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JAL-1620 version bump and release notes
author
Jim Procter
<jprocter@dundee.ac.uk>
Mon, 15 Dec 2014 06:34:15 +0000
(06:34 +0000)
committer
Jim Procter
<jprocter@dundee.ac.uk>
Mon, 15 Dec 2014 06:34:15 +0000
(06:34 +0000)
836 files changed:
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diff --git
a/README
b/README
index
10f032b
..
cbc93b1
100755
(executable)
--- a/
README
+++ b/
README
@@
-4,7
+4,7
@@
Jalview Readme
The source is available as a tar file and comes complete with the GNU General Public License.
The source is available as a tar file and comes complete with the GNU General Public License.
-To build the application you will need a J2SDK 1.6+.
+To build the application you will need a J2SDK 1.7+.
An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
Run ant to view usage which will display a list of useful build targets.
An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
Run ant to view usage which will display a list of useful build targets.
diff --git
a/RELEASE
b/RELEASE
index
11598ab
..
72e42f6
100644
(file)
--- a/
RELEASE
+++ b/
RELEASE
@@
-1,2
+1,2
@@
-jalview.release=Release_2_8_2_Branch
-jalview.version=2.8.2
+jalview.release=Release_2_8_2b1_Branch
+jalview.version=2.8.2b1
diff --git
a/build.xml
b/build.xml
index
d8ebe1e
..
baadc25
100755
(executable)
--- a/
build.xml
+++ b/
build.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/AddingGroovySupport.html
b/doc/AddingGroovySupport.html
index
0cb58c6
..
41c1be5
100644
(file)
--- a/
doc/AddingGroovySupport.html
+++ b/
doc/AddingGroovySupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/JalviewRNASupport.html
b/doc/JalviewRNASupport.html
index
23124f4
..
2dcff2c
100644
(file)
--- a/
doc/JalviewRNASupport.html
+++ b/
doc/JalviewRNASupport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/building.html
b/doc/building.html
index
59f4dc3
..
f8bd96c
100755
(executable)
--- a/
doc/building.html
+++ b/
doc/building.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/developing.html
b/doc/developing.html
index
0e73294
..
4193184
100644
(file)
--- a/
doc/developing.html
+++ b/
doc/developing.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/index.html
b/doc/index.html
index
c551491
..
d9d811d
100644
(file)
--- a/
doc/index.html
+++ b/
doc/index.html
@@
-1,6
+1,6
@@
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
<!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/doc/newdmobj.html
b/doc/newdmobj.html
index
d77fc97
..
2a3cf33
100644
(file)
--- a/
doc/newdmobj.html
+++ b/
doc/newdmobj.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/ie6.css
b/examples-jbake/assets/css/ie6.css
index
11c7f65
..
88ab0b2
100644
(file)
--- a/
examples-jbake/assets/css/ie6.css
+++ b/
examples-jbake/assets/css/ie6.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/ie7.css
b/examples-jbake/assets/css/ie7.css
index
27a3f0d
..
2448046
100644
(file)
--- a/
examples-jbake/assets/css/ie7.css
+++ b/
examples-jbake/assets/css/ie7.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/reset.css
b/examples-jbake/assets/css/reset.css
index
71df1ed
..
37d05af
100644
(file)
--- a/
examples-jbake/assets/css/reset.css
+++ b/
examples-jbake/assets/css/reset.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/css/style.css
b/examples-jbake/assets/css/style.css
index
61a39e9
..
3c06e5e
100644
(file)
--- a/
examples-jbake/assets/css/style.css
+++ b/
examples-jbake/assets/css/style.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/assets/exampleFeatures.txt
b/examples-jbake/assets/exampleFeatures.txt
index
85fd06f
..
0e429e4
100755
(executable)
--- a/
examples-jbake/assets/exampleFeatures.txt
+++ b/
examples-jbake/assets/exampleFeatures.txt
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/examples-jbake/assets/javascript/jalview.js
b/examples-jbake/assets/javascript/jalview.js
index
7890854
..
