+++ b/
help/html/features/wrap.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/index.html
b/help/html/index.html
index
7fc5ba2
..
ae12479
100755
(executable)
--- a/
help/html/index.html
+++ b/
help/html/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/export.html
b/help/html/io/export.html
index
9dae0bd
..
a452615
100755
(executable)
--- a/
help/html/io/export.html
+++ b/
help/html/io/export.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/exportseqreport.html
b/help/html/io/exportseqreport.html
index
c497571
..
837164b
100644
(file)
--- a/
help/html/io/exportseqreport.html
+++ b/
help/html/io/exportseqreport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/fileformats.html
b/help/html/io/fileformats.html
index
517da1a
..
6138203
100755
(executable)
--- a/
help/html/io/fileformats.html
+++ b/
help/html/io/fileformats.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/index.html
b/help/html/io/index.html
index
5794a7a
..
d803fb0
100755
(executable)
--- a/
help/html/io/index.html
+++ b/
help/html/io/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/modellerpir.html
b/help/html/io/modellerpir.html
index
42a480c
..
56d0cfc
100755
(executable)
--- a/
help/html/io/modellerpir.html
+++ b/
help/html/io/modellerpir.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/tcoffeescores.html
b/help/html/io/tcoffeescores.html
index
aa72b10
..
9a507c8
100644
(file)
--- a/
help/html/io/tcoffeescores.html
+++ b/
help/html/io/tcoffeescores.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/jalviewjnlp.html
b/help/html/jalviewjnlp.html
index
bddd331
..
191f6b1
100755
(executable)
--- a/
help/html/jalviewjnlp.html
+++ b/
help/html/jalviewjnlp.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/keys.html
b/help/html/keys.html
index
1c0ffc8
..
9bc7095
100755
(executable)
--- a/
help/html/keys.html
+++ b/
help/html/keys.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/memory.html
b/help/html/memory.html
index
b07c885
..
eec75d3
100755
(executable)
--- a/
help/html/memory.html
+++ b/
help/html/memory.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alignmentMenu.html
b/help/html/menus/alignmentMenu.html
index
f4ad784
..
d4ffc50
100755
(executable)
--- a/
help/html/menus/alignmentMenu.html
+++ b/
help/html/menus/alignmentMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotations.html
b/help/html/menus/alwannotations.html
index
4e1d844
..
3a1afc3
100755
(executable)
--- a/
help/html/menus/alwannotations.html
+++ b/
help/html/menus/alwannotations.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcalculate.html
b/help/html/menus/alwcalculate.html
index
f459c04
..
93652af
100755
(executable)
--- a/
help/html/menus/alwcalculate.html
+++ b/
help/html/menus/alwcalculate.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcolour.html
b/help/html/menus/alwcolour.html
index
92e78a0
..
3e93057
100755
(executable)
--- a/
help/html/menus/alwcolour.html
+++ b/
help/html/menus/alwcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwedit.html
b/help/html/menus/alwedit.html
index
5362838
..
e5ae321
100755
(executable)
--- a/
help/html/menus/alwedit.html
+++ b/
help/html/menus/alwedit.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwfile.html
b/help/html/menus/alwfile.html
index
9e6e40a
..
bc6c9b1
100755
(executable)
--- a/
help/html/menus/alwfile.html
+++ b/
help/html/menus/alwfile.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwformat.html
b/help/html/menus/alwformat.html
index
17cf8a0
..
0bdbe91
100644
(file)
--- a/
help/html/menus/alwformat.html
+++ b/
help/html/menus/alwformat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwselect.html
b/help/html/menus/alwselect.html
index
133f89f
..
9738e47
100644
(file)
--- a/
help/html/menus/alwselect.html
+++ b/
help/html/menus/alwselect.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwview.html
b/help/html/menus/alwview.html
index
7be8170
..
4248f9a
100755
(executable)
--- a/
help/html/menus/alwview.html
+++ b/
help/html/menus/alwview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/desktopMenu.html
b/help/html/menus/desktopMenu.html
index
b2a2f47
..
59b521a
100755
(executable)
--- a/
help/html/menus/desktopMenu.html
+++ b/
help/html/menus/desktopMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/index.html
b/help/html/menus/index.html
index
0fa72ce
..
ce4825d
100755
(executable)
--- a/
help/html/menus/index.html
+++ b/
help/html/menus/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/popupMenu.html
b/help/html/menus/popupMenu.html
index
71b2603
..
2be6000
100755
(executable)
--- a/
help/html/menus/popupMenu.html
+++ b/
help/html/menus/popupMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/wsmenu.html
b/help/html/menus/wsmenu.html
index
1997101
..
f3a4102
100755
(executable)
--- a/
help/html/menus/wsmenu.html
+++ b/
help/html/menus/wsmenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aaproperties.html
b/help/html/misc/aaproperties.html
index
f2b57ad
..
8ad4812
100755
(executable)
--- a/
help/html/misc/aaproperties.html
+++ b/
help/html/misc/aaproperties.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aminoAcids.html
b/help/html/misc/aminoAcids.html
index
bbf3b3a
..
14650eb
100755
(executable)
--- a/
help/html/misc/aminoAcids.html
+++ b/
help/html/misc/aminoAcids.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/geneticCode.html
b/help/html/misc/geneticCode.html
index
f047abf
..
1ca1026
100755
(executable)
--- a/
help/html/misc/geneticCode.html
+++ b/
help/html/misc/geneticCode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/na/index.html
b/help/html/na/index.html
index
6bac556
..
366e357
100644
(file)
--- a/
help/html/na/index.html
+++ b/
help/html/na/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/privacy.html
b/help/html/privacy.html
index
0d2f828
..
f86b6a6
100644
(file)
--- a/
help/html/privacy.html
+++ b/
help/html/privacy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/releases.html
b/help/html/releases.html
index
9ad0f70
..
c709a5f
100755
(executable)
--- a/
help/html/releases.html
+++ b/
help/html/releases.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/vamsas/index.html
b/help/html/vamsas/index.html
index
a177601
..
f2794b6
100644
(file)
--- a/
help/html/vamsas/index.html
+++ b/
help/html/vamsas/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/AACon.html
b/help/html/webServices/AACon.html
index
61f2f9f
..
8652e0f
100644
(file)
--- a/
help/html/webServices/AACon.html
+++ b/
help/html/webServices/AACon.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/JABAWS.html
b/help/html/webServices/JABAWS.html
index
ac93813
..
467f8d7
100644
(file)
--- a/
help/html/webServices/JABAWS.html
+++ b/
help/html/webServices/JABAWS.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/dbreffetcher.html
b/help/html/webServices/dbreffetcher.html
index
2dff2bc
..
90bd87d
100644
(file)
--- a/
help/html/webServices/dbreffetcher.html
+++ b/
help/html/webServices/dbreffetcher.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/index.html
b/help/html/webServices/index.html
index
c3d83fa
..
efbe3b1
100755
(executable)
--- a/
help/html/webServices/index.html
+++ b/
help/html/webServices/index.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/jnet.html
b/help/html/webServices/jnet.html
index
9b715c2
..
70c57ea
100755
(executable)
--- a/
help/html/webServices/jnet.html
+++ b/
help/html/webServices/jnet.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/msaclient.html
b/help/html/webServices/msaclient.html
index
b04e047
..
775eec8
100644
(file)
--- a/
help/html/webServices/msaclient.html
+++ b/
help/html/webServices/msaclient.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/newsreader.html
b/help/html/webServices/newsreader.html
index
498520a
..
953e121
100644
(file)
--- a/
help/html/webServices/newsreader.html
+++ b/
help/html/webServices/newsreader.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/proteinDisorder.html
b/help/html/webServices/proteinDisorder.html
index
77bdc01
..
a91de0e
100644
(file)
--- a/
help/html/webServices/proteinDisorder.html
+++ b/
help/html/webServices/proteinDisorder.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/shmr.html
b/help/html/webServices/shmr.html
index
d3f0bf3
..
ad12579
100755
(executable)
--- a/
help/html/webServices/shmr.html
+++ b/
help/html/webServices/shmr.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/urllinks.html
b/help/html/webServices/urllinks.html
index
75346d6
..
ef77c7e
100644
(file)
--- a/
help/html/webServices/urllinks.html
+++ b/
help/html/webServices/urllinks.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesParams.html
b/help/html/webServices/webServicesParams.html
index
ba1df32
..
690fb0f
100644
(file)
--- a/
help/html/webServices/webServicesParams.html
+++ b/
help/html/webServices/webServicesParams.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesPrefs.html
b/help/html/webServices/webServicesPrefs.html
index
4dff124
..
8ef6e5d
100644
(file)
--- a/
help/html/webServices/webServicesPrefs.html
+++ b/
help/html/webServices/webServicesPrefs.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/whatsNew.html
b/help/html/whatsNew.html
index
0934b05
..
7a786d5
100755
(executable)
--- a/
help/html/whatsNew.html
+++ b/
help/html/whatsNew.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/jalview-jalopy.xml
b/jalview-jalopy.xml
index
054ce99
..
e9c493c
100755
(executable)
--- a/
jalview-jalopy.xml
+++ b/
jalview-jalopy.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbbuild.xml
b/nbbuild.xml
index
d4b2979
..
95674ff
100644
(file)
--- a/
nbbuild.xml
+++ b/
nbbuild.xml
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbproject/project.xml
b/nbproject/project.xml
index
9511664
..
ac09730
100644
(file)
--- a/
nbproject/project.xml
+++ b/
nbproject/project.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/embl_mapping.xml
b/resources/embl_mapping.xml
index
92e483c
..
1b38efb
100644
(file)
--- a/
resources/embl_mapping.xml
+++ b/
resources/embl_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/uniprot_mapping.xml
b/resources/uniprot_mapping.xml
index
db6fa20
..
3392d54
100755
(executable)
--- a/
resources/uniprot_mapping.xml
+++ b/
resources/uniprot_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/JalviewWsParamSet.xsd
b/schemas/JalviewWsParamSet.xsd
index
23457d4
..
32696df
100644
(file)
--- a/
schemas/JalviewWsParamSet.xsd
+++ b/
schemas/JalviewWsParamSet.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/castor-mapping.xsd
b/schemas/castor-mapping.xsd
index
09fc99c
..
2f30f89
100644
(file)
--- a/
schemas/castor-mapping.xsd
+++ b/
schemas/castor-mapping.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/jalview.nodesc.properties
b/schemas/jalview.nodesc.properties
index
baa0ddc
..
8f0dd45
100644
(file)
--- a/
schemas/jalview.nodesc.properties
+++ b/
schemas/jalview.nodesc.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.properties
b/schemas/jalview.properties
index
c174b5e
..
2016960
100644
(file)
--- a/
schemas/jalview.properties
+++ b/
schemas/jalview.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.xsd
b/schemas/jalview.xsd
index
ab893bd
..
3fdf20c
100755
(executable)
--- a/
schemas/jalview.xsd
+++ b/
schemas/jalview.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/jalviewJvV1.xsd
b/schemas/jalviewJvV1.xsd
index
8685d9f
..
f222379
100644
(file)
--- a/
schemas/jalviewJvV1.xsd
+++ b/
schemas/jalviewJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsas.xsd
b/schemas/vamsas.xsd
index
dfee914
..
9f6ebea
100755
(executable)
--- a/
schemas/vamsas.xsd
+++ b/
schemas/vamsas.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsasJvV1.xsd
b/schemas/vamsasJvV1.xsd
index
4b12299
..
bd6b196
100644
(file)
--- a/
schemas/vamsasJvV1.xsd
+++ b/
schemas/vamsasJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBCanvas.java
b/src/MCview/AppletPDBCanvas.java
index
212f0f3
..
e5d8487
100644
(file)
--- a/
src/MCview/AppletPDBCanvas.java
+++ b/
src/MCview/AppletPDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBViewer.java
b/src/MCview/AppletPDBViewer.java
index
d550326
..
8a1c430
100644
(file)
--- a/
src/MCview/AppletPDBViewer.java
+++ b/
src/MCview/AppletPDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Atom.java
b/src/MCview/Atom.java
index
8b844d7
..
6140ed0
100755
(executable)
--- a/
src/MCview/Atom.java
+++ b/
src/MCview/Atom.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Bond.java
b/src/MCview/Bond.java
index
6517c7a
..
fdfb3d0
100755
(executable)
--- a/
src/MCview/Bond.java
+++ b/
src/MCview/Bond.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/MCMatrix.java
b/src/MCview/MCMatrix.java
index
0bef874
..
d409312
100755
(executable)
--- a/
src/MCview/MCMatrix.java
+++ b/
src/MCview/MCMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBCanvas.java
b/src/MCview/PDBCanvas.java
index
11caf98
..
8c16aad
100644
(file)
--- a/
src/MCview/PDBCanvas.java
+++ b/
src/MCview/PDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
8338c63
..
823e02c
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBViewer.java
b/src/MCview/PDBViewer.java
index
fc52c08
..
dc53855
100755
(executable)
--- a/
src/MCview/PDBViewer.java
+++ b/
src/MCview/PDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
caa2501
..
aab4081
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Residue.java
b/src/MCview/Residue.java
index
3a8c979
..
2efbefe
100755
(executable)
--- a/
src/MCview/Residue.java
+++ b/
src/MCview/Residue.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Zsort.java
b/src/MCview/Zsort.java
index
0e7a271
..
72e28b9
100755
(executable)
--- a/
src/MCview/Zsort.java
+++ b/
src/MCview/Zsort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/castor.properties
b/src/castor.properties
index
673fe47
..
f1176f8
100644
(file)
--- a/
src/castor.properties
+++ b/
src/castor.properties
@@
-1,5
+1,5
@@
###############################################################################
###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistry.java
b/src/ext/vamsas/IRegistry.java
index
7290a1a
..
23ed3f4
100755
(executable)
--- a/
src/ext/vamsas/IRegistry.java
+++ b/
src/ext/vamsas/IRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryService.java
b/src/ext/vamsas/IRegistryService.java
index
13210ad
..
b0ffe9e
100755
(executable)
--- a/
src/ext/vamsas/IRegistryService.java
+++ b/
src/ext/vamsas/IRegistryService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryServiceLocator.java
b/src/ext/vamsas/IRegistryServiceLocator.java
index
3ced73d
..
d411513
100755
(executable)
--- a/
src/ext/vamsas/IRegistryServiceLocator.java
+++ b/
src/ext/vamsas/IRegistryServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/Jpred.java
b/src/ext/vamsas/Jpred.java
index
561789e
..
59dadcc
100755
(executable)
--- a/
src/ext/vamsas/Jpred.java
+++ b/
src/ext/vamsas/Jpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredService.java
b/src/ext/vamsas/JpredService.java
index
b0f14c3
..
cc7a008
100755
(executable)
--- a/
src/ext/vamsas/JpredService.java
+++ b/
src/ext/vamsas/JpredService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredServiceLocator.java
b/src/ext/vamsas/JpredServiceLocator.java
index
8b7161b
..
7a23737
100755
(executable)
--- a/
src/ext/vamsas/JpredServiceLocator.java
+++ b/
src/ext/vamsas/JpredServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredSoapBindingStub.java
b/src/ext/vamsas/JpredSoapBindingStub.java
index
7d407ad
..
b35eabe
100755
(executable)
--- a/
src/ext/vamsas/JpredSoapBindingStub.java
+++ b/
src/ext/vamsas/JpredSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWS.java
b/src/ext/vamsas/MuscleWS.java
index
eb55004
..
ef9f1f7
100755
(executable)
--- a/
src/ext/vamsas/MuscleWS.java
+++ b/
src/ext/vamsas/MuscleWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSService.java
b/src/ext/vamsas/MuscleWSService.java
index
18701bd
..
31bfd22
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSService.java
+++ b/
src/ext/vamsas/MuscleWSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSServiceLocator.java
b/src/ext/vamsas/MuscleWSServiceLocator.java
index
9cec16e
..
a79dd27
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/
src/ext/vamsas/MuscleWSServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSSoapBindingStub.java
b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index
8b55ad1
..
7054d6f
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/
src/ext/vamsas/MuscleWSSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
index
e6020e8
..
b3fdb09
100755
(executable)
--- a/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchI.java
b/src/ext/vamsas/SeqSearchI.java
index
fd7f477
..
63b3fec
100644
(file)
--- a/
src/ext/vamsas/SeqSearchI.java
+++ b/
src/ext/vamsas/SeqSearchI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceLocator.java
b/src/ext/vamsas/SeqSearchServiceLocator.java
index
e9e2560
..
a5708fe
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/
src/ext/vamsas/SeqSearchServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceService.java
b/src/ext/vamsas/SeqSearchServiceService.java
index
37bd8e0
..
e8d145d
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceService.java
+++ b/
src/ext/vamsas/SeqSearchServiceService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index
9e51321
..
fba1287
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandle.java
b/src/ext/vamsas/ServiceHandle.java
index
4fa31ca
..
bb27197
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandle.java
+++ b/
src/ext/vamsas/ServiceHandle.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandles.java
b/src/ext/vamsas/ServiceHandles.java
index
0edb9f9
..
250f8bc
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandles.java
+++ b/
src/ext/vamsas/ServiceHandles.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AAFrequency.java
b/src/jalview/analysis/AAFrequency.java
index
75a777f
..
d028ade
100755
(executable)
--- a/
src/jalview/analysis/AAFrequency.java
+++ b/
src/jalview/analysis/AAFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
573c545
..
5b37934
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
b5a0be8
..
cdb7dbe
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
8641629
..
f0dc860
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CrossRef.java
b/src/jalview/analysis/CrossRef.java
index
17658b3
..
8d52caf
100644
(file)
--- a/
src/jalview/analysis/CrossRef.java
+++ b/
src/jalview/analysis/CrossRef.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
e74d4b5
..
3b41a8e
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Finder.java
b/src/jalview/analysis/Finder.java
index
06d75ac
..
0494896
100644
(file)
--- a/
src/jalview/analysis/Finder.java
+++ b/
src/jalview/analysis/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Grouping.java
b/src/jalview/analysis/Grouping.java
index
bca85df
..
29b9323
100644
(file)
--- a/
src/jalview/analysis/Grouping.java
+++ b/
src/jalview/analysis/Grouping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/NJTree.java
b/src/jalview/analysis/NJTree.java
index
41d599e
..
4a5f762
100644
(file)
--- a/
src/jalview/analysis/NJTree.java
+++ b/
src/jalview/analysis/NJTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/PCA.java
b/src/jalview/analysis/PCA.java
index
979968f
..
733e7f9
100755
(executable)
--- a/
src/jalview/analysis/PCA.java
+++ b/
src/jalview/analysis/PCA.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/ParseProperties.java
b/src/jalview/analysis/ParseProperties.java
index
ccae429
..
b55542f
100644
(file)
--- a/
src/jalview/analysis/ParseProperties.java
+++ b/
src/jalview/analysis/ParseProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Rna.java
b/src/jalview/analysis/Rna.java
index
be7105a
..
835ead3
100644
(file)
--- a/
src/jalview/analysis/Rna.java
+++ b/
src/jalview/analysis/Rna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
e46848b
..
4fc54b8
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SequenceIdMatcher.java
b/src/jalview/analysis/SequenceIdMatcher.java
index
cc2b458
..
a502523
100755
(executable)
--- a/
src/jalview/analysis/SequenceIdMatcher.java
+++ b/
src/jalview/analysis/SequenceIdMatcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/StructureFrequency.java
b/src/jalview/analysis/StructureFrequency.java
index
6409413
..
f56a70b
100644
(file)
--- a/
src/jalview/analysis/StructureFrequency.java
+++ b/
src/jalview/analysis/StructureFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/WUSSParseException.java
b/src/jalview/analysis/WUSSParseException.java
index
cbe0f0e
..
b7bf231
100644
(file)
--- a/
src/jalview/analysis/WUSSParseException.java
+++ b/
src/jalview/analysis/WUSSParseException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcManagerI.java
b/src/jalview/api/AlignCalcManagerI.java
index
c2e7b14
..
2641c96
100644
(file)
--- a/
src/jalview/api/AlignCalcManagerI.java
+++ b/
src/jalview/api/AlignCalcManagerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcWorkerI.java
b/src/jalview/api/AlignCalcWorkerI.java
index
2227b10
..
c8dc96d
100644
(file)
--- a/
src/jalview/api/AlignCalcWorkerI.java
+++ b/
src/jalview/api/AlignCalcWorkerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewportI.java
b/src/jalview/api/AlignViewportI.java
index
44fef0e
..
7463187
100644
(file)
--- a/
src/jalview/api/AlignViewportI.java
+++ b/
src/jalview/api/AlignViewportI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignmentViewPanel.java
b/src/jalview/api/AlignmentViewPanel.java
index
1705995
..
e3d8d66
100644
(file)
--- a/
src/jalview/api/AlignmentViewPanel.java
+++ b/
src/jalview/api/AlignmentViewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureRenderer.java
b/src/jalview/api/FeatureRenderer.java
index
ea7f55a
..
d46d684
100644
(file)
--- a/
src/jalview/api/FeatureRenderer.java
+++ b/
src/jalview/api/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/OOMHandlerI.java
b/src/jalview/api/OOMHandlerI.java
index
6effadf
..
0c4dda8
100644
(file)
--- a/
src/jalview/api/OOMHandlerI.java
+++ b/
src/jalview/api/OOMHandlerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/RotatableCanvasI.java
b/src/jalview/api/RotatableCanvasI.java
index
32a1b8a
..
f00ffa4
100644
(file)
--- a/
src/jalview/api/RotatableCanvasI.java
+++ b/
src/jalview/api/RotatableCanvasI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceRenderer.java
b/src/jalview/api/SequenceRenderer.java
index
4118844
..
7f47848
100644
(file)
--- a/
src/jalview/api/SequenceRenderer.java
+++ b/
src/jalview/api/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceStructureBinding.java
b/src/jalview/api/SequenceStructureBinding.java
index
829da37
..
99be87a
100644
(file)
--- a/
src/jalview/api/SequenceStructureBinding.java
+++ b/
src/jalview/api/SequenceStructureBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/StructureSelectionManagerProvider.java
b/src/jalview/api/StructureSelectionManagerProvider.java
index
d08ae7c
..
c287142
100644
(file)
--- a/
src/jalview/api/StructureSelectionManagerProvider.java
+++ b/
src/jalview/api/StructureSelectionManagerProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
13dcd05
..
a955176
100644
(file)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignFrame.java
b/src/jalview/appletgui/AlignFrame.java
index
40999c6
..
3c5c956
100644
(file)
--- a/
src/jalview/appletgui/AlignFrame.java
+++ b/
src/jalview/appletgui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
2ced8da
..
42aae94
100644
(file)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
5a49281
..
7f2a943
100644
(file)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationColourChooser.java
b/src/jalview/appletgui/AnnotationColourChooser.java
index
db928b7
..
99ddc50
100644
(file)
--- a/
src/jalview/appletgui/AnnotationColourChooser.java
+++ b/
src/jalview/appletgui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationLabels.java
b/src/jalview/appletgui/AnnotationLabels.java
index
858c055
..
7d4c38c
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationLabels.java
+++ b/
src/jalview/appletgui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationPanel.java
b/src/jalview/appletgui/AnnotationPanel.java
index
250d222
..
2704306
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationPanel.java
+++ b/
src/jalview/appletgui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
3f2a769
..
b88bb94
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmolBinding.java
b/src/jalview/appletgui/AppletJmolBinding.java
index
edf2d45
..
923f3b2
100644
(file)
--- a/
src/jalview/appletgui/AppletJmolBinding.java
+++ b/
src/jalview/appletgui/AppletJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/CutAndPasteTransfer.java
b/src/jalview/appletgui/CutAndPasteTransfer.java
index
756fa81
..
ff05547
100644
(file)
--- a/
src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/
src/jalview/appletgui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EditNameDialog.java
b/src/jalview/appletgui/EditNameDialog.java
index
4eb3aa3
..
44aa229
100644
(file)
--- a/
src/jalview/appletgui/EditNameDialog.java
+++ b/
src/jalview/appletgui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EmbmenuFrame.java
b/src/jalview/appletgui/EmbmenuFrame.java
index
0f20ad6
..
3756812
100644
(file)
--- a/
src/jalview/appletgui/EmbmenuFrame.java
+++ b/
src/jalview/appletgui/EmbmenuFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ExtJmol.java
b/src/jalview/appletgui/ExtJmol.java
index
a4ae58c
..
ae6b5ab
100644
(file)
--- a/
src/jalview/appletgui/ExtJmol.java
+++ b/
src/jalview/appletgui/ExtJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureColourChooser.java
b/src/jalview/appletgui/FeatureColourChooser.java
index
4968688
..
66929d4
100644
(file)
--- a/
src/jalview/appletgui/FeatureColourChooser.java
+++ b/
src/jalview/appletgui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureRenderer.java
b/src/jalview/appletgui/FeatureRenderer.java
index
0a40439
..
0478a76
100644
(file)
--- a/
src/jalview/appletgui/FeatureRenderer.java
+++ b/
src/jalview/appletgui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureSettings.java
b/src/jalview/appletgui/FeatureSettings.java
index
df2ec15
..
004125d
100755
(executable)
--- a/
src/jalview/appletgui/FeatureSettings.java
+++ b/
src/jalview/appletgui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Finder.java
b/src/jalview/appletgui/Finder.java
index
ad99983
..
b27dfc5
100644
(file)
--- a/
src/jalview/appletgui/Finder.java
+++ b/
src/jalview/appletgui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FontChooser.java
b/src/jalview/appletgui/FontChooser.java
index
d3351e7
..
a9fee20
100644
(file)
--- a/
src/jalview/appletgui/FontChooser.java
+++ b/
src/jalview/appletgui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdCanvas.java
b/src/jalview/appletgui/IdCanvas.java
index
140f5f9
..
aa3a578
100755
(executable)
--- a/
src/jalview/appletgui/IdCanvas.java
+++ b/
src/jalview/appletgui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdPanel.java
b/src/jalview/appletgui/IdPanel.java
index
d73668b
..
e427f42
100755
(executable)
--- a/
src/jalview/appletgui/IdPanel.java
+++ b/
src/jalview/appletgui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdwidthAdjuster.java
b/src/jalview/appletgui/IdwidthAdjuster.java
index
095a592
..
dc3fdba
100755
(executable)
--- a/
src/jalview/appletgui/IdwidthAdjuster.java
+++ b/
src/jalview/appletgui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/JVDialog.java
b/src/jalview/appletgui/JVDialog.java
index
3443cad
..
60df71d
100644
(file)
--- a/
src/jalview/appletgui/JVDialog.java
+++ b/
src/jalview/appletgui/JVDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/OverviewPanel.java
b/src/jalview/appletgui/OverviewPanel.java
index
4d2aeed
..
954f777
100755
(executable)
--- a/
src/jalview/appletgui/OverviewPanel.java
+++ b/
src/jalview/appletgui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PCAPanel.java
b/src/jalview/appletgui/PCAPanel.java
index
78f950b
..
f592404
100644
(file)
--- a/
src/jalview/appletgui/PCAPanel.java
+++ b/
src/jalview/appletgui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PaintRefresher.java
b/src/jalview/appletgui/PaintRefresher.java
index
506ace4
..
e2f9756
100755
(executable)
--- a/
src/jalview/appletgui/PaintRefresher.java
+++ b/
src/jalview/appletgui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PairwiseAlignPanel.java
b/src/jalview/appletgui/PairwiseAlignPanel.java
index
2df0eac
..
589a664
100644
(file)
--- a/
src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/
src/jalview/appletgui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RedundancyPanel.java
b/src/jalview/appletgui/RedundancyPanel.java
index
b5f507f
..
3d7c80f
100644
(file)
--- a/
src/jalview/appletgui/RedundancyPanel.java
+++ b/
src/jalview/appletgui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RotatableCanvas.java
b/src/jalview/appletgui/RotatableCanvas.java
index
1c38c56
..
9ab487b
100755
(executable)
--- a/
src/jalview/appletgui/RotatableCanvas.java
+++ b/
src/jalview/appletgui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ScalePanel.java
b/src/jalview/appletgui/ScalePanel.java
index
41e9acd
..
58f4d69
100755
(executable)
--- a/
src/jalview/appletgui/ScalePanel.java
+++ b/
src/jalview/appletgui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
58e6caa
..
34ef556
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqPanel.java
b/src/jalview/appletgui/SeqPanel.java
index
429183d
..
9e2c86f
100644
(file)
--- a/
src/jalview/appletgui/SeqPanel.java
+++ b/
src/jalview/appletgui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SequenceRenderer.java
b/src/jalview/appletgui/SequenceRenderer.java
index
154bea4
..
aec564b
100755
(executable)
--- a/
src/jalview/appletgui/SequenceRenderer.java
+++ b/
src/jalview/appletgui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SliderPanel.java
b/src/jalview/appletgui/SliderPanel.java
index
1bd5fd8
..
fc33c42
100644
(file)
--- a/
src/jalview/appletgui/SliderPanel.java
+++ b/
src/jalview/appletgui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Tooltip.java
b/src/jalview/appletgui/Tooltip.java
index
9cda080
..
37066a5
100755
(executable)
--- a/
src/jalview/appletgui/Tooltip.java
+++ b/
src/jalview/appletgui/Tooltip.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
fc1e464
..
a2626e7
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreePanel.java
b/src/jalview/appletgui/TreePanel.java
index
62fa99d
..
ee070a9
100644
(file)
--- a/
src/jalview/appletgui/TreePanel.java
+++ b/
src/jalview/appletgui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
225cfc7
..
1cf12f5
100644
(file)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Cache.java
b/src/jalview/bin/Cache.java
index
b07593d
..
a395093
100755
(executable)
--- a/
src/jalview/bin/Cache.java
+++ b/
src/jalview/bin/Cache.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Jalview.java
b/src/jalview/bin/Jalview.java
index
5dc6c81
..
859b6f5
100755
(executable)
--- a/
src/jalview/bin/Jalview.java
+++ b/
src/jalview/bin/Jalview.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLite.java
b/src/jalview/bin/JalviewLite.java
index
68a85f3
..
ad09824
100644
(file)
--- a/
src/jalview/bin/JalviewLite.java
+++ b/
src/jalview/bin/JalviewLite.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLiteURLRetrieve.java
b/src/jalview/bin/JalviewLiteURLRetrieve.java
index
2eb1d91
..
67f3b67
100644
(file)
--- a/
src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/
src/jalview/bin/JalviewLiteURLRetrieve.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Alignment.java
b/src/jalview/binding/Alignment.java
index
b32ca97
..
fb696e7
100644
(file)
--- a/
src/jalview/binding/Alignment.java
+++ b/
src/jalview/binding/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Annotation.java
b/src/jalview/binding/Annotation.java
index
1c6480f
..
ef2071d
100644
(file)
--- a/
src/jalview/binding/Annotation.java
+++ b/
src/jalview/binding/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/AnnotationElement.java
b/src/jalview/binding/AnnotationElement.java
index
9272234
..
cdd0c11
100644
(file)
--- a/
src/jalview/binding/AnnotationElement.java
+++ b/
src/jalview/binding/AnnotationElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Colour.java
b/src/jalview/binding/Colour.java
index
7802c35
..
e0d75e6
100644
(file)
--- a/
src/jalview/binding/Colour.java
+++ b/
src/jalview/binding/Colour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Feature.java
b/src/jalview/binding/Feature.java
index
1a12502
..
28109e6
100644
(file)
--- a/
src/jalview/binding/Feature.java
+++ b/
src/jalview/binding/Feature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/FeatureSettings.java
b/src/jalview/binding/FeatureSettings.java
index
5628281
..
7f2d750
100644
(file)
--- a/
src/jalview/binding/FeatureSettings.java
+++ b/
src/jalview/binding/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Features.java
b/src/jalview/binding/Features.java
index
ec22915
..
f8c1f18
100644
(file)
--- a/
src/jalview/binding/Features.java
+++ b/
src/jalview/binding/Features.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JGroup.java
b/src/jalview/binding/JGroup.java
index
5b7cbf3
..
080b146
100644
(file)
--- a/
src/jalview/binding/JGroup.java
+++ b/
src/jalview/binding/JGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JSeq.java
b/src/jalview/binding/JSeq.java
index
ba4ae36
..
9b3dfc2
100644
(file)
--- a/
src/jalview/binding/JSeq.java
+++ b/
src/jalview/binding/JSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModel.java
b/src/jalview/binding/JalviewModel.java
index
9dbc5a5
..
21e8b36
100644
(file)
--- a/
src/jalview/binding/JalviewModel.java
+++ b/
src/jalview/binding/JalviewModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModelSequence.java
b/src/jalview/binding/JalviewModelSequence.java
index
66b424f
..
f8940d3
100644
(file)
--- a/
src/jalview/binding/JalviewModelSequence.java
+++ b/
src/jalview/binding/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewUserColours.java
b/src/jalview/binding/JalviewUserColours.java
index
deb5bc7
..
d25dd59
100644
(file)
--- a/
src/jalview/binding/JalviewUserColours.java
+++ b/
src/jalview/binding/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbentry.java
b/src/jalview/binding/Pdbentry.java
index
3aa6ad6
..
6464563
100644
(file)
--- a/
src/jalview/binding/Pdbentry.java
+++ b/
src/jalview/binding/Pdbentry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/PdbentryItem.java
b/src/jalview/binding/PdbentryItem.java
index
6fe9924
..
41edda3
100644
(file)
--- a/
src/jalview/binding/PdbentryItem.java
+++ b/
src/jalview/binding/PdbentryItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbids.java
b/src/jalview/binding/Pdbids.java
index
08d53f3
..
d848fa3
100644
(file)
--- a/
src/jalview/binding/Pdbids.java
+++ b/
src/jalview/binding/Pdbids.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Property.java
b/src/jalview/binding/Property.java
index
6a0fbee
..
3a02d27
100644
(file)
--- a/
src/jalview/binding/Property.java
+++ b/
src/jalview/binding/Property.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Sequence.java
b/src/jalview/binding/Sequence.java
index
7f63ef5
..
a7aaf4b
100644
(file)
--- a/
src/jalview/binding/Sequence.java
+++ b/
src/jalview/binding/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceSet.java
b/src/jalview/binding/SequenceSet.java
index
cd4601a
..
611d49d
100644
(file)
--- a/
src/jalview/binding/SequenceSet.java
+++ b/
src/jalview/binding/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceType.java
b/src/jalview/binding/SequenceType.java
index
816b166
..
c653e30
100644
(file)
--- a/
src/jalview/binding/SequenceType.java
+++ b/
src/jalview/binding/SequenceType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Setting.java
b/src/jalview/binding/Setting.java
index
691dfde
..
c01fc35
100644
(file)
--- a/
src/jalview/binding/Setting.java
+++ b/
src/jalview/binding/Setting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Tree.java
b/src/jalview/binding/Tree.java
index
7af1853
..
a1cbf24
100644
(file)
--- a/
src/jalview/binding/Tree.java
+++ b/
src/jalview/binding/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColourScheme.java
b/src/jalview/binding/UserColourScheme.java
index
b7430e5
..
be41f1a
100644
(file)
--- a/
src/jalview/binding/UserColourScheme.java
+++ b/
src/jalview/binding/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColours.java
b/src/jalview/binding/UserColours.java
index
77b1205
..