9196b4a
100644
(file)
--- a/
examples-jbake/assets/javascript/jalview.js
+++ b/
examples-jbake/assets/javascript/jalview.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples-jbake/templates/header.ftl
b/examples-jbake/templates/header.ftl
index
b0daf29
..
967c284
100644
(file)
--- a/
examples-jbake/templates/header.ftl
+++ b/
examples-jbake/templates/header.ftl
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/appletParameters.html
b/examples/appletParameters.html
index
2f34c46
..
b9af1df
100644
(file)
--- a/
examples/appletParameters.html
+++ b/
examples/appletParameters.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/applets.html
b/examples/applets.html
index
cc85e86
..
e48a6b5
100755
(executable)
--- a/
examples/applets.html
+++ b/
examples/applets.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie6.css
b/examples/css/ie6.css
index
11c7f65
..
88ab0b2
100644
(file)
--- a/
examples/css/ie6.css
+++ b/
examples/css/ie6.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/ie7.css
b/examples/css/ie7.css
index
27a3f0d
..
2448046
100644
(file)
--- a/
examples/css/ie7.css
+++ b/
examples/css/ie7.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/reset.css
b/examples/css/reset.css
index
71df1ed
..
37d05af
100644
(file)
--- a/
examples/css/reset.css
+++ b/
examples/css/reset.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/css/style.css
b/examples/css/style.css
index
61a39e9
..
3c06e5e
100644
(file)
--- a/
examples/css/style.css
+++ b/
examples/css/style.css
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/embedded.html
b/examples/embedded.html
index
a14dd75
..
b93910c
100644
(file)
--- a/
examples/embedded.html
+++ b/
examples/embedded.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/embeddedWJmol.html
b/examples/embeddedWJmol.html
index
f482ebe
..
d4aed43
100644
(file)
--- a/
examples/embeddedWJmol.html
+++ b/
examples/embeddedWJmol.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/exampleFeatures.txt
b/examples/exampleFeatures.txt
index
85fd06f
..
0e429e4
100755
(executable)
--- a/
examples/exampleFeatures.txt
+++ b/
examples/exampleFeatures.txt
@@
-1,5
+1,5
@@
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/examples/formComplete.html
b/examples/formComplete.html
index
b37c65e
..
91c7ac6
100644
(file)
--- a/
examples/formComplete.html
+++ b/
examples/formComplete.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/jalviewLiteJs.html
b/examples/jalviewLiteJs.html
index
891e46e
..
3086d3b
100644
(file)
--- a/
examples/jalviewLiteJs.html
+++ b/
examples/jalviewLiteJs.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascript/jalview.js
b/examples/javascript/jalview.js
index
7890854
..
9196b4a
100644
(file)
--- a/
examples/javascript/jalview.js
+++ b/
examples/javascript/jalview.js
@@
-1,5
+1,5
@@
/**
/**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/javascriptLaunch.html
b/examples/javascriptLaunch.html
index
4a9abfe
..
04ecaa3
100644
(file)
--- a/
examples/javascriptLaunch.html
+++ b/
examples/javascriptLaunch.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/linkedapplets_ng.html
b/examples/linkedapplets_ng.html
index
9c88710
..
ac35f1b
100644
(file)
--- a/
examples/linkedapplets_ng.html
+++ b/
examples/linkedapplets_ng.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_applets.html
b/examples/u_applets.html
index
9402c43
..
a81f905
100644
(file)
--- a/
examples/u_applets.html
+++ b/
examples/u_applets.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_embedded.html
b/examples/u_embedded.html
index
8821474
..
6821c8a
100644
(file)
--- a/
examples/u_embedded.html
+++ b/
examples/u_embedded.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_embeddedWJmol.html
b/examples/u_embeddedWJmol.html
index
1d2e03b
..
2d3730a
100644
(file)
--- a/
examples/u_embeddedWJmol.html
+++ b/
examples/u_embeddedWJmol.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_formComplete.html
b/examples/u_formComplete.html
index
005e29a
..
0d99867
100644
(file)
--- a/
examples/u_formComplete.html
+++ b/
examples/u_formComplete.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_javascriptLaunch.html
b/examples/u_javascriptLaunch.html
index
1ed627b
..
e6ee24b
100644
(file)
--- a/
examples/u_javascriptLaunch.html
+++ b/
examples/u_javascriptLaunch.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/examples/u_linkedapplets_ng.html
b/examples/u_linkedapplets_ng.html
index
78a1366
..