411c6be
100644
(file)
--- a/
src/jalview/binding/UserColours.java
+++ b/
src/jalview/binding/UserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VAMSAS.java
b/src/jalview/binding/VAMSAS.java
index
1362e34
..
ca813a1
100644
(file)
--- a/
src/jalview/binding/VAMSAS.java
+++ b/
src/jalview/binding/VAMSAS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VamsasModel.java
b/src/jalview/binding/VamsasModel.java
index
288b71f
..
18ad533
100644
(file)
--- a/
src/jalview/binding/VamsasModel.java
+++ b/
src/jalview/binding/VamsasModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Viewport.java
b/src/jalview/binding/Viewport.java
index
b9367da
..
9a78ced
100644
(file)
--- a/
src/jalview/binding/Viewport.java
+++ b/
src/jalview/binding/Viewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/ChangeCaseCommand.java
b/src/jalview/commands/ChangeCaseCommand.java
index
c026f37
..
138628a
100644
(file)
--- a/
src/jalview/commands/ChangeCaseCommand.java
+++ b/
src/jalview/commands/ChangeCaseCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/CommandI.java
b/src/jalview/commands/CommandI.java
index
d07e285
..
d35f290
100644
(file)
--- a/
src/jalview/commands/CommandI.java
+++ b/
src/jalview/commands/CommandI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/EditCommand.java
b/src/jalview/commands/EditCommand.java
index
ed9e551
..
ba66e82
100644
(file)
--- a/
src/jalview/commands/EditCommand.java
+++ b/
src/jalview/commands/EditCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/OrderCommand.java
b/src/jalview/commands/OrderCommand.java
index
274e9e9
..
316d6ee
100644
(file)
--- a/
src/jalview/commands/OrderCommand.java
+++ b/
src/jalview/commands/OrderCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapColCommand.java
b/src/jalview/commands/RemoveGapColCommand.java
index
80a0dd5
..
d67df61
100644
(file)
--- a/
src/jalview/commands/RemoveGapColCommand.java
+++ b/
src/jalview/commands/RemoveGapColCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapsCommand.java
b/src/jalview/commands/RemoveGapsCommand.java
index
8754b51
..
c97d43a
100644
(file)
--- a/
src/jalview/commands/RemoveGapsCommand.java
+++ b/
src/jalview/commands/RemoveGapsCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/SlideSequencesCommand.java
b/src/jalview/commands/SlideSequencesCommand.java
index
a6b1480
..
5bdecc8
100644
(file)
--- a/
src/jalview/commands/SlideSequencesCommand.java
+++ b/
src/jalview/commands/SlideSequencesCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/TrimRegionCommand.java
b/src/jalview/commands/TrimRegionCommand.java
index
e33e679
..
f98da94
100644
(file)
--- a/
src/jalview/commands/TrimRegionCommand.java
+++ b/
src/jalview/commands/TrimRegionCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignedCodonFrame.java
b/src/jalview/datamodel/AlignedCodonFrame.java
index
9cfc4ba
..
d974eb2
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodonFrame.java
+++ b/
src/jalview/datamodel/AlignedCodonFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
35efe4f
..
5d97fe3
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
8f5b63d
..
5145a4f
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentI.java
b/src/jalview/datamodel/AlignmentI.java
index
2190fa8
..
975f9fa
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentI.java
+++ b/
src/jalview/datamodel/AlignmentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentOrder.java
b/src/jalview/datamodel/AlignmentOrder.java
index
e95ec39
..
a230717
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentOrder.java
+++ b/
src/jalview/datamodel/AlignmentOrder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentView.java
b/src/jalview/datamodel/AlignmentView.java
index
273a685
..
c5019d1
100644
(file)
--- a/
src/jalview/datamodel/AlignmentView.java
+++ b/
src/jalview/datamodel/AlignmentView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AnnotatedCollectionI.java
b/src/jalview/datamodel/AnnotatedCollectionI.java
index
0f856ee
..
7baf5f5
100644
(file)
--- a/
src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/
src/jalview/datamodel/AnnotatedCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Annotation.java
b/src/jalview/datamodel/Annotation.java
index
1c88c82
..
93b6ff6
100755
(executable)
--- a/
src/jalview/datamodel/Annotation.java
+++ b/
src/jalview/datamodel/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinaryNode.java
b/src/jalview/datamodel/BinaryNode.java
index
177ebe7
..
47cd108
100755
(executable)
--- a/
src/jalview/datamodel/BinaryNode.java
+++ b/
src/jalview/datamodel/BinaryNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinarySequence.java
b/src/jalview/datamodel/BinarySequence.java
index
456b8b0
..
041ed44
100755
(executable)
--- a/
src/jalview/datamodel/BinarySequence.java
+++ b/
src/jalview/datamodel/BinarySequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarArray.java
b/src/jalview/datamodel/CigarArray.java
index
a45efcd
..
8315166
100644
(file)
--- a/
src/jalview/datamodel/CigarArray.java
+++ b/
src/jalview/datamodel/CigarArray.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarBase.java
b/src/jalview/datamodel/CigarBase.java
index
15c600d
..
38ebdb1
100644
(file)
--- a/
src/jalview/datamodel/CigarBase.java
+++ b/
src/jalview/datamodel/CigarBase.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarCigar.java
b/src/jalview/datamodel/CigarCigar.java
index
7957d33
..
1a79b17
100644
(file)
--- a/
src/jalview/datamodel/CigarCigar.java
+++ b/
src/jalview/datamodel/CigarCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarSimple.java
b/src/jalview/datamodel/CigarSimple.java
index
e68ed6f
..
0b422d8
100644
(file)
--- a/
src/jalview/datamodel/CigarSimple.java
+++ b/
src/jalview/datamodel/CigarSimple.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ColumnSelection.java
b/src/jalview/datamodel/ColumnSelection.java
index
b87cd2b
..
5518588
100644
(file)
--- a/
src/jalview/datamodel/ColumnSelection.java
+++ b/
src/jalview/datamodel/ColumnSelection.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefEntry.java
b/src/jalview/datamodel/DBRefEntry.java
index
6dc6641
..
0039dd5
100755
(executable)
--- a/
src/jalview/datamodel/DBRefEntry.java
+++ b/
src/jalview/datamodel/DBRefEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
d13f9c8
..
ceb11bf
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/FeatureProperties.java
b/src/jalview/datamodel/FeatureProperties.java
index
dbe4ab4
..
fbf0740
100644
(file)
--- a/
src/jalview/datamodel/FeatureProperties.java
+++ b/
src/jalview/datamodel/FeatureProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/GraphLine.java
b/src/jalview/datamodel/GraphLine.java
index
be475f4
..
ed4bd8d
100755
(executable)
--- a/
src/jalview/datamodel/GraphLine.java
+++ b/
src/jalview/datamodel/GraphLine.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
d24f794
..
9f08b7e
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Mapping.java
b/src/jalview/datamodel/Mapping.java
index
c9c9170
..
2e374c6
100644
(file)
--- a/
src/jalview/datamodel/Mapping.java
+++ b/
src/jalview/datamodel/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/NodeTransformI.java
b/src/jalview/datamodel/NodeTransformI.java
index
72742c7
..
b5fc803
100644
(file)
--- a/
src/jalview/datamodel/NodeTransformI.java
+++ b/
src/jalview/datamodel/NodeTransformI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/PDBEntry.java
b/src/jalview/datamodel/PDBEntry.java
index
7f6e77a
..
c41ea2e
100755
(executable)
--- a/
src/jalview/datamodel/PDBEntry.java
+++ b/
src/jalview/datamodel/PDBEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Provenance.java
b/src/jalview/datamodel/Provenance.java
index
1da74a0
..
5988fb7
100755
(executable)
--- a/
src/jalview/datamodel/Provenance.java
+++ b/
src/jalview/datamodel/Provenance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ProvenanceEntry.java
b/src/jalview/datamodel/ProvenanceEntry.java
index
51de184
..
b943285
100755
(executable)
--- a/
src/jalview/datamodel/ProvenanceEntry.java
+++ b/
src/jalview/datamodel/ProvenanceEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SearchResults.java
b/src/jalview/datamodel/SearchResults.java
index
bd1a375
..
dd021cf
100755
(executable)
--- a/
src/jalview/datamodel/SearchResults.java
+++ b/
src/jalview/datamodel/SearchResults.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SeqCigar.java
b/src/jalview/datamodel/SeqCigar.java
index
c81cc5e
..
0ceefd5
100644
(file)
--- a/
src/jalview/datamodel/SeqCigar.java
+++ b/
src/jalview/datamodel/SeqCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
cd817ab
..
910c86d
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceCollectionI.java
b/src/jalview/datamodel/SequenceCollectionI.java
index
11e8c67
..
73cf03f
100644
(file)
--- a/
src/jalview/datamodel/SequenceCollectionI.java
+++ b/
src/jalview/datamodel/SequenceCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceFeature.java
b/src/jalview/datamodel/SequenceFeature.java
index
66e59f1
..
24afbd3
100755
(executable)
--- a/
src/jalview/datamodel/SequenceFeature.java
+++ b/
src/jalview/datamodel/SequenceFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
a8b0ace
..
a01c0a5
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
285b7a8
..
8fc02cd
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceNode.java
b/src/jalview/datamodel/SequenceNode.java
index
81f5e9b
..
d6770c0
100755
(executable)
--- a/
src/jalview/datamodel/SequenceNode.java
+++ b/
src/jalview/datamodel/SequenceNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequencePoint.java
b/src/jalview/datamodel/SequencePoint.java
index
3690b43
..
d38da0f
100755
(executable)
--- a/
src/jalview/datamodel/SequencePoint.java
+++ b/
src/jalview/datamodel/SequencePoint.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotEntry.java
b/src/jalview/datamodel/UniprotEntry.java
index
5693555
..
f21591a
100755
(executable)
--- a/
src/jalview/datamodel/UniprotEntry.java
+++ b/
src/jalview/datamodel/UniprotEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotFile.java
b/src/jalview/datamodel/UniprotFile.java
index
2739e28
..
f68ffc6
100755
(executable)
--- a/
src/jalview/datamodel/UniprotFile.java
+++ b/
src/jalview/datamodel/UniprotFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotProteinName.java
b/src/jalview/datamodel/UniprotProteinName.java
index
4a96b0c
..
cb21789
100755
(executable)
--- a/
src/jalview/datamodel/UniprotProteinName.java
+++ b/
src/jalview/datamodel/UniprotProteinName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotSequence.java
b/src/jalview/datamodel/UniprotSequence.java
index
0480ec2
..
a5112c6
100755
(executable)
--- a/
src/jalview/datamodel/UniprotSequence.java
+++ b/
src/jalview/datamodel/UniprotSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/BasePosition.java
b/src/jalview/datamodel/xdb/embl/BasePosition.java
index
b3968c3
..
53d4341
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/
src/jalview/datamodel/xdb/embl/BasePosition.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
9661d12
..
0445046
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblError.java
b/src/jalview/datamodel/xdb/embl/EmblError.java
index
5d8daa4
..
c7a59d8
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblError.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeature.java
b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index
1aed0a1
..
c920f7b
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
index
63f0ac4
..
c5aad07
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
index
daef573
..
fd4de3c
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFile.java
b/src/jalview/datamodel/xdb/embl/EmblFile.java
index
78c4f5c
..
7e39a51
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblSequence.java
b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index
42ca6a4
..
a997066
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/Qualifier.java
b/src/jalview/datamodel/xdb/embl/Qualifier.java
index
9d0dbe0
..
c60c52a
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/
src/jalview/datamodel/xdb/embl/Qualifier.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
46c94c4
..
8ee2296
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JmolCommands.java
b/src/jalview/ext/jmol/JmolCommands.java
index
8494b4b
..
17a622d
100644
(file)
--- a/
src/jalview/ext/jmol/JmolCommands.java
+++ b/
src/jalview/ext/jmol/JmolCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/JalviewVarnaBinding.java
b/src/jalview/ext/varna/JalviewVarnaBinding.java
index
411e4fe
..
c0b6bec
100644
(file)
--- a/
src/jalview/ext/varna/JalviewVarnaBinding.java
+++ b/
src/jalview/ext/varna/JalviewVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/VarnaCommands.java
b/src/jalview/ext/varna/VarnaCommands.java
index
8ed7462
..
94899ca
100644
(file)
--- a/
src/jalview/ext/varna/VarnaCommands.java
+++ b/
src/jalview/ext/varna/VarnaCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
d475c91
..
d992233
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
e9829bb
..
de8f310
100644
(file)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignmentPanel.java
b/src/jalview/gui/AlignmentPanel.java
index
6bfe4bd
..
cad4339
100644
(file)
--- a/
src/jalview/gui/AlignmentPanel.java
+++ b/
src/jalview/gui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationColourChooser.java
b/src/jalview/gui/AnnotationColourChooser.java
index
da7a176
..
60a0759
100644
(file)
--- a/
src/jalview/gui/AnnotationColourChooser.java
+++ b/
src/jalview/gui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationExporter.java
b/src/jalview/gui/AnnotationExporter.java
index
56c6e2d
..
a199c95
100644
(file)
--- a/
src/jalview/gui/AnnotationExporter.java
+++ b/
src/jalview/gui/AnnotationExporter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
ae7596d
..
2178e37
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationPanel.java
b/src/jalview/gui/AnnotationPanel.java
index
3e9b38e
..
128110b
100755
(executable)
--- a/
src/jalview/gui/AnnotationPanel.java
+++ b/
src/jalview/gui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
81b88ac
..
bf32dff
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmolBinding.java
b/src/jalview/gui/AppJmolBinding.java
index
80a7b9e
..
2424f90
100644
(file)
--- a/
src/jalview/gui/AppJmolBinding.java
+++ b/
src/jalview/gui/AppJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarna.java
b/src/jalview/gui/AppVarna.java
index
1de0cf2
..
f047199
100644
(file)
--- a/
src/jalview/gui/AppVarna.java
+++ b/
src/jalview/gui/AppVarna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarnaBinding.java
b/src/jalview/gui/AppVarnaBinding.java
index
b287b8e
..
d191212
100644
(file)
--- a/
src/jalview/gui/AppVarnaBinding.java
+++ b/
src/jalview/gui/AppVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AssociatePdbFileWithSeq.java
b/src/jalview/gui/AssociatePdbFileWithSeq.java
index
1fa9e71
..
e9208e6
100644
(file)
--- a/
src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/
src/jalview/gui/AssociatePdbFileWithSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/BlogReader.java
b/src/jalview/gui/BlogReader.java
index
8326e35
..
566f1c7
100644
(file)
--- a/
src/jalview/gui/BlogReader.java
+++ b/
src/jalview/gui/BlogReader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Console.java
b/src/jalview/gui/Console.java
index
4fe45c8
..
7552dc9
100644
(file)
--- a/
src/jalview/gui/Console.java
+++ b/
src/jalview/gui/Console.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteHtmlTransfer.java
b/src/jalview/gui/CutAndPasteHtmlTransfer.java
index
ca554a0
..
a2ebd0a
100644
(file)
--- a/
src/jalview/gui/CutAndPasteHtmlTransfer.java
+++ b/
src/jalview/gui/CutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteTransfer.java
b/src/jalview/gui/CutAndPasteTransfer.java
index
6ccc5ff
..
c8901d3
100644
(file)
--- a/
src/jalview/gui/CutAndPasteTransfer.java
+++ b/
src/jalview/gui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/DasSourceBrowser.java
b/src/jalview/gui/DasSourceBrowser.java
index
340e134
..
a875bf9
100644
(file)
--- a/
src/jalview/gui/DasSourceBrowser.java
+++ b/
src/jalview/gui/DasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Desktop.java
b/src/jalview/gui/Desktop.java
index
d54c887
..
a0e45a6
100644
(file)
--- a/
src/jalview/gui/Desktop.java
+++ b/
src/jalview/gui/Desktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EPSOptions.java
b/src/jalview/gui/EPSOptions.java
index
551129e
..
9cc1844
100644
(file)
--- a/
src/jalview/gui/EPSOptions.java
+++ b/
src/jalview/gui/EPSOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EditNameDialog.java
b/src/jalview/gui/EditNameDialog.java
index
cd440cd
..
5e69ac7
100644
(file)
--- a/
src/jalview/gui/EditNameDialog.java
+++ b/
src/jalview/gui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureColourChooser.java
b/src/jalview/gui/FeatureColourChooser.java
index
d6ddd16
..
6b28937
100644
(file)
--- a/
src/jalview/gui/FeatureColourChooser.java
+++ b/
src/jalview/gui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureRenderer.java
b/src/jalview/gui/FeatureRenderer.java
index
c07fdcf
..
970160e
100644
(file)
--- a/
src/jalview/gui/FeatureRenderer.java
+++ b/
src/jalview/gui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureSettings.java
b/src/jalview/gui/FeatureSettings.java
index
9e0925b
..
2bd98d5
100644
(file)
--- a/
src/jalview/gui/FeatureSettings.java
+++ b/
src/jalview/gui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Finder.java
b/src/jalview/gui/Finder.java
index
f53af3f
..