5d380d0
100644
(file)
--- a/
examples/u_linkedapplets_ng.html
+++ b/
examples/u_linkedapplets_ng.html
@@
-1,6
+1,6
@@
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/help.hs
b/help/help.hs
index
eba1dd9
..
567b054
100755
(executable)
--- a/
help/help.hs
+++ b/
help/help.hs
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/help.jhm
b/help/help.jhm
index
af010a4
..
ad931c8
100755
(executable)
--- a/
help/help.jhm
+++ b/
help/help.jhm
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/helpTOC.xml
b/help/helpTOC.xml
index
b67eb6f
..
d8fd945
100755
(executable)
--- a/
help/helpTOC.xml
+++ b/
help/helpTOC.xml
@@
-1,5
+1,5
@@
<?xml version="1.0" encoding="ISO-8859-1" ?>
<?xml version="1.0" encoding="ISO-8859-1" ?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) *
+<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) *
Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview.
* * Jalview is free software: you can redistribute it and/or * modify it
under the terms of the GNU General Public License * as published by the Free
Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview.
* * Jalview is free software: you can redistribute it and/or * modify it
under the terms of the GNU General Public License * as published by the Free
diff --git
a/help/html/calculations/consensus.html
b/help/html/calculations/consensus.html
index
d5ce720
..
7c56611
100644
(file)
--- a/
help/html/calculations/consensus.html
+++ b/
help/html/calculations/consensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/conservation.html
b/help/html/calculations/conservation.html
index
d38924a
..
ca40dd2
100755
(executable)
--- a/
help/html/calculations/conservation.html
+++ b/
help/html/calculations/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pairwise.html
b/help/html/calculations/pairwise.html
index
2891f1e
..
586f880
100755
(executable)
--- a/
help/html/calculations/pairwise.html
+++ b/
help/html/calculations/pairwise.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/pca.html
b/help/html/calculations/pca.html
index
66dbabd
..
7b7b935
100755
(executable)
--- a/
help/html/calculations/pca.html
+++ b/
help/html/calculations/pca.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/quality.html
b/help/html/calculations/quality.html
index
cab1ea8
..
a16193a
100755
(executable)
--- a/
help/html/calculations/quality.html
+++ b/
help/html/calculations/quality.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/recoverInputdata.html
b/help/html/calculations/recoverInputdata.html
index
28d40c9
..
32f492b
100644
(file)
--- a/
help/html/calculations/recoverInputdata.html
+++ b/
help/html/calculations/recoverInputdata.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/redundancy.html
b/help/html/calculations/redundancy.html
index
ccc8457
..
b43afea
100755
(executable)
--- a/
help/html/calculations/redundancy.html
+++ b/
help/html/calculations/redundancy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/scorematrices.html
b/help/html/calculations/scorematrices.html
index
5c4a498
..
cb07a49
100644
(file)
--- a/
help/html/calculations/scorematrices.html
+++ b/
help/html/calculations/scorematrices.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/sorting.html
b/help/html/calculations/sorting.html
index
d12a518
..
af37b83
100755
(executable)
--- a/
help/html/calculations/sorting.html
+++ b/
help/html/calculations/sorting.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/structureconsensus.html
b/help/html/calculations/structureconsensus.html
index
6e797b1
..
ccc249f
100755
(executable)
--- a/
help/html/calculations/structureconsensus.html
+++ b/
help/html/calculations/structureconsensus.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/tree.html
b/help/html/calculations/tree.html
index
a01c7be
..
b5f574b
100755
(executable)
--- a/
help/html/calculations/tree.html
+++ b/
help/html/calculations/tree.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/calculations/treeviewer.html
b/help/html/calculations/treeviewer.html
index
0205ddd
..