3161271
100755
(executable)
--- a/
src/jalview/gui/Finder.java
+++ b/
src/jalview/gui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FontChooser.java
b/src/jalview/gui/FontChooser.java
index
5e1897d
..
ea84207
100755
(executable)
--- a/
src/jalview/gui/FontChooser.java
+++ b/
src/jalview/gui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicator.java
b/src/jalview/gui/IProgressIndicator.java
index
a39d5f2
..
a1e4b2e
100644
(file)
--- a/
src/jalview/gui/IProgressIndicator.java
+++ b/
src/jalview/gui/IProgressIndicator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicatorHandler.java
b/src/jalview/gui/IProgressIndicatorHandler.java
index
183facf
..
c288abd
100644
(file)
--- a/
src/jalview/gui/IProgressIndicatorHandler.java
+++ b/
src/jalview/gui/IProgressIndicatorHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdCanvas.java
b/src/jalview/gui/IdCanvas.java
index
c4c68c2
..
5216f0d
100755
(executable)
--- a/
src/jalview/gui/IdCanvas.java
+++ b/
src/jalview/gui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdPanel.java
b/src/jalview/gui/IdPanel.java
index
97e3366
..
2b87d21
100755
(executable)
--- a/
src/jalview/gui/IdPanel.java
+++ b/
src/jalview/gui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdwidthAdjuster.java
b/src/jalview/gui/IdwidthAdjuster.java
index
c62ab91
..
632d4df
100755
(executable)
--- a/
src/jalview/gui/IdwidthAdjuster.java
+++ b/
src/jalview/gui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JDatabaseTree.java
b/src/jalview/gui/JDatabaseTree.java
index
b7ec5a9
..
b2bbdef
100644
(file)
--- a/
src/jalview/gui/JDatabaseTree.java
+++ b/
src/jalview/gui/JDatabaseTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
b20e144
..
dcf65b7
100644
(file)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML_V1.java
b/src/jalview/gui/Jalview2XML_V1.java
index
9d838f8
..
b470974
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML_V1.java
+++ b/
src/jalview/gui/Jalview2XML_V1.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewAppender.java
b/src/jalview/gui/JalviewAppender.java
index
40a0ac4
..
eb86e58
100644
(file)
--- a/
src/jalview/gui/JalviewAppender.java
+++ b/
src/jalview/gui/JalviewAppender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewChangeSupport.java
b/src/jalview/gui/JalviewChangeSupport.java
index
050b02f
..
d4c1bc1
100644
(file)
--- a/
src/jalview/gui/JalviewChangeSupport.java
+++ b/
src/jalview/gui/JalviewChangeSupport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewDialog.java
b/src/jalview/gui/JalviewDialog.java
index
cfdf313
..
3f58769
100644
(file)
--- a/
src/jalview/gui/JalviewDialog.java
+++ b/
src/jalview/gui/JalviewDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JvSwingUtils.java
b/src/jalview/gui/JvSwingUtils.java
index
641ac62
..
0e3ecd8
100644
(file)
--- a/
src/jalview/gui/JvSwingUtils.java
+++ b/
src/jalview/gui/JvSwingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OOMWarning.java
b/src/jalview/gui/OOMWarning.java
index
261fae8
..
6ab5220
100644
(file)
--- a/
src/jalview/gui/OOMWarning.java
+++ b/
src/jalview/gui/OOMWarning.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsAndParamsPage.java
b/src/jalview/gui/OptsAndParamsPage.java
index
1dd848b
..
5df0174
100644
(file)
--- a/
src/jalview/gui/OptsAndParamsPage.java
+++ b/
src/jalview/gui/OptsAndParamsPage.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsParametersContainerI.java
b/src/jalview/gui/OptsParametersContainerI.java
index
841e99e
..
2d3f59e
100644
(file)
--- a/
src/jalview/gui/OptsParametersContainerI.java
+++ b/
src/jalview/gui/OptsParametersContainerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OverviewPanel.java
b/src/jalview/gui/OverviewPanel.java
index
614326d
..
0b11189
100755
(executable)
--- a/
src/jalview/gui/OverviewPanel.java
+++ b/
src/jalview/gui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
ccc4697
..
d1216b9
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PaintRefresher.java
b/src/jalview/gui/PaintRefresher.java
index
dabf8db
..
01a5f57
100755
(executable)
--- a/
src/jalview/gui/PaintRefresher.java
+++ b/
src/jalview/gui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PairwiseAlignPanel.java
b/src/jalview/gui/PairwiseAlignPanel.java
index
6738556
..
e2f96f1
100755
(executable)
--- a/
src/jalview/gui/PairwiseAlignPanel.java
+++ b/
src/jalview/gui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
66cafc5
..
67bc00f
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
20a136f
..
51138f2
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PromptUserConfig.java
b/src/jalview/gui/PromptUserConfig.java
index
c710a89
..
95b3fd4
100644
(file)
--- a/
src/jalview/gui/PromptUserConfig.java
+++ b/
src/jalview/gui/PromptUserConfig.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RedundancyPanel.java
b/src/jalview/gui/RedundancyPanel.java
index
7b489a7
..
59ee1e7
100755
(executable)
--- a/
src/jalview/gui/RedundancyPanel.java
+++ b/
src/jalview/gui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestInputParamEditDialog.java
b/src/jalview/gui/RestInputParamEditDialog.java
index
764f9c9
..
497bbe2
100644
(file)
--- a/
src/jalview/gui/RestInputParamEditDialog.java
+++ b/
src/jalview/gui/RestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestServiceEditorPane.java
b/src/jalview/gui/RestServiceEditorPane.java
index
2507ceb
..
cfdea05
100644
(file)
--- a/
src/jalview/gui/RestServiceEditorPane.java
+++ b/
src/jalview/gui/RestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RotatableCanvas.java
b/src/jalview/gui/RotatableCanvas.java
index
dba5dae
..
7f31eb1
100755
(executable)
--- a/
src/jalview/gui/RotatableCanvas.java
+++ b/
src/jalview/gui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScalePanel.java
b/src/jalview/gui/ScalePanel.java
index
416b787
..
62f767d
100755
(executable)
--- a/
src/jalview/gui/ScalePanel.java
+++ b/
src/jalview/gui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScriptWindow.java
b/src/jalview/gui/ScriptWindow.java
index
4c8ccd7
..
e9ffd6e
100644
(file)
--- a/
src/jalview/gui/ScriptWindow.java
+++ b/
src/jalview/gui/ScriptWindow.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqCanvas.java
b/src/jalview/gui/SeqCanvas.java
index
77fc1fe
..
e7d9030
100755
(executable)
--- a/
src/jalview/gui/SeqCanvas.java
+++ b/
src/jalview/gui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqPanel.java
b/src/jalview/gui/SeqPanel.java
index
2add218
..
904b856
100644
(file)
--- a/
src/jalview/gui/SeqPanel.java
+++ b/
src/jalview/gui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceFetcher.java
b/src/jalview/gui/SequenceFetcher.java
index
435d218
..
45d944d
100755
(executable)
--- a/
src/jalview/gui/SequenceFetcher.java
+++ b/
src/jalview/gui/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
9023c4e
..
9ca3d83
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SliderPanel.java
b/src/jalview/gui/SliderPanel.java
index
f53204e
..
aa4aa64
100755
(executable)
--- a/
src/jalview/gui/SliderPanel.java
+++ b/
src/jalview/gui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SplashScreen.java
b/src/jalview/gui/SplashScreen.java
index
1006782
..
652aa75
100755
(executable)
--- a/
src/jalview/gui/SplashScreen.java
+++ b/
src/jalview/gui/SplashScreen.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TextColourChooser.java
b/src/jalview/gui/TextColourChooser.java
index
5eadc51
..
2f9422a
100644
(file)
--- a/
src/jalview/gui/TextColourChooser.java
+++ b/
src/jalview/gui/TextColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreeCanvas.java
b/src/jalview/gui/TreeCanvas.java
index
97cca4b
..
5bea550
100755
(executable)
--- a/
src/jalview/gui/TreeCanvas.java
+++ b/
src/jalview/gui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
7f85594
..
923d702
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserDefinedColours.java
b/src/jalview/gui/UserDefinedColours.java
index
a2dedd5
..
e1ff5e0
100755
(executable)
--- a/
src/jalview/gui/UserDefinedColours.java
+++ b/
src/jalview/gui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserQuestionnaireCheck.java
b/src/jalview/gui/UserQuestionnaireCheck.java
index
dc23978
..
cd102b6
100644
(file)
--- a/
src/jalview/gui/UserQuestionnaireCheck.java
+++ b/
src/jalview/gui/UserQuestionnaireCheck.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/VamsasApplication.java
b/src/jalview/gui/VamsasApplication.java
index
5f585b6
..
5ee7e36
100644
(file)
--- a/
src/jalview/gui/VamsasApplication.java
+++ b/
src/jalview/gui/VamsasApplication.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ViewSelectionMenu.java
b/src/jalview/gui/ViewSelectionMenu.java
index
e2bda4c
..
b90f742
100644
(file)
--- a/
src/jalview/gui/ViewSelectionMenu.java
+++ b/
src/jalview/gui/ViewSelectionMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WebserviceInfo.java
b/src/jalview/gui/WebserviceInfo.java
index
760db66
..
723746c
100644
(file)
--- a/
src/jalview/gui/WebserviceInfo.java
+++ b/
src/jalview/gui/WebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsJobParameters.java
b/src/jalview/gui/WsJobParameters.java
index
9b02401
..
b905b63
100644
(file)
--- a/
src/jalview/gui/WsJobParameters.java
+++ b/
src/jalview/gui/WsJobParameters.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsParamSetManager.java
b/src/jalview/gui/WsParamSetManager.java
index
780b30f
..
5335b22
100644
(file)
--- a/
src/jalview/gui/WsParamSetManager.java
+++ b/
src/jalview/gui/WsParamSetManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsPreferences.java
b/src/jalview/gui/WsPreferences.java
index
ab7e341
..
59e6309
100644
(file)
--- a/
src/jalview/gui/WsPreferences.java
+++ b/
src/jalview/gui/WsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
ee3c18c
..
31f9b21
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
7550a5b
..
93803c8
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignmentProperties.java
b/src/jalview/io/AlignmentProperties.java
index
37912be
..
86fa6a0
100644
(file)
--- a/
src/jalview/io/AlignmentProperties.java
+++ b/
src/jalview/io/AlignmentProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AnnotationFile.java
b/src/jalview/io/AnnotationFile.java
index
5979a27
..
9a21fbb
100755
(executable)
--- a/
src/jalview/io/AnnotationFile.java
+++ b/
src/jalview/io/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
6679a03
..
98037e4
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
b95cf1f
..
6ce0d61
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClansFile.java
b/src/jalview/io/ClansFile.java
index
ad9daad
..
b7bfacc
100644
(file)
--- a/
src/jalview/io/ClansFile.java
+++ b/
src/jalview/io/ClansFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
bc6ca7f
..
b45e908
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/DBRefFile.java
b/src/jalview/io/DBRefFile.java
index
c24cbdd
..
c29294a
100644
(file)
--- a/
src/jalview/io/DBRefFile.java
+++ b/
src/jalview/io/DBRefFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FastaFile.java
b/src/jalview/io/FastaFile.java
index
3a7197f
..
d8890af
100755
(executable)
--- a/
src/jalview/io/FastaFile.java
+++ b/
src/jalview/io/FastaFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
a87fd60
..
0c8e226
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileLoader.java
b/src/jalview/io/FileLoader.java
index
9cc1e16
..
b578724
100755
(executable)
--- a/
src/jalview/io/FileLoader.java
+++ b/
src/jalview/io/FileLoader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileParse.java
b/src/jalview/io/FileParse.java
index
69e801c
..
b52fdfb
100755
(executable)
--- a/
src/jalview/io/FileParse.java
+++ b/
src/jalview/io/FileParse.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
6d77acc
..
bb1608d
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
d0fdd32
..
4b4dd93
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/IdentifyFile.java
b/src/jalview/io/IdentifyFile.java
index
93f9a98
..
7ed7cbd
100755
(executable)
--- a/
src/jalview/io/IdentifyFile.java
+++ b/
src/jalview/io/IdentifyFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JPredFile.java
b/src/jalview/io/JPredFile.java
index
155e236
..
a334b4f
100755
(executable)
--- a/
src/jalview/io/JPredFile.java
+++ b/
src/jalview/io/JPredFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileChooser.java
b/src/jalview/io/JalviewFileChooser.java
index
46ecf41
..
a8aa8d4
100755
(executable)
--- a/
src/jalview/io/JalviewFileChooser.java
+++ b/
src/jalview/io/JalviewFileChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileFilter.java
b/src/jalview/io/JalviewFileFilter.java
index
43dda7e
..
2f2499b
100755
(executable)
--- a/
src/jalview/io/JalviewFileFilter.java
+++ b/
src/jalview/io/JalviewFileFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileView.java
b/src/jalview/io/JalviewFileView.java
index
27c6a07
..
0dcc7c2
100755
(executable)
--- a/
src/jalview/io/JalviewFileView.java
+++ b/
src/jalview/io/JalviewFileView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JnetAnnotationMaker.java
b/src/jalview/io/JnetAnnotationMaker.java
index
51cd302
..
8ffcaf7
100755
(executable)
--- a/
src/jalview/io/JnetAnnotationMaker.java
+++ b/
src/jalview/io/JnetAnnotationMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
2d20a40
..
9b6fc89
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MatrixFile.java
b/src/jalview/io/MatrixFile.java
index
42b9578
..
09e150c
100644
(file)
--- a/
src/jalview/io/MatrixFile.java
+++ b/
src/jalview/io/MatrixFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ModellerDescription.java
b/src/jalview/io/ModellerDescription.java
index
a57cefa
..
fd28956
100755
(executable)
--- a/
src/jalview/io/ModellerDescription.java
+++ b/
src/jalview/io/ModellerDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
813ac78
..
b86c170
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PIRFile.java
b/src/jalview/io/PIRFile.java
index
5af94e2
..
6db8cd4
100755
(executable)
--- a/
src/jalview/io/PIRFile.java
+++ b/
src/jalview/io/PIRFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PfamFile.java
b/src/jalview/io/PfamFile.java
index
ba1a9b9
..
6b617f8
100755
(executable)
--- a/
src/jalview/io/PfamFile.java
+++ b/
src/jalview/io/PfamFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
f489d80
..
24c4239
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SequenceAnnotationReport.java
b/src/jalview/io/SequenceAnnotationReport.java
index
fbcc436
..
74cfa86
100644
(file)
--- a/
src/jalview/io/SequenceAnnotationReport.java
+++ b/
src/jalview/io/SequenceAnnotationReport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SimpleBlastFile.java
b/src/jalview/io/SimpleBlastFile.java
index
b8d7569
..
70ccb26
100644
(file)
--- a/
src/jalview/io/SimpleBlastFile.java
+++ b/
src/jalview/io/SimpleBlastFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
4566bac
..
9b5a5cd
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/TCoffeeScoreFile.java
b/src/jalview/io/TCoffeeScoreFile.java
index
602b0d0
..
274f532
100644
(file)
--- a/
src/jalview/io/TCoffeeScoreFile.java
+++ b/
src/jalview/io/TCoffeeScoreFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
34c61d9
..
8d1c275
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/WSWUBlastClient.java
b/src/jalview/io/WSWUBlastClient.java
index
732c072
..
df15b5e
100755
(executable)
--- a/
src/jalview/io/WSWUBlastClient.java
+++ b/
src/jalview/io/WSWUBlastClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/DataProvider.java
b/src/jalview/io/packed/DataProvider.java
index
80fc0c0
..
c50c69a
100644
(file)
--- a/
src/jalview/io/packed/DataProvider.java
+++ b/
src/jalview/io/packed/DataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/JalviewDataset.java
b/src/jalview/io/packed/JalviewDataset.java
index
b3f061c
..
40c80a6
100644
(file)
--- a/
src/jalview/io/packed/JalviewDataset.java
+++ b/
src/jalview/io/packed/JalviewDataset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/ParsePackedSet.java
b/src/jalview/io/packed/ParsePackedSet.java
index
17e94e7
..
3130b9e
100644
(file)
--- a/
src/jalview/io/packed/ParsePackedSet.java
+++ b/
src/jalview/io/packed/ParsePackedSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/SimpleDataProvider.java
b/src/jalview/io/packed/SimpleDataProvider.java
index
4806f91
..
fdfd019
100644
(file)
--- a/
src/jalview/io/packed/SimpleDataProvider.java
+++ b/
src/jalview/io/packed/SimpleDataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Datasetsequence.java
b/src/jalview/io/vamsas/Datasetsequence.java
index
08e6288
..
841d357
100644
(file)
--- a/
src/jalview/io/vamsas/Datasetsequence.java
+++ b/
src/jalview/io/vamsas/Datasetsequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreItem.java
b/src/jalview/io/vamsas/DatastoreItem.java
index
0fae890
..
65ccec1
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreItem.java
+++ b/
src/jalview/io/vamsas/DatastoreItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreRegistry.java
b/src/jalview/io/vamsas/DatastoreRegistry.java
index
468cb7a
..
0d76285
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/
src/jalview/io/vamsas/DatastoreRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Dbref.java
b/src/jalview/io/vamsas/Dbref.java
index
68bc498
..
0f43bc3
100644
(file)
--- a/
src/jalview/io/vamsas/Dbref.java
+++ b/
src/jalview/io/vamsas/Dbref.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/LocalDocSyncObject.java
b/src/jalview/io/vamsas/LocalDocSyncObject.java
index
881404d
..
2c7bfe0
100644
(file)
--- a/
src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/
src/jalview/io/vamsas/LocalDocSyncObject.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Rangetype.java
b/src/jalview/io/vamsas/Rangetype.java
index
281e8a4
..
fb16f55
100644
(file)
--- a/
src/jalview/io/vamsas/Rangetype.java
+++ b/
src/jalview/io/vamsas/Rangetype.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencefeature.java
b/src/jalview/io/vamsas/Sequencefeature.java
index
5d04c4c
..
9cde411
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencefeature.java
+++ b/
src/jalview/io/vamsas/Sequencefeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
241ff85
..
5dcf4e8
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Tree.java
b/src/jalview/io/vamsas/Tree.java
index
43febb4
..
27aacce
100644
(file)
--- a/
src/jalview/io/vamsas/Tree.java
+++ b/
src/jalview/io/vamsas/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JSFunctionExec.java
b/src/jalview/javascript/JSFunctionExec.java
index
4ed9a08
..
34d1d2e
100644
(file)
--- a/
src/jalview/javascript/JSFunctionExec.java
+++ b/
src/jalview/javascript/JSFunctionExec.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JalviewLiteJsApi.java
b/src/jalview/javascript/JalviewLiteJsApi.java
index
25eb3be
..
6878fac
100644
(file)
--- a/
src/jalview/javascript/JalviewLiteJsApi.java
+++ b/
src/jalview/javascript/JalviewLiteJsApi.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsCallBack.java
b/src/jalview/javascript/JsCallBack.java
index
7c86360
..
9320538
100644
(file)
--- a/
src/jalview/javascript/JsCallBack.java
+++ b/
src/jalview/javascript/JsCallBack.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsSelectionSender.java
b/src/jalview/javascript/JsSelectionSender.java
index
66b1cac
..
7ecd675
100644
(file)
--- a/
src/jalview/javascript/JsSelectionSender.java
+++ b/
src/jalview/javascript/JsSelectionSender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverListener.java
b/src/jalview/javascript/MouseOverListener.java
index
cb3fee7
..
4115a9e
100644
(file)
--- a/
src/jalview/javascript/MouseOverListener.java
+++ b/
src/jalview/javascript/MouseOverListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverStructureListener.java
b/src/jalview/javascript/MouseOverStructureListener.java
index
9d7e0cc
..
766393e
100644
(file)
--- a/
src/jalview/javascript/MouseOverStructureListener.java
+++ b/
src/jalview/javascript/MouseOverStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignFrame.java
b/src/jalview/jbgui/GAlignFrame.java
index
cf78585
..
6e98f74
100755
(executable)
--- a/
src/jalview/jbgui/GAlignFrame.java
+++ b/
src/jalview/jbgui/GAlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignmentPanel.java
b/src/jalview/jbgui/GAlignmentPanel.java
index
4a20adb
..
6a7ab97
100755
(executable)
--- a/
src/jalview/jbgui/GAlignmentPanel.java
+++ b/
src/jalview/jbgui/GAlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
index
38fe7a3
..
5f74844
100644
(file)
--- a/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteTransfer.java
b/src/jalview/jbgui/GCutAndPasteTransfer.java
index
ecfe2af
..
4149c85
100755
(executable)
--- a/
src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDasSourceBrowser.java
b/src/jalview/jbgui/GDasSourceBrowser.java
index
e01d0c7
..
b16c013
100755
(executable)
--- a/
src/jalview/jbgui/GDasSourceBrowser.java
+++ b/
src/jalview/jbgui/GDasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDesktop.java
b/src/jalview/jbgui/GDesktop.java
index
4ef6fdd
..
ab9a0a3
100755
(executable)
--- a/
src/jalview/jbgui/GDesktop.java
+++ b/
src/jalview/jbgui/GDesktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFinder.java
b/src/jalview/jbgui/GFinder.java
index
d811fee
..
08fdf39
100755
(executable)
--- a/
src/jalview/jbgui/GFinder.java
+++ b/
src/jalview/jbgui/GFinder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFontChooser.java
b/src/jalview/jbgui/GFontChooser.java
index
5f1748e
..
6985972
100755
(executable)
--- a/
src/jalview/jbgui/GFontChooser.java
+++ b/
src/jalview/jbgui/GFontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPCAPanel.java
b/src/jalview/jbgui/GPCAPanel.java
index
266bfc6
..
3fe76ac
100755
(executable)
--- a/
src/jalview/jbgui/GPCAPanel.java
+++ b/
src/jalview/jbgui/GPCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPairwiseAlignPanel.java
b/src/jalview/jbgui/GPairwiseAlignPanel.java
index
7a7392d
..
57e1348
100755
(executable)
--- a/
src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/
src/jalview/jbgui/GPairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPreferences.java
b/src/jalview/jbgui/GPreferences.java
index
a8626d8
..
d1df38d
100755
(executable)
--- a/
src/jalview/jbgui/GPreferences.java
+++ b/
src/jalview/jbgui/GPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestInputParamEditDialog.java
b/src/jalview/jbgui/GRestInputParamEditDialog.java
index
9580d43
..
f1ce039
100644
(file)
--- a/
src/jalview/jbgui/GRestInputParamEditDialog.java
+++ b/
src/jalview/jbgui/GRestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestServiceEditorPane.java
b/src/jalview/jbgui/GRestServiceEditorPane.java
index
97ad295
..
50048aa
100644
(file)
--- a/
src/jalview/jbgui/GRestServiceEditorPane.java
+++ b/
src/jalview/jbgui/GRestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRnaStructureViewer.java
b/src/jalview/jbgui/GRnaStructureViewer.java
index
dd39080
..
9e72a13
100644
(file)
--- a/
src/jalview/jbgui/GRnaStructureViewer.java
+++ b/
src/jalview/jbgui/GRnaStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSequenceLink.java
b/src/jalview/jbgui/GSequenceLink.java
index
cb4d90f
..
d3b9c54
100755
(executable)
--- a/
src/jalview/jbgui/GSequenceLink.java
+++ b/
src/jalview/jbgui/GSequenceLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSliderPanel.java
b/src/jalview/jbgui/GSliderPanel.java
index
72224c3
..
4c5edf5
100755
(executable)
--- a/
src/jalview/jbgui/GSliderPanel.java
+++ b/
src/jalview/jbgui/GSliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GStructureViewer.java
b/src/jalview/jbgui/GStructureViewer.java
index
c60d732
..
720138a
100644
(file)
--- a/
src/jalview/jbgui/GStructureViewer.java
+++ b/
src/jalview/jbgui/GStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GTreePanel.java
b/src/jalview/jbgui/GTreePanel.java
index
47f94c5
..
1b35d51
100755
(executable)
--- a/
src/jalview/jbgui/GTreePanel.java
+++ b/
src/jalview/jbgui/GTreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GUserDefinedColours.java
b/src/jalview/jbgui/GUserDefinedColours.java
index
e097d85
..
1f4fc9d
100755
(executable)
--- a/
src/jalview/jbgui/GUserDefinedColours.java
+++ b/
src/jalview/jbgui/GUserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWebserviceInfo.java
b/src/jalview/jbgui/GWebserviceInfo.java
index
21d9b47
..
0d99704
100755
(executable)
--- a/
src/jalview/jbgui/GWebserviceInfo.java
+++ b/
src/jalview/jbgui/GWebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWsPreferences.java
b/src/jalview/jbgui/GWsPreferences.java
index
3ad5bb1
..
cae8232
100644
(file)
--- a/
src/jalview/jbgui/GWsPreferences.java
+++ b/
src/jalview/jbgui/GWsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/Matrix.java
b/src/jalview/math/Matrix.java
index
8d95203
..
87b0ef3
100755
(executable)
--- a/
src/jalview/math/Matrix.java
+++ b/
src/jalview/math/Matrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/RotatableMatrix.java
b/src/jalview/math/RotatableMatrix.java
index
e2ed0c0
..
a4c2940
100755
(executable)
--- a/
src/jalview/math/RotatableMatrix.java
+++ b/
src/jalview/math/RotatableMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AnnotationRenderer.java
b/src/jalview/renderer/AnnotationRenderer.java
index
d951aba
..
5a53b71
100644
(file)
--- a/
src/jalview/renderer/AnnotationRenderer.java
+++ b/
src/jalview/renderer/AnnotationRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AwtRenderPanelI.java
b/src/jalview/renderer/AwtRenderPanelI.java
index
678233e
..
1d46ae3
100644
(file)
--- a/
src/jalview/renderer/AwtRenderPanelI.java
+++ b/
src/jalview/renderer/AwtRenderPanelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AlcodMap.java
b/src/jalview/schemabinding/version2/AlcodMap.java
index
f423223
..
8fd8e28
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodMap.java
+++ b/
src/jalview/schemabinding/version2/AlcodMap.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Alcodon.java
b/src/jalview/schemabinding/version2/Alcodon.java
index
f5654e9
..
fd16b40
100644
(file)
--- a/
src/jalview/schemabinding/version2/Alcodon.java
+++ b/
src/jalview/schemabinding/version2/Alcodon.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AlcodonFrame.java
b/src/jalview/schemabinding/version2/AlcodonFrame.java
index
d3fde76
..
cf48788
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/
src/jalview/schemabinding/version2/AlcodonFrame.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Annotation.java
b/src/jalview/schemabinding/version2/Annotation.java
index
98c202e
..
1c0de1e
100644
(file)
--- a/
src/jalview/schemabinding/version2/Annotation.java
+++ b/
src/jalview/schemabinding/version2/Annotation.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationColourScheme.java
b/src/jalview/schemabinding/version2/AnnotationColourScheme.java
index
8bf97d5
..
ca7fbc9
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationColourScheme.java
+++ b/
src/jalview/schemabinding/version2/AnnotationColourScheme.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationColours.java
b/src/jalview/schemabinding/version2/AnnotationColours.java
index
cbda218
..
9f2eada
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/
src/jalview/schemabinding/version2/AnnotationColours.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationElement.java
b/src/jalview/schemabinding/version2/AnnotationElement.java
index
a558e86
..
26dbe15
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/
src/jalview/schemabinding/version2/AnnotationElement.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/CalcIdParam.java
b/src/jalview/schemabinding/version2/CalcIdParam.java
index
aab1434
..
dd4b584
100644
(file)
--- a/
src/jalview/schemabinding/version2/CalcIdParam.java
+++ b/
src/jalview/schemabinding/version2/CalcIdParam.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Colour.java
b/src/jalview/schemabinding/version2/Colour.java
index
70409b6
..
4933206
100644
(file)
--- a/
src/jalview/schemabinding/version2/Colour.java
+++ b/
src/jalview/schemabinding/version2/Colour.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/DBRef.java
b/src/jalview/schemabinding/version2/DBRef.java
index
de43ff4
..
27e1018
100644
(file)
--- a/
src/jalview/schemabinding/version2/DBRef.java
+++ b/
src/jalview/schemabinding/version2/DBRef.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Feature.java
b/src/jalview/schemabinding/version2/Feature.java
index
d7deeff
..
130d515
100644
(file)
--- a/
src/jalview/schemabinding/version2/Feature.java
+++ b/
src/jalview/schemabinding/version2/Feature.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/FeatureSettings.java
b/src/jalview/schemabinding/version2/FeatureSettings.java
index
30afdb4
..
e975554
100644
(file)
--- a/
src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/
src/jalview/schemabinding/version2/FeatureSettings.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Features.java
b/src/jalview/schemabinding/version2/Features.java
index
cfcd531
..
d66d8e8
100644
(file)
--- a/
src/jalview/schemabinding/version2/Features.java
+++ b/
src/jalview/schemabinding/version2/Features.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Group.java
b/src/jalview/schemabinding/version2/Group.java
index
f71c873
..
c16d352
100644
(file)
--- a/
src/jalview/schemabinding/version2/Group.java
+++ b/
src/jalview/schemabinding/version2/Group.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/HiddenColumns.java
b/src/jalview/schemabinding/version2/HiddenColumns.java
index
01ec035
..
811ad33
100644
(file)
--- a/
src/jalview/schemabinding/version2/HiddenColumns.java
+++ b/
src/jalview/schemabinding/version2/HiddenColumns.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JGroup.java
b/src/jalview/schemabinding/version2/JGroup.java
index
44e8739
..
a1f62bc
100644
(file)
--- a/
src/jalview/schemabinding/version2/JGroup.java
+++ b/
src/jalview/schemabinding/version2/JGroup.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JSeq.java
b/src/jalview/schemabinding/version2/JSeq.java
index
070ef7f
..
aa38064
100644
(file)
--- a/
src/jalview/schemabinding/version2/JSeq.java
+++ b/
src/jalview/schemabinding/version2/JSeq.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewModel.java
b/src/jalview/schemabinding/version2/JalviewModel.java
index
5ffff2a
..
6ab4caf
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewModel.java
+++ b/
src/jalview/schemabinding/version2/JalviewModel.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewModelSequence.java
b/src/jalview/schemabinding/version2/JalviewModelSequence.java
index
1e3095c
..
7fd186b
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/
src/jalview/schemabinding/version2/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewUserColours.java
b/src/jalview/schemabinding/version2/JalviewUserColours.java
index
2719ecd
..
ccb0963
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewUserColours.java
+++ b/
src/jalview/schemabinding/version2/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListFrom.java
b/src/jalview/schemabinding/version2/MapListFrom.java
index
2eeb726
..
2817fd6
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListFrom.java
+++ b/
src/jalview/schemabinding/version2/MapListFrom.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListTo.java
b/src/jalview/schemabinding/version2/MapListTo.java
index
55c54a5
..
f185d87
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListTo.java
+++ b/
src/jalview/schemabinding/version2/MapListTo.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListType.java
b/src/jalview/schemabinding/version2/MapListType.java
index
d94d197
..
04de497
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListType.java
+++ b/
src/jalview/schemabinding/version2/MapListType.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Mapping.java
b/src/jalview/schemabinding/version2/Mapping.java
index
69b7413
..
91d03d9
100644
(file)
--- a/
src/jalview/schemabinding/version2/Mapping.java
+++ b/
src/jalview/schemabinding/version2/Mapping.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MappingChoice.java
b/src/jalview/schemabinding/version2/MappingChoice.java
index
b0f49d0
..
614efba
100644
(file)
--- a/
src/jalview/schemabinding/version2/MappingChoice.java
+++ b/
src/jalview/schemabinding/version2/MappingChoice.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/OtherData.java
b/src/jalview/schemabinding/version2/OtherData.java
index
7908828
..
2e5772d
100644
(file)
--- a/
src/jalview/schemabinding/version2/OtherData.java
+++ b/
src/jalview/schemabinding/version2/OtherData.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Pdbentry.java
b/src/jalview/schemabinding/version2/Pdbentry.java
index
a2584c2
..
f207ddc
100644
(file)
--- a/
src/jalview/schemabinding/version2/Pdbentry.java
+++ b/
src/jalview/schemabinding/version2/Pdbentry.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/PdbentryItem.java
b/src/jalview/schemabinding/version2/PdbentryItem.java
index
357c939
..
84aef38
100644
(file)
--- a/
src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/
src/jalview/schemabinding/version2/PdbentryItem.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Pdbids.java
b/src/jalview/schemabinding/version2/Pdbids.java
index
8c34216
..
5e3f13a
100644
(file)
--- a/
src/jalview/schemabinding/version2/Pdbids.java
+++ b/
src/jalview/schemabinding/version2/Pdbids.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Property.java
b/src/jalview/schemabinding/version2/Property.java
index
e91bd35
..
34e0d57
100644
(file)
--- a/
src/jalview/schemabinding/version2/Property.java
+++ b/
src/jalview/schemabinding/version2/Property.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Sequence.java
b/src/jalview/schemabinding/version2/Sequence.java
index
501c44e
..
50ca919
100644
(file)
--- a/
src/jalview/schemabinding/version2/Sequence.java
+++ b/
src/jalview/schemabinding/version2/Sequence.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceSet.java
b/src/jalview/schemabinding/version2/SequenceSet.java
index
e399ed4
..
568df1f
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceSet.java
+++ b/
src/jalview/schemabinding/version2/SequenceSet.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceSetProperties.java
b/src/jalview/schemabinding/version2/SequenceSetProperties.java
index
b46fb1d
..
d01f875
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceSetProperties.java
+++ b/
src/jalview/schemabinding/version2/SequenceSetProperties.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceType.java
b/src/jalview/schemabinding/version2/SequenceType.java
index
1a6dc08
..
157c83e
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceType.java
+++ b/
src/jalview/schemabinding/version2/SequenceType.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Setting.java
b/src/jalview/schemabinding/version2/Setting.java
index
9de7b21
..
58779c5
100644
(file)
--- a/
src/jalview/schemabinding/version2/Setting.java
+++ b/
src/jalview/schemabinding/version2/Setting.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/StructureState.java
b/src/jalview/schemabinding/version2/StructureState.java
index
428b3db
..
82e3e7b
100644
(file)
--- a/
src/jalview/schemabinding/version2/StructureState.java
+++ b/
src/jalview/schemabinding/version2/StructureState.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/ThresholdLine.java
b/src/jalview/schemabinding/version2/ThresholdLine.java
index
2e90527
..
5d5c376
100644
(file)
--- a/
src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/
src/jalview/schemabinding/version2/ThresholdLine.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Tree.java
b/src/jalview/schemabinding/version2/Tree.java
index
a2a13cb
..
a459edc
100644
(file)
--- a/
src/jalview/schemabinding/version2/Tree.java
+++ b/
src/jalview/schemabinding/version2/Tree.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/UserColourScheme.java
b/src/jalview/schemabinding/version2/UserColourScheme.java
index
da78647
..