91dfddb
100755
(executable)
--- a/
help/html/calculations/treeviewer.html
+++ b/
help/html/calculations/treeviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/abovePID.html
b/help/html/colourSchemes/abovePID.html
index
74dd665
..
bdcd65e
100755
(executable)
--- a/
help/html/colourSchemes/abovePID.html
+++ b/
help/html/colourSchemes/abovePID.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/annotationColouring.html
b/help/html/colourSchemes/annotationColouring.html
index
5100c6b
..
55e04c3
100755
(executable)
--- a/
help/html/colourSchemes/annotationColouring.html
+++ b/
help/html/colourSchemes/annotationColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/blosum.html
b/help/html/colourSchemes/blosum.html
index
338ca55
..
f9108b6
100755
(executable)
--- a/
help/html/colourSchemes/blosum.html
+++ b/
help/html/colourSchemes/blosum.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/buried.html
b/help/html/colourSchemes/buried.html
index
5943d36
..
c96df03
100755
(executable)
--- a/
help/html/colourSchemes/buried.html
+++ b/
help/html/colourSchemes/buried.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/clustal.html
b/help/html/colourSchemes/clustal.html
index
33455dc
..
195171e
100755
(executable)
--- a/
help/html/colourSchemes/clustal.html
+++ b/
help/html/colourSchemes/clustal.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/conservation.html
b/help/html/colourSchemes/conservation.html
index
5ceba85
..
7ad14f8
100755
(executable)
--- a/
help/html/colourSchemes/conservation.html
+++ b/
help/html/colourSchemes/conservation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/helix.html
b/help/html/colourSchemes/helix.html
index
8c698c0
..
0ad6f13
100755
(executable)
--- a/
help/html/colourSchemes/helix.html
+++ b/
help/html/colourSchemes/helix.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/hydrophobic.html
b/help/html/colourSchemes/hydrophobic.html
index
6b4cf2d
..
c8e7b53
100755
(executable)
--- a/
help/html/colourSchemes/hydrophobic.html
+++ b/
help/html/colourSchemes/hydrophobic.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/index.html
b/help/html/colourSchemes/index.html
index
450e1aa
..
b072c38
100755
(executable)
--- a/
help/html/colourSchemes/index.html
+++ b/
help/html/colourSchemes/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/nucleotide.html
b/help/html/colourSchemes/nucleotide.html
index
065c818
..
4327132
100755
(executable)
--- a/
help/html/colourSchemes/nucleotide.html
+++ b/
help/html/colourSchemes/nucleotide.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/pid.html
b/help/html/colourSchemes/pid.html
index
d4e70fb
..
0b006a6
100755
(executable)
--- a/
help/html/colourSchemes/pid.html
+++ b/
help/html/colourSchemes/pid.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/purinepyrimidine.html
b/help/html/colourSchemes/purinepyrimidine.html
index
4337d48
..
1bcb871
100644
(file)
--- a/
help/html/colourSchemes/purinepyrimidine.html
+++ b/
help/html/colourSchemes/purinepyrimidine.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/rnahelicesColouring.html
b/help/html/colourSchemes/rnahelicesColouring.html
index
d9f6be3
..
1da773c
100644
(file)
--- a/
help/html/colourSchemes/rnahelicesColouring.html
+++ b/
help/html/colourSchemes/rnahelicesColouring.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/strand.html
b/help/html/colourSchemes/strand.html
index
fe7c469
..
9be7b2a
100755
(executable)
--- a/
help/html/colourSchemes/strand.html
+++ b/
help/html/colourSchemes/strand.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/taylor.html
b/help/html/colourSchemes/taylor.html
index
a5c4f05
..
b1c6749
100755
(executable)
--- a/
help/html/colourSchemes/taylor.html
+++ b/
help/html/colourSchemes/taylor.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/textcolour.html
b/help/html/colourSchemes/textcolour.html
index
a983e14
..
50beab9
100644
(file)
--- a/
help/html/colourSchemes/textcolour.html
+++ b/
help/html/colourSchemes/textcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/turn.html
b/help/html/colourSchemes/turn.html
index
87dbe37
..
c0239c4
100755
(executable)
--- a/
help/html/colourSchemes/turn.html
+++ b/
help/html/colourSchemes/turn.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/user.html
b/help/html/colourSchemes/user.html
index
5eacca9
..