3625d87
100644
(file)
--- a/
src/jalview/schemabinding/version2/UserColourScheme.java
+++ b/
src/jalview/schemabinding/version2/UserColourScheme.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/UserColours.java
b/src/jalview/schemabinding/version2/UserColours.java
index
4c75230
..
2a223d4
100644
(file)
--- a/
src/jalview/schemabinding/version2/UserColours.java
+++ b/
src/jalview/schemabinding/version2/UserColours.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/VAMSAS.java
b/src/jalview/schemabinding/version2/VAMSAS.java
index
2d3e829
..
2c56862
100644
(file)
--- a/
src/jalview/schemabinding/version2/VAMSAS.java
+++ b/
src/jalview/schemabinding/version2/VAMSAS.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/VamsasModel.java
b/src/jalview/schemabinding/version2/VamsasModel.java
index
7ea0a45
..
ffde324
100644
(file)
--- a/
src/jalview/schemabinding/version2/VamsasModel.java
+++ b/
src/jalview/schemabinding/version2/VamsasModel.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Viewport.java
b/src/jalview/schemabinding/version2/Viewport.java
index
a3e20c6
..
8dbb94b
100644
(file)
--- a/
src/jalview/schemabinding/version2/Viewport.java
+++ b/
src/jalview/schemabinding/version2/Viewport.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/WebServiceParameterSet.java
b/src/jalview/schemabinding/version2/WebServiceParameterSet.java
index
b645f0b
..
481c0ce
100644
(file)
--- a/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
+++ b/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
index
7adf1d0
..
f20ad7a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
index
47d6e01
..
171b8af
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
index
1cebb2a
..
7ff61af
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
index
98f2855
..
870a90d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
index
5eb3939
..
7ddb280
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
index
eac9bc7
..
fdb7d00
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
index
24a90b9
..
83a9941
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
index
007175c
..
7117178
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
index
a8a2cf5
..
493347d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
index
514e2d3
..
3b5f1dc
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
index
403e432
..
4fd913f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
index
75586b6
..
3f41d5d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
index
498d18d
..
cdc2b0a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
index
0dad270
..
d2ffed1
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
index
ebcec89
..
a5fdfa0
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
index
aec96ef
..
47917d6
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
index
8be5479
..
ba1c904
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
index
31127fa
..
22d130f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
index
01b416c
..
b1ff133
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
index
c70f679
..
34f4d98
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
index
9aa7542
..
05a7ccc
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
index
efdf00f
..
96bfee6
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
index
8402449
..
a84177b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
index
1d57dd5
..
4498c7a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
index
b192ad8
..
24520c8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
index
69ae032
..
057a804
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
index
001c3e5
..
afb41ba
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
index
5748515
..
5f823dc
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
index
2b0f360
..
24108d4
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
index
eca975a
..
a231d17
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
index
478f2cf
..
a4e83f4
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
index
09ffdfc
..
e9e0cb8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
index
e7b075d
..
06ee93d
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
index
904bd47
..
8e60014
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
index
dd318b3
..
38c5fcf
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
index
9d82b98
..
b687586
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
index
671b60f
..
96cf9c7
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
index
b24356e
..
6d92ec3
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
index
919b3b6
..
b4253f6
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
index
7725ad1
..
0c27408
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
index
6148798
..
e35407c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
index
d9e97f5
..
60ab87e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
index
5485480
..
f995afa
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
index
ba75d45
..
396379f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
@@
-1,5
+1,5
@@
/*******************************************************************************
/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/AnnotationColourGradient.java
b/src/jalview/schemes/AnnotationColourGradient.java
index
8f0626f
..
301eb73
100755
(executable)
--- a/
src/jalview/schemes/AnnotationColourGradient.java
+++ b/
src/jalview/schemes/AnnotationColourGradient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
b43afec
..
8d8eba0
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/BuriedColourScheme.java
b/src/jalview/schemes/BuriedColourScheme.java
index
5caa275
..
f7b186f
100755
(executable)
--- a/
src/jalview/schemes/BuriedColourScheme.java
+++ b/
src/jalview/schemes/BuriedColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
77d7e5b
..
30addb0
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeI.java
b/src/jalview/schemes/ColourSchemeI.java
index
536efe7
..
66be80d
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeI.java
+++ b/
src/jalview/schemes/ColourSchemeI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeProperty.java
b/src/jalview/schemes/ColourSchemeProperty.java
index
76b1ff1
..
04ffbe9
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeProperty.java
+++ b/
src/jalview/schemes/ColourSchemeProperty.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Consensus.java
b/src/jalview/schemes/Consensus.java
index
91e0fff
..
b5cfcc9
100755
(executable)
--- a/
src/jalview/schemes/Consensus.java
+++ b/
src/jalview/schemes/Consensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/CovariationColourScheme.java
b/src/jalview/schemes/CovariationColourScheme.java
index
e410d50
..
62d0b7b
100644
(file)
--- a/
src/jalview/schemes/CovariationColourScheme.java
+++ b/
src/jalview/schemes/CovariationColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/GraduatedColor.java
b/src/jalview/schemes/GraduatedColor.java
index
caed820
..
665a78b
100644
(file)
--- a/
src/jalview/schemes/GraduatedColor.java
+++ b/
src/jalview/schemes/GraduatedColor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HelixColourScheme.java
b/src/jalview/schemes/HelixColourScheme.java
index
cb0079e
..
b060788
100755
(executable)
--- a/
src/jalview/schemes/HelixColourScheme.java
+++ b/
src/jalview/schemes/HelixColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HydrophobicColourScheme.java
b/src/jalview/schemes/HydrophobicColourScheme.java
index
46d93eb
..
4674aed
100755
(executable)
--- a/
src/jalview/schemes/HydrophobicColourScheme.java
+++ b/
src/jalview/schemes/HydrophobicColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
c359382
..
6b1ac51
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PIDColourScheme.java
b/src/jalview/schemes/PIDColourScheme.java
index
a500914
..
57a5023
100755
(executable)
--- a/
src/jalview/schemes/PIDColourScheme.java
+++ b/
src/jalview/schemes/PIDColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PurinePyrimidineColourScheme.java
b/src/jalview/schemes/PurinePyrimidineColourScheme.java
index
094ee61
..
0a088c6
100644
(file)
--- a/
src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/
src/jalview/schemes/PurinePyrimidineColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColour.java
b/src/jalview/schemes/RNAHelicesColour.java
index
06553f0
..
0a37052
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColour.java
+++ b/
src/jalview/schemes/RNAHelicesColour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColourChooser.java
b/src/jalview/schemes/RNAHelicesColourChooser.java
index
bcac5c7
..
cfa20f4
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/
src/jalview/schemes/RNAHelicesColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueColourScheme.java
b/src/jalview/schemes/ResidueColourScheme.java
index
8b3150b
..
4eefcda
100755
(executable)
--- a/
src/jalview/schemes/ResidueColourScheme.java
+++ b/
src/jalview/schemes/ResidueColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
a277868
..
2050147
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreColourScheme.java
b/src/jalview/schemes/ScoreColourScheme.java
index
8198ff1
..
6eef929
100755
(executable)
--- a/
src/jalview/schemes/ScoreColourScheme.java
+++ b/
src/jalview/schemes/ScoreColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreMatrix.java
b/src/jalview/schemes/ScoreMatrix.java
index
ab603e1
..
8ef7930
100644
(file)
--- a/
src/jalview/schemes/ScoreMatrix.java
+++ b/
src/jalview/schemes/ScoreMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/StrandColourScheme.java
b/src/jalview/schemes/StrandColourScheme.java
index
3303f12
..
6b4b597
100755
(executable)
--- a/
src/jalview/schemes/StrandColourScheme.java
+++ b/
src/jalview/schemes/StrandColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TCoffeeColourScheme.java
b/src/jalview/schemes/TCoffeeColourScheme.java
index
1c8e469
..
cd2681b
100644
(file)
--- a/
src/jalview/schemes/TCoffeeColourScheme.java
+++ b/
src/jalview/schemes/TCoffeeColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TaylorColourScheme.java
b/src/jalview/schemes/TaylorColourScheme.java
index
2274c22
..
80cb1fe
100755
(executable)
--- a/
src/jalview/schemes/TaylorColourScheme.java
+++ b/
src/jalview/schemes/TaylorColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TurnColourScheme.java
b/src/jalview/schemes/TurnColourScheme.java
index
c3b436a
..
1cc297a
100755
(executable)
--- a/
src/jalview/schemes/TurnColourScheme.java
+++ b/
src/jalview/schemes/TurnColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/UserColourScheme.java
b/src/jalview/schemes/UserColourScheme.java
index
eb9f7b1
..
08b7abf
100755
(executable)
--- a/
src/jalview/schemes/UserColourScheme.java
+++ b/
src/jalview/schemes/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ZappoColourScheme.java
b/src/jalview/schemes/ZappoColourScheme.java
index
6760a90
..
d2cdde9
100755
(executable)
--- a/
src/jalview/schemes/ZappoColourScheme.java
+++ b/
src/jalview/schemes/ZappoColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/AlignmentViewPanelListener.java
b/src/jalview/structure/AlignmentViewPanelListener.java
index
ceb8b73
..
2dcc4d0
100644
(file)
--- a/
src/jalview/structure/AlignmentViewPanelListener.java
+++ b/
src/jalview/structure/AlignmentViewPanelListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SecondaryStructureListener.java
b/src/jalview/structure/SecondaryStructureListener.java
index
ad38657
..
c01e0dd
100644
(file)
--- a/
src/jalview/structure/SecondaryStructureListener.java
+++ b/
src/jalview/structure/SecondaryStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionListener.java
b/src/jalview/structure/SelectionListener.java
index
e754035
..
7c5f450
100644
(file)
--- a/
src/jalview/structure/SelectionListener.java
+++ b/
src/jalview/structure/SelectionListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionSource.java
b/src/jalview/structure/SelectionSource.java
index
43c5408
..
1e28bd4
100644
(file)
--- a/
src/jalview/structure/SelectionSource.java
+++ b/
src/jalview/structure/SelectionSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SequenceListener.java
b/src/jalview/structure/SequenceListener.java
index
1a78f08
..
bf53258
100644
(file)
--- a/
src/jalview/structure/SequenceListener.java
+++ b/
src/jalview/structure/SequenceListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureListener.java
b/src/jalview/structure/StructureListener.java
index
bf3ca2d
..
eef46a7
100644
(file)
--- a/
src/jalview/structure/StructureListener.java
+++ b/
src/jalview/structure/StructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMapping.java
b/src/jalview/structure/StructureMapping.java
index
c66b740
..
d28446f
100644
(file)
--- a/
src/jalview/structure/StructureMapping.java
+++ b/
src/jalview/structure/StructureMapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMappingcommandSet.java
b/src/jalview/structure/StructureMappingcommandSet.java
index
e3256f6
..
a0eaf7b
100644
(file)
--- a/
src/jalview/structure/StructureMappingcommandSet.java
+++ b/
src/jalview/structure/StructureMappingcommandSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
bbee3b7
..
bf14000
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasListener.java
b/src/jalview/structure/VamsasListener.java
index
f5fc84d
..
145d2d5
100644
(file)
--- a/
src/jalview/structure/VamsasListener.java
+++ b/
src/jalview/structure/VamsasListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasSource.java
b/src/jalview/structure/VamsasSource.java
index
01be511
..
cab0c23
100644
(file)
--- a/
src/jalview/structure/VamsasSource.java
+++ b/
src/jalview/structure/VamsasSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/AWTConsole.java
b/src/jalview/util/AWTConsole.java
index
cfcf396
..
3ac2927
100644
(file)
--- a/
src/jalview/util/AWTConsole.java
+++ b/
src/jalview/util/AWTConsole.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/BrowserLauncher.java
b/src/jalview/util/BrowserLauncher.java
index
634ffc7
..
cf898b7
100755
(executable)
--- a/
src/jalview/util/BrowserLauncher.java
+++ b/
src/jalview/util/BrowserLauncher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ColorUtils.java
b/src/jalview/util/ColorUtils.java
index
13adc7e
..
1ab6361
100644
(file)
--- a/
src/jalview/util/ColorUtils.java
+++ b/
src/jalview/util/ColorUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Comparison.java
b/src/jalview/util/Comparison.java
index
bd8abbd
..
4f2c0a7
100644
(file)
--- a/
src/jalview/util/Comparison.java
+++ b/
src/jalview/util/Comparison.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
96cd8db
..
884af30
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Format.java
b/src/jalview/util/Format.java
index
ddc4ceb
..
5bab738
100755
(executable)
--- a/
src/jalview/util/Format.java
+++ b/
src/jalview/util/Format.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/GroupUrlLink.java
b/src/jalview/util/GroupUrlLink.java
index
7224681
..
4642ad8
100644
(file)
--- a/
src/jalview/util/GroupUrlLink.java
+++ b/
src/jalview/util/GroupUrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ImageMaker.java
b/src/jalview/util/ImageMaker.java
index
4d11276
..
7c429f3
100755
(executable)
--- a/
src/jalview/util/ImageMaker.java
+++ b/
src/jalview/util/ImageMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MapList.java
b/src/jalview/util/MapList.java
index
d712721
..
c7a32f7
100644
(file)
--- a/
src/jalview/util/MapList.java
+++ b/
src/jalview/util/MapList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ParseHtmlBodyAndLinks.java
b/src/jalview/util/ParseHtmlBodyAndLinks.java
index
b0b8ef8
..
102bead
100644
(file)
--- a/
src/jalview/util/ParseHtmlBodyAndLinks.java
+++ b/
src/jalview/util/ParseHtmlBodyAndLinks.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Platform.java
b/src/jalview/util/Platform.java
index
8287ca3
..
8c406a9
100644
(file)
--- a/
src/jalview/util/Platform.java
+++ b/
src/jalview/util/Platform.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/QuickSort.java
b/src/jalview/util/QuickSort.java
index
20f1ac7
..
1d9d8ec
100755
(executable)
--- a/
src/jalview/util/QuickSort.java
+++ b/
src/jalview/util/QuickSort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ShiftList.java
b/src/jalview/util/ShiftList.java
index
54a5218
..
3c0683a
100644
(file)
--- a/
src/jalview/util/ShiftList.java
+++ b/
src/jalview/util/ShiftList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/TableSorter.java
b/src/jalview/util/TableSorter.java
index
dcb5330
..
3352cbb
100755
(executable)
--- a/
src/jalview/util/TableSorter.java
+++ b/
src/jalview/util/TableSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/UrlLink.java
b/src/jalview/util/UrlLink.java
index
80a4380
..
2936ac3
100644
(file)
--- a/
src/jalview/util/UrlLink.java
+++ b/
src/jalview/util/UrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/jarInputStreamProvider.java
b/src/jalview/util/jarInputStreamProvider.java
index
8829118
..
76e612f
100644
(file)
--- a/
src/jalview/util/jarInputStreamProvider.java
+++ b/
src/jalview/util/jarInputStreamProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/AlignmentViewport.java
b/src/jalview/viewmodel/AlignmentViewport.java
index
44ecf76
..
e25818e
100644
(file)
--- a/
src/jalview/viewmodel/AlignmentViewport.java
+++ b/
src/jalview/viewmodel/AlignmentViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/PCAModel.java
b/src/jalview/viewmodel/PCAModel.java
index
00cc94b
..
a9c8787
100644
(file)
--- a/
src/jalview/viewmodel/PCAModel.java
+++ b/
src/jalview/viewmodel/PCAModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcManager.java
b/src/jalview/workers/AlignCalcManager.java
index
a9af5e7
..
6a2d6ee
100644
(file)
--- a/
src/jalview/workers/AlignCalcManager.java
+++ b/
src/jalview/workers/AlignCalcManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcWorker.java
b/src/jalview/workers/AlignCalcWorker.java
index
7497e7a
..
18bff53
100644
(file)
--- a/
src/jalview/workers/AlignCalcWorker.java
+++ b/
src/jalview/workers/AlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConsensusThread.java
b/src/jalview/workers/ConsensusThread.java
index
97d1236
..
735b97f
100644
(file)
--- a/
src/jalview/workers/ConsensusThread.java
+++ b/
src/jalview/workers/ConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConservationThread.java
b/src/jalview/workers/ConservationThread.java
index
a8bc268
..
cae430f
100644
(file)
--- a/
src/jalview/workers/ConservationThread.java
+++ b/
src/jalview/workers/ConservationThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/StrucConsensusThread.java
b/src/jalview/workers/StrucConsensusThread.java
index
9a8f2d8
..
1fc6d01
100644
(file)
--- a/
src/jalview/workers/StrucConsensusThread.java
+++ b/
src/jalview/workers/StrucConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
8a31587
..
37d064d
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWsJob.java
b/src/jalview/ws/AWsJob.java
index
71c021c
..
91f9644
100644
(file)
--- a/
src/jalview/ws/AWsJob.java
+++ b/
src/jalview/ws/AWsJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DBRefFetcher.java
b/src/jalview/ws/DBRefFetcher.java
index
84eba02
..
7b06a71
100644
(file)
--- a/
src/jalview/ws/DBRefFetcher.java
+++ b/
src/jalview/ws/DBRefFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DasSequenceFeatureFetcher.java
b/src/jalview/ws/DasSequenceFeatureFetcher.java
index
2d8617a
..