3d41a75
100755
(executable)
--- a/
help/html/colourSchemes/user.html
+++ b/
help/html/colourSchemes/user.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/colourSchemes/zappo.html
b/help/html/colourSchemes/zappo.html
index
db025c0
..
61e2f28
100755
(executable)
--- a/
help/html/colourSchemes/zappo.html
+++ b/
help/html/colourSchemes/zappo.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/editing/index.html
b/help/html/editing/index.html
index
ac07168
..
de1303c
100755
(executable)
--- a/
help/html/editing/index.html
+++ b/
help/html/editing/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotation.html
b/help/html/features/annotation.html
index
01d9f64
..
b3e09c8
100755
(executable)
--- a/
help/html/features/annotation.html
+++ b/
help/html/features/annotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/annotationsFormat.html
b/help/html/features/annotationsFormat.html
index
141379f
..
59f3122
100755
(executable)
--- a/
help/html/features/annotationsFormat.html
+++ b/
help/html/features/annotationsFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/chimera.html
b/help/html/features/chimera.html
index
dbaad73
..
a917c13
100644
(file)
--- a/
help/html/features/chimera.html
+++ b/
help/html/features/chimera.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/clarguments.html
b/help/html/features/clarguments.html
index
2a040fe
..
27b4cb3
100644
(file)
--- a/
help/html/features/clarguments.html
+++ b/
help/html/features/clarguments.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/codingfeatures.html
b/help/html/features/codingfeatures.html
index
a436780
..
b2b23e3
100644
(file)
--- a/
help/html/features/codingfeatures.html
+++ b/
help/html/features/codingfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/commandline.html
b/help/html/features/commandline.html
index
6d24c0c
..
731f9ff
100644
(file)
--- a/
help/html/features/commandline.html
+++ b/
help/html/features/commandline.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/creatinFeatures.html
b/help/html/features/creatinFeatures.html
index
e7e8a8e
..
644e745
100644
(file)
--- a/
help/html/features/creatinFeatures.html
+++ b/
help/html/features/creatinFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/cursorMode.html
b/help/html/features/cursorMode.html
index
936016f
..
045efae
100755
(executable)
--- a/
help/html/features/cursorMode.html
+++ b/
help/html/features/cursorMode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dasfeatures.html
b/help/html/features/dasfeatures.html
index
0690111
..
9c99524
100644
(file)
--- a/
help/html/features/dasfeatures.html
+++ b/
help/html/features/dasfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/dassettings.html
b/help/html/features/dassettings.html
index
86162dc
..
f2ecd44
100644
(file)
--- a/
help/html/features/dassettings.html
+++ b/
help/html/features/dassettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/editingFeatures.html
b/help/html/features/editingFeatures.html
index
6f229df
..
0f67b46
100644
(file)
--- a/
help/html/features/editingFeatures.html
+++ b/
help/html/features/editingFeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresFormat.html
b/help/html/features/featuresFormat.html
index
32b4ccb
..
ee7f51c
100755
(executable)
--- a/
help/html/features/featuresFormat.html
+++ b/
help/html/features/featuresFormat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featureschemes.html
b/help/html/features/featureschemes.html
index
6b14021
..
121c505
100644
(file)
--- a/
help/html/features/featureschemes.html
+++ b/
help/html/features/featureschemes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/featuresettings.html
b/help/html/features/featuresettings.html
index
3830302
..
51f97a2
100755
(executable)
--- a/
help/html/features/featuresettings.html
+++ b/
help/html/features/featuresettings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/groovy.html
b/help/html/features/groovy.html
index
6559fd1
..
c7ff5be
100644
(file)
--- a/
help/html/features/groovy.html
+++ b/
help/html/features/groovy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/hiddenRegions.html
b/help/html/features/hiddenRegions.html
index
63920f5
..
b482b3b
100644
(file)
--- a/
help/html/features/hiddenRegions.html
+++ b/
help/html/features/hiddenRegions.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jalarchive.html
b/help/html/features/jalarchive.html
index
472114a
..
aa0c2ff
100755
(executable)
--- a/
help/html/features/jalarchive.html
+++ b/
help/html/features/jalarchive