08070db
100644
(file)
--- a/
src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/ws/DasSequenceFeatureFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/EnfinEnvision2OneWay.java
b/src/jalview/ws/EnfinEnvision2OneWay.java
index
792f150
..
edc7fb7
100644
(file)
--- a/
src/jalview/ws/EnfinEnvision2OneWay.java
+++ b/
src/jalview/ws/EnfinEnvision2OneWay.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/JobStateSummary.java
b/src/jalview/ws/JobStateSummary.java
index
35fb0fc
..
dd68f93
100644
(file)
--- a/
src/jalview/ws/JobStateSummary.java
+++ b/
src/jalview/ws/JobStateSummary.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/SequenceFetcher.java
b/src/jalview/ws/SequenceFetcher.java
index
ce3e952
..
ecaa57a
100644
(file)
--- a/
src/jalview/ws/SequenceFetcher.java
+++ b/
src/jalview/ws/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClient.java
b/src/jalview/ws/WSClient.java
index
cfa81b8
..
c41a2f7
100755
(executable)
--- a/
src/jalview/ws/WSClient.java
+++ b/
src/jalview/ws/WSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClientI.java
b/src/jalview/ws/WSClientI.java
index
2c5d4a2
..
e2aa3c7
100755
(executable)
--- a/
src/jalview/ws/WSClientI.java
+++ b/
src/jalview/ws/WSClientI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSMenuEntryProviderI.java
b/src/jalview/ws/WSMenuEntryProviderI.java
index
2194144
..
0cfb238
100644
(file)
--- a/
src/jalview/ws/WSMenuEntryProviderI.java
+++ b/
src/jalview/ws/WSMenuEntryProviderI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index
bc29a2d
..
9e1a848
100644
(file)
--- a/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblCdsSouce.java
b/src/jalview/ws/dbsources/EmblCdsSouce.java
index
02e7f29
..
a317fa4
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/
src/jalview/ws/dbsources/EmblCdsSouce.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblSource.java
b/src/jalview/ws/dbsources/EmblSource.java
index
44427a5
..
5e54f1b
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblSource.java
+++ b/
src/jalview/ws/dbsources/EmblSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblXmlSource.java
b/src/jalview/ws/dbsources/EmblXmlSource.java
index
fe67b21
..
89d9f05
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/
src/jalview/ws/dbsources/EmblXmlSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/GeneDbSource.java
b/src/jalview/ws/dbsources/GeneDbSource.java
index
c8598db
..
77ff992
100644
(file)
--- a/
src/jalview/ws/dbsources/GeneDbSource.java
+++ b/
src/jalview/ws/dbsources/GeneDbSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
3dff679
..
af8676f
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
579a6fe
..
3f0ec11
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamFull.java
b/src/jalview/ws/dbsources/PfamFull.java
index
e9c525e
..
162f1fa
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamFull.java
+++ b/
src/jalview/ws/dbsources/PfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamSeed.java
b/src/jalview/ws/dbsources/PfamSeed.java
index
ab19f57
..
71667ed
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamSeed.java
+++ b/
src/jalview/ws/dbsources/PfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Rfam.java
b/src/jalview/ws/dbsources/Rfam.java
index
76f8b10
..
f5d77ab
100644
(file)
--- a/
src/jalview/ws/dbsources/Rfam.java
+++ b/
src/jalview/ws/dbsources/Rfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamFull.java
b/src/jalview/ws/dbsources/RfamFull.java
index
d61d0f3
..
1eb3215
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamFull.java
+++ b/
src/jalview/ws/dbsources/RfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamSeed.java
b/src/jalview/ws/dbsources/RfamSeed.java
index
2d69480
..
47ba60d
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamSeed.java
+++ b/
src/jalview/ws/dbsources/RfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
2abb605
..
1deb272
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/UnprotName.java
b/src/jalview/ws/dbsources/UnprotName.java
index
23e0e7a
..
c45357c
100644
(file)
--- a/
src/jalview/ws/dbsources/UnprotName.java
+++ b/
src/jalview/ws/dbsources/UnprotName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Xfam.java
b/src/jalview/ws/dbsources/Xfam.java
index
a8ea3a8
..
756ca1b
100644
(file)
--- a/
src/jalview/ws/dbsources/Xfam.java
+++ b/
src/jalview/ws/dbsources/Xfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
index
5e8f6a8
..
7bd5bca
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
+++ b/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
index
0f4a920
..
d23a128
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index
c677fdc
..
980dc81
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
index
52e8db5
..
04a1b60
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
index
daaf0ba
..
b48616b
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/ebi/EBIFetchClient.java
b/src/jalview/ws/ebi/EBIFetchClient.java
index
623a586
..
074b76c
100644
(file)
--- a/
src/jalview/ws/ebi/EBIFetchClient.java
+++ b/
src/jalview/ws/ebi/EBIFetchClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/HttpContentHandler.java
b/src/jalview/ws/io/mime/HttpContentHandler.java
index
7ceeaa9
..
72c858a
100644
(file)
--- a/
src/jalview/ws/io/mime/HttpContentHandler.java
+++ b/
src/jalview/ws/io/mime/HttpContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
index
44a1c96
..
1b5965c
100644
(file)
--- a/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/MimeTypes.java
b/src/jalview/ws/io/mime/MimeTypes.java
index
f2d8ad5
..
6c12b02
100644
(file)
--- a/
src/jalview/ws/io/mime/MimeTypes.java
+++ b/
src/jalview/ws/io/mime/MimeTypes.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/Discoverer.java
b/src/jalview/ws/jws1/Discoverer.java
index
900d2e7
..
48ee9af
100644
(file)
--- a/
src/jalview/ws/jws1/Discoverer.java
+++ b/
src/jalview/ws/jws1/Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredClient.java
b/src/jalview/ws/jws1/JPredClient.java
index
dccaf4a
..
4358fac
100644
(file)
--- a/
src/jalview/ws/jws1/JPredClient.java
+++ b/
src/jalview/ws/jws1/JPredClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredThread.java
b/src/jalview/ws/jws1/JPredThread.java
index
7fbe911
..
509e020
100644
(file)
--- a/
src/jalview/ws/jws1/JPredThread.java
+++ b/
src/jalview/ws/jws1/JPredThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JWS1Thread.java
b/src/jalview/ws/jws1/JWS1Thread.java
index
3797b53
..
4be4f83
100644
(file)
--- a/
src/jalview/ws/jws1/JWS1Thread.java
+++ b/
src/jalview/ws/jws1/JWS1Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSClient.java
b/src/jalview/ws/jws1/MsaWSClient.java
index
c6c6c8c
..
270b95c
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSClient.java
+++ b/
src/jalview/ws/jws1/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSThread.java
b/src/jalview/ws/jws1/MsaWSThread.java
index
a919d2d
..
168a808
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSThread.java
+++ b/
src/jalview/ws/jws1/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSClient.java
b/src/jalview/ws/jws1/SeqSearchWSClient.java
index
171c988
..
7d3976d
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSThread.java
b/src/jalview/ws/jws1/SeqSearchWSThread.java
index
2021798
..
108a586
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WS1Client.java
b/src/jalview/ws/jws1/WS1Client.java
index
ba03699
..
11e299a
100644
(file)
--- a/
src/jalview/ws/jws1/WS1Client.java
+++ b/
src/jalview/ws/jws1/WS1Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WSJob.java
b/src/jalview/ws/jws1/WSJob.java
index
ecc0dbc
..
e25f0a7
100644
(file)
--- a/
src/jalview/ws/jws1/WSJob.java
+++ b/
src/jalview/ws/jws1/WSJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AAConClient.java
b/src/jalview/ws/jws2/AAConClient.java
index
ee64c1f
..
aba9222
100644
(file)
--- a/
src/jalview/ws/jws2/AAConClient.java
+++ b/
src/jalview/ws/jws2/AAConClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AADisorderClient.java
b/src/jalview/ws/jws2/AADisorderClient.java
index
e158da7
..
e5a39a7
100644
(file)
--- a/
src/jalview/ws/jws2/AADisorderClient.java
+++ b/
src/jalview/ws/jws2/AADisorderClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AWS2Thread.java
b/src/jalview/ws/jws2/AWS2Thread.java
index
f1f6bfe
..
a98da76
100644
(file)
--- a/
src/jalview/ws/jws2/AWS2Thread.java
+++ b/
src/jalview/ws/jws2/AWS2Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JWs2Job.java
b/src/jalview/ws/jws2/JWs2Job.java
index
e33ccaa
..
23e131b
100644
(file)
--- a/
src/jalview/ws/jws2/JWs2Job.java
+++ b/
src/jalview/ws/jws2/JWs2Job.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaParamStore.java
b/src/jalview/ws/jws2/JabaParamStore.java
index
ed51f9a
..
7ce1115
100644
(file)
--- a/
src/jalview/ws/jws2/JabaParamStore.java
+++ b/
src/jalview/ws/jws2/JabaParamStore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaPreset.java
b/src/jalview/ws/jws2/JabaPreset.java
index
fd9bbb4
..
5df106d
100644
(file)
--- a/
src/jalview/ws/jws2/JabaPreset.java
+++ b/
src/jalview/ws/jws2/JabaPreset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaWsServerQuery.java
b/src/jalview/ws/jws2/JabaWsServerQuery.java
index
a82d1b6
..
7248d7c
100644
(file)
--- a/
src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/
src/jalview/ws/jws2/JabaWsServerQuery.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
index
0494d1f
..
6bfeddf
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsAlignCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsAlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Client.java
b/src/jalview/ws/jws2/Jws2Client.java
index
0a3db0d
..
fa43e7c
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Client.java
+++ b/
src/jalview/ws/jws2/Jws2Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Discoverer.java
b/src/jalview/ws/jws2/Jws2Discoverer.java
index
0782d57
..
66179a0
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/
src/jalview/ws/jws2/Jws2Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSClient.java
b/src/jalview/ws/jws2/MsaWSClient.java
index
278501f
..
7bc0ece
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSClient.java
+++ b/
src/jalview/ws/jws2/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSThread.java
b/src/jalview/ws/jws2/MsaWSThread.java
index
08accba
..
e5c3752
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSThread.java
+++ b/
src/jalview/ws/jws2/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/ParameterUtils.java
b/src/jalview/ws/jws2/ParameterUtils.java
index
1ecb3fb
..
be90458
100644
(file)
--- a/
src/jalview/ws/jws2/ParameterUtils.java
+++ b/
src/jalview/ws/jws2/ParameterUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
index
a590470
..
fb5f823
100644
(file)
--- a/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/AAConSettings.java
b/src/jalview/ws/jws2/dm/AAConSettings.java
index
49c8aa9
..
eff2128
100644
(file)
--- a/
src/jalview/ws/jws2/dm/AAConSettings.java
+++ b/
src/jalview/ws/jws2/dm/AAConSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaOption.java
b/src/jalview/ws/jws2/dm/JabaOption.java
index
a227f4f
..
f6202e1
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaOption.java
+++ b/
src/jalview/ws/jws2/dm/JabaOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaParameter.java
b/src/jalview/ws/jws2/dm/JabaParameter.java
index
2d6dda5
..
02cc167
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/
src/jalview/ws/jws2/dm/JabaParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
index
2367a85
..
dd07c9d
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
index
118e932
..
5cd93e6
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
index
0ac1df4
..
f21c29d
100644
(file)
--- a/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ArgumentI.java
b/src/jalview/ws/params/ArgumentI.java
index
05c8ce4
..
7d13d8b
100644
(file)
--- a/
src/jalview/ws/params/ArgumentI.java
+++ b/
src/jalview/ws/params/ArgumentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/AutoCalcSetting.java
b/src/jalview/ws/params/AutoCalcSetting.java
index
84a79b7
..
1a28326
100644
(file)
--- a/
src/jalview/ws/params/AutoCalcSetting.java
+++ b/
src/jalview/ws/params/AutoCalcSetting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/InvalidArgumentException.java
b/src/jalview/ws/params/InvalidArgumentException.java
index
8da77e0
..
ac5e135
100644
(file)
--- a/
src/jalview/ws/params/InvalidArgumentException.java
+++ b/
src/jalview/ws/params/InvalidArgumentException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/OptionI.java
b/src/jalview/ws/params/OptionI.java
index
12b5af8
..
2aca4b9
100644
(file)
--- a/
src/jalview/ws/params/OptionI.java
+++ b/
src/jalview/ws/params/OptionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamDatastoreI.java
b/src/jalview/ws/params/ParamDatastoreI.java
index
247bfe2
..
3074ad4
100644
(file)
--- a/
src/jalview/ws/params/ParamDatastoreI.java
+++ b/
src/jalview/ws/params/ParamDatastoreI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamManager.java
b/src/jalview/ws/params/ParamManager.java
index
d37dd88
..
e067228
100644
(file)
--- a/
src/jalview/ws/params/ParamManager.java
+++ b/
src/jalview/ws/params/ParamManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParameterI.java
b/src/jalview/ws/params/ParameterI.java
index
d3d3c35
..
678047c
100644
(file)
--- a/
src/jalview/ws/params/ParameterI.java
+++ b/
src/jalview/ws/params/ParameterI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ValueConstrainI.java
b/src/jalview/ws/params/ValueConstrainI.java
index
5c8b139
..
ed4080b
100644
(file)
--- a/
src/jalview/ws/params/ValueConstrainI.java
+++ b/
src/jalview/ws/params/ValueConstrainI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/WsParamSetI.java
b/src/jalview/ws/params/WsParamSetI.java
index
efccbd4
..
c1be913
100644
(file)
--- a/
src/jalview/ws/params/WsParamSetI.java
+++ b/
src/jalview/ws/params/WsParamSetI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/BooleanOption.java
b/src/jalview/ws/params/simple/BooleanOption.java
index
cbb1233
..
d4076ff
100644
(file)
--- a/
src/jalview/ws/params/simple/BooleanOption.java
+++ b/
src/jalview/ws/params/simple/BooleanOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/IntegerParameter.java
b/src/jalview/ws/params/simple/IntegerParameter.java
index
3464ced
..
94a054b
100644
(file)
--- a/
src/jalview/ws/params/simple/IntegerParameter.java
+++ b/
src/jalview/ws/params/simple/IntegerParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Option.java
b/src/jalview/ws/params/simple/Option.java
index
aebf384
..
0ce9f09
100644
(file)
--- a/
src/jalview/ws/params/simple/Option.java
+++ b/
src/jalview/ws/params/simple/Option.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Parameter.java
b/src/jalview/ws/params/simple/Parameter.java
index
9d7c74f
..
40bf6fa
100644
(file)
--- a/
src/jalview/ws/params/simple/Parameter.java
+++ b/
src/jalview/ws/params/simple/Parameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/StringChoiceParameter.java
b/src/jalview/ws/params/simple/StringChoiceParameter.java
index
4396403
..
3f3a3cf
100644
(file)
--- a/
src/jalview/ws/params/simple/StringChoiceParameter.java
+++ b/
src/jalview/ws/params/simple/StringChoiceParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/AlignmentProcessor.java
b/src/jalview/ws/rest/AlignmentProcessor.java
index
eabbd2f
..
df7573b
100644
(file)
--- a/
src/jalview/ws/rest/AlignmentProcessor.java
+++ b/
src/jalview/ws/rest/AlignmentProcessor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/HttpResultSet.java
b/src/jalview/ws/rest/HttpResultSet.java
index
ed77736
..
3654620
100644
(file)
--- a/
src/jalview/ws/rest/HttpResultSet.java
+++ b/
src/jalview/ws/rest/HttpResultSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/InputType.java
b/src/jalview/ws/rest/InputType.java
index
2047632
..
a0ef868
100644
(file)
--- a/
src/jalview/ws/rest/InputType.java
+++ b/
src/jalview/ws/rest/InputType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/NoValidInputDataException.java
b/src/jalview/ws/rest/NoValidInputDataException.java
index
1e0fd0c
..
a332c40
100644
(file)
--- a/
src/jalview/ws/rest/NoValidInputDataException.java
+++ b/
src/jalview/ws/rest/NoValidInputDataException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestClient.java
b/src/jalview/ws/rest/RestClient.java
index
046871e
..
ceb2809
100644
(file)
--- a/
src/jalview/ws/rest/RestClient.java
+++ b/
src/jalview/ws/rest/RestClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJob.java
b/src/jalview/ws/rest/RestJob.java
index
7bd9f49
..
d41cfc0
100644
(file)
--- a/
src/jalview/ws/rest/RestJob.java
+++ b/
src/jalview/ws/rest/RestJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJobThread.java
b/src/jalview/ws/rest/RestJobThread.java
index
5000fdc
..
2aa071d
100644
(file)
--- a/
src/jalview/ws/rest/RestJobThread.java
+++ b/
src/jalview/ws/rest/RestJobThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestServiceDescription.java
b/src/jalview/ws/rest/RestServiceDescription.java
index
aae2255
..
02c0bbf
100644
(file)
--- a/
src/jalview/ws/rest/RestServiceDescription.java
+++ b/
src/jalview/ws/rest/RestServiceDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Alignment.java
b/src/jalview/ws/rest/params/Alignment.java
index
f78788b
..
d6af1c4
100644
(file)
--- a/
src/jalview/ws/rest/params/Alignment.java
+++ b/
src/jalview/ws/rest/params/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/AnnotationFile.java
b/src/jalview/ws/rest/params/AnnotationFile.java
index
ed9383e
..
9aeeb9a
100644
(file)
--- a/
src/jalview/ws/rest/params/AnnotationFile.java
+++ b/
src/jalview/ws/rest/params/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/JobConstant.java
b/src/jalview/ws/rest/params/JobConstant.java
index
b975fe4
..
968011c
100644
(file)
--- a/
src/jalview/ws/rest/params/JobConstant.java
+++ b/
src/jalview/ws/rest/params/JobConstant.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index
124c789
..
87a1d9a
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqIdVector.java
b/src/jalview/ws/rest/params/SeqIdVector.java
index
b3bffa2
..
05acb23
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqIdVector.java
+++ b/
src/jalview/ws/rest/params/SeqIdVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqVector.java
b/src/jalview/ws/rest/params/SeqVector.java
index
6e1563a
..
8dd5dfd
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqVector.java
+++ b/
src/jalview/ws/rest/params/SeqVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Tree.java
b/src/jalview/ws/rest/params/Tree.java
index
3487cb4
..
db4ce8b
100644
(file)
--- a/
src/jalview/ws/rest/params/Tree.java
+++ b/
src/jalview/ws/rest/params/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index
cf60b63
..
8b63184
100644
(file)
--- a/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxy.java
b/src/jalview/ws/seqfetcher/DbSourceProxy.java
index
af72f16
..
3a50fb5
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
index
da7e09a
..
bdd21fd
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference.java
b/src/uk/ac/ebi/picr/model/CrossReference.java
index
ca6d66d
..
2469db5
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
index
7ea0783
..
65a1092
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry.java
b/src/uk/ac/ebi/picr/model/UPEntry.java
index
5bfa02c
..
8a82575
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
index
59e1012
..
54da470
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/Data.java
b/src/uk/ac/ebi/www/Data.java
index
ad6b546
..
29206cc
100755
(executable)
--- a/
src/uk/ac/ebi/www/Data.java
+++ b/
src/uk/ac/ebi/www/Data.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/InputParams.java
b/src/uk/ac/ebi/www/InputParams.java
index
bbaf521
..
a6a57f5
100755
(executable)
--- a/
src/uk/ac/ebi/www/InputParams.java
+++ b/
src/uk/ac/ebi/www/InputParams.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSFile.java
b/src/uk/ac/ebi/www/WSFile.java
index
e22c43f
..
1cb0841
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSFile.java
+++ b/
src/uk/ac/ebi/www/WSFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlast.java
b/src/uk/ac/ebi/www/WSWUBlast.java
index
32a6073
..
9b891a8
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlast.java
+++ b/
src/uk/ac/ebi/www/WSWUBlast.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastService.java
b/src/uk/ac/ebi/www/WSWUBlastService.java
index
ee7f068
..
5bb0475
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
index
dd53a7e
..
5e5ba13
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
index
69005fb
..
5059842
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index
d3e19d5
..
235508b
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
index
9b9ddff
..
b199ee8
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
index
7386401
..
02ea047
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
index
dda7ade
..
1336c78
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/IMsaWS.java
b/src/vamsas/IMsaWS.java
index
7438a34
..
9c05ef5
100755
(executable)
--- a/
src/vamsas/IMsaWS.java
+++ b/
src/vamsas/IMsaWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment.java
b/src/vamsas/objects/simple/Alignment.java
index
b875b56
..
e03b768
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment.java
+++ b/
src/vamsas/objects/simple/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment_Helper.java
b/src/vamsas/objects/simple/Alignment_Helper.java
index
b3e820d
..
0c9e127
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment_Helper.java
+++ b/
src/vamsas/objects/simple/Alignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult.java
b/src/vamsas/objects/simple/JpredResult.java
index
12e05da
..
a6f3877
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult.java
+++ b/
src/vamsas/objects/simple/JpredResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult_Helper.java
b/src/vamsas/objects/simple/JpredResult_Helper.java
index
1244535
..
b2baf3f
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/
src/vamsas/objects/simple/JpredResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult.java
b/src/vamsas/objects/simple/MsaResult.java
index
be3214a
..
939c4c4
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult.java
+++ b/
src/vamsas/objects/simple/MsaResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult_Helper.java
b/src/vamsas/objects/simple/MsaResult_Helper.java
index
fb9fd2c
..
c9f5ea1
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/
src/vamsas/objects/simple/MsaResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment.java
b/src/vamsas/objects/simple/Msfalignment.java
index
ba18a9a
..
5aaf0db
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment.java
+++ b/
src/vamsas/objects/simple/Msfalignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment_Helper.java
b/src/vamsas/objects/simple/Msfalignment_Helper.java
index
66ed53b
..
c50c5be
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/
src/vamsas/objects/simple/Msfalignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object.java
b/src/vamsas/objects/simple/Object.java
index
77eceb0
..
5e491d6
100755
(executable)
--- a/
src/vamsas/objects/simple/Object.java
+++ b/
src/vamsas/objects/simple/Object.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object_Helper.java
b/src/vamsas/objects/simple/Object_Helper.java
index
2755f3f
..
a45718b
100755
(executable)
--- a/
src/vamsas/objects/simple/Object_Helper.java
+++ b/
src/vamsas/objects/simple/Object_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result.java
b/src/vamsas/objects/simple/Result.java
index
60ede6f
..
d0ac976
100755
(executable)
--- a/
src/vamsas/objects/simple/Result.java
+++ b/
src/vamsas/objects/simple/Result.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result_Helper.java
b/src/vamsas/objects/simple/Result_Helper.java
index
4c2d744
..
d2d4960
100755
(executable)
--- a/
src/vamsas/objects/simple/Result_Helper.java
+++ b/
src/vamsas/objects/simple/Result_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred.java
b/src/vamsas/objects/simple/Secstructpred.java
index
ea335df
..
1a14efb
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred.java
+++ b/
src/vamsas/objects/simple/Secstructpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred_Helper.java
b/src/vamsas/objects/simple/Secstructpred_Helper.java
index
a085900
..
b7f059b
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/
src/vamsas/objects/simple/Secstructpred_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult.java
b/src/vamsas/objects/simple/SeqSearchResult.java
index
6673fff
..
058830d
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
index
8328383
..
7076c33
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence.java
b/src/vamsas/objects/simple/Sequence.java
index
04122cd
..
2f6d742
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence.java
+++ b/
src/vamsas/objects/simple/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet.java
b/src/vamsas/objects/simple/SequenceSet.java
index
e8865da
..
9aaca58
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet.java
+++ b/
src/vamsas/objects/simple/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet_Helper.java
b/src/vamsas/objects/simple/SequenceSet_Helper.java
index
1c820e4
..
181be98
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/
src/vamsas/objects/simple/SequenceSet_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence_Helper.java
b/src/vamsas/objects/simple/Sequence_Helper.java
index
43c444c
..
9f56351
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence_Helper.java
+++ b/
src/vamsas/objects/simple/Sequence_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId.java
b/src/vamsas/objects/simple/WsJobId.java
index
14f34ba
..
476df91
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId.java
+++ b/
src/vamsas/objects/simple/WsJobId.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId_Helper.java
b/src/vamsas/objects/simple/WsJobId_Helper.java
index
2521c4b
..
5d9f216
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/
src/vamsas/objects/simple/WsJobId_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/DnaTranslation.java
b/test/jalview/analysis/DnaTranslation.java
index
a26495c
..
da2fac4
100644
(file)
--- a/
test/jalview/analysis/DnaTranslation.java
+++ b/
test/jalview/analysis/DnaTranslation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/InstallAnywhere/jalview_buildinstaller.xml
b/utils/InstallAnywhere/jalview_buildinstaller.xml
index
1873087
..
ee21e74
100644
(file)
--- a/
utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/
utils/InstallAnywhere/jalview_buildinstaller.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/eclipse/JalviewCodeStyle.xml
b/utils/eclipse/JalviewCodeStyle.xml
index
c778599
..
a73f116
100644
(file)
--- a/
utils/eclipse/JalviewCodeStyle.xml
+++ b/
utils/eclipse/JalviewCodeStyle.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/getJavaVersion.java
b/utils/getJavaVersion.java
index
6bec144
..
f3b12d4
100644
(file)
--- a/
utils/getJavaVersion.java
+++ b/
utils/getJavaVersion.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/gff2annot.pl
b/utils/gff2annot.pl
index
73d5579
..
6d90f70
100755
(executable)
--- a/
utils/gff2annot.pl
+++ b/
utils/gff2annot.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/help2Website.java
b/utils/help2Website.java
index
875d5b9
..
e2e79ac
100755
(executable)
--- a/
utils/help2Website.java
+++ b/
utils/help2Website.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/acknowledge.html
b/utils/jalopy/docs/acknowledge.html
index
6fc8a5d
..
71ff9e4
100755
(executable)
--- a/
utils/jalopy/docs/acknowledge.html
+++ b/
utils/jalopy/docs/acknowledge.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/bi01.html
b/utils/jalopy/docs/bi01.html
index
eca896a
..
24a6ec4
100755
(executable)
--- a/
utils/jalopy/docs/bi01.html
+++ b/
utils/jalopy/docs/bi01.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/build.html
b/utils/jalopy/docs/build.html
index
d5418b4
..
b4bc167
100755
(executable)
--- a/
utils/jalopy/docs/build.html
+++ b/
utils/jalopy/docs/build.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/comments.html
b/utils/jalopy/docs/comments.html
index
8554aa8
..
5eceab4
100755
(executable)
--- a/
utils/jalopy/docs/comments.html
+++ b/
utils/jalopy/docs/comments.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/contact.html
b/utils/jalopy/docs/contact.html
index
c2fa66f
..
38afa69
100755
(executable)
--- a/
utils/jalopy/docs/contact.html
+++ b/
utils/jalopy/docs/contact.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/contributors.html
b/utils/jalopy/docs/contributors.html
index
f0a376a
..
75d4324
100755
(executable)
--- a/
utils/jalopy/docs/contributors.html
+++ b/
utils/jalopy/docs/contributors.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/dedication.html
b/utils/jalopy/docs/dedication.html
index
8d1440f
..
662188e
100755
(executable)
--- a/
utils/jalopy/docs/dedication.html
+++ b/
utils/jalopy/docs/dedication.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/dependencies.html
b/utils/jalopy/docs/dependencies.html
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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-console-usage.html
b/utils/jalopy/docs/plugin-console-usage.html
index
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..
f8c0722
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(executable)
--- a/
utils/jalopy/docs/plugin-console-usage.html
+++ b/
utils/jalopy/docs/plugin-console-usage.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-console.html
b/utils/jalopy/docs/plugin-console.html
index
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..
f8275cb
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(executable)
--- a/
utils/jalopy/docs/plugin-console.html
+++ b/
utils/jalopy/docs/plugin-console.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-eclipse-integration.html
b/utils/jalopy/docs/plugin-eclipse-integration.html
index
964ad32
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d7e3a18
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(executable)
--- a/
utils/jalopy/docs/plugin-eclipse-integration.html
+++ b/
utils/jalopy/docs/plugin-eclipse-integration.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-eclipse-license.html
b/utils/jalopy/docs/plugin-eclipse-license.html
index
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..
8c5676e
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(executable)
--- a/
utils/jalopy/docs/plugin-eclipse-license.html
+++ b/
utils/jalopy/docs/plugin-eclipse-license.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-eclipse.html
b/utils/jalopy/docs/plugin-eclipse.html
index
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..
8ef0d4e
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(executable)
--- a/
utils/jalopy/docs/plugin-eclipse.html
+++ b/
utils/jalopy/docs/plugin-eclipse.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jbuilder-integration.html
b/utils/jalopy/docs/plugin-jbuilder-integration.html
index
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..
0fca529
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(executable)
--- a/
utils/jalopy/docs/plugin-jbuilder-integration.html
+++ b/
utils/jalopy/docs/plugin-jbuilder-integration.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jbuilder-license.html
b/utils/jalopy/docs/plugin-jbuilder-license.html
index
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..
24771fa
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(executable)
--- a/
utils/jalopy/docs/plugin-jbuilder-license.html
+++ b/
utils/jalopy/docs/plugin-jbuilder-license.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jbuilder.html
b/utils/jalopy/docs/plugin-jbuilder.html
index
91847e8
..
ad854be
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(executable)
--- a/
utils/jalopy/docs/plugin-jbuilder.html
+++ b/
utils/jalopy/docs/plugin-jbuilder.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jdev-integration.html
b/utils/jalopy/docs/plugin-jdev-integration.html
index
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5708a8a
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(executable)
--- a/
utils/jalopy/docs/plugin-jdev-integration.html
+++ b/
utils/jalopy/docs/plugin-jdev-integration.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jdev-license.html
b/utils/jalopy/docs/plugin-jdev-license.html
index
0d7b467
..
acaa975
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(executable)
--- a/
utils/jalopy/docs/plugin-jdev-license.html
+++ b/
utils/jalopy/docs/plugin-jdev-license.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jdev.html
b/utils/jalopy/docs/plugin-jdev.html
index
b111757
..
aece616
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(executable)
--- a/
utils/jalopy/docs/plugin-jdev.html
+++ b/
utils/jalopy/docs/plugin-jdev.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jedit-integration.html
b/utils/jalopy/docs/plugin-jedit-integration.html
index
b5083ae
..
91bb923
100755
(executable)
--- a/
utils/jalopy/docs/plugin-jedit-integration.html
+++ b/
utils/jalopy/docs/plugin-jedit-integration.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jedit-license.html
b/utils/jalopy/docs/plugin-jedit-license.html
index
1ca9201
..
a376cdb
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(executable)
--- a/
utils/jalopy/docs/plugin-jedit-license.html
+++ b/
utils/jalopy/docs/plugin-jedit-license.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-jedit.html
b/utils/jalopy/docs/plugin-jedit.html
index
31e08be
..
ced3833
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(executable)
--- a/
utils/jalopy/docs/plugin-jedit.html
+++ b/
utils/jalopy/docs/plugin-jedit.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans-integration.html
b/utils/jalopy/docs/plugin-netbeans-integration.html
index
9dc4da0
..
983270d
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(executable)
--- a/
utils/jalopy/docs/plugin-netbeans-integration.html
+++ b/
utils/jalopy/docs/plugin-netbeans-integration.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans-license.html
b/utils/jalopy/docs/plugin-netbeans-license.html
index
4224ce7
..
c0a0c5a
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(executable)
--- a/
utils/jalopy/docs/plugin-netbeans-license.html
+++ b/
utils/jalopy/docs/plugin-netbeans-license.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugin-netbeans.html
b/utils/jalopy/docs/plugin-netbeans.html
index
41b8db2
..
e653198
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(executable)
--- a/
utils/jalopy/docs/plugin-netbeans.html
+++ b/
utils/jalopy/docs/plugin-netbeans.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/plugins.html
b/utils/jalopy/docs/plugins.html
index
5051318
..
7aae9b8
100755
(executable)
--- a/
utils/jalopy/docs/plugins.html
+++ b/
utils/jalopy/docs/plugins.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/printer.html
b/utils/jalopy/docs/printer.html
index
e43d274
..
15f5c78
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(executable)
--- a/
utils/jalopy/docs/printer.html
+++ b/
utils/jalopy/docs/printer.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/project.html
b/utils/jalopy/docs/project.html
index
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(executable)
--- a/
utils/jalopy/docs/project.html
+++ b/
utils/jalopy/docs/project.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/separation.html
b/utils/jalopy/docs/separation.html
index
3eb56f2
..
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(executable)
--- a/
utils/jalopy/docs/separation.html
+++ b/
utils/jalopy/docs/separation.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/settings.html
b/utils/jalopy/docs/settings.html
index
64d7e2d
..
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(executable)
--- a/
utils/jalopy/docs/settings.html
+++ b/
utils/jalopy/docs/settings.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/site.css
b/utils/jalopy/docs/site.css
index
c5adfa8
..
9dffb8e
100755
(executable)
--- a/
utils/jalopy/docs/site.css
+++ b/
utils/jalopy/docs/site.css
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/jalopy/docs/sorting.html
b/utils/jalopy/docs/sorting.html
index
be41bda
..
50d93d1
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(executable)
--- a/
utils/jalopy/docs/sorting.html
+++ b/
utils/jalopy/docs/sorting.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/usage.html
b/utils/jalopy/docs/usage.html
index
32e8ebf
..
dfa82d3
100755
(executable)
--- a/
utils/jalopy/docs/usage.html
+++ b/
utils/jalopy/docs/usage.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/whitespace.html
b/utils/jalopy/docs/whitespace.html
index
2ceb9ee
..
81dfe99
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(executable)
--- a/
utils/jalopy/docs/whitespace.html
+++ b/
utils/jalopy/docs/whitespace.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/docs/wrapping.html
b/utils/jalopy/docs/wrapping.html
index
453d3c4
..
e5dccad
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(executable)
--- a/
utils/jalopy/docs/wrapping.html
+++ b/
utils/jalopy/docs/wrapping.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jalopy/readme.html
b/utils/jalopy/readme.html
index
f8912d7
..
3182984
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(executable)
--- a/
utils/jalopy/readme.html
+++ b/
utils/jalopy/readme.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jarunsigner.pl
b/utils/jarunsigner.pl
index
36ecb87
..
f8a810b
100755
(executable)
--- a/
utils/jarunsigner.pl
+++ b/
utils/jarunsigner.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/patchGt.pl
b/utils/patchGt.pl
index
ff3e621
..
bc9d2da
100644
(file)
--- a/
utils/patchGt.pl
+++ b/
utils/patchGt.pl
@@
-1,6
+1,6
@@
#!/bin/perl
##
#!/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/splitstockholm.pl
b/utils/splitstockholm.pl
index
0b698c5
..
9654057
100644
(file)
--- a/
utils/splitstockholm.pl
+++ b/
utils/splitstockholm.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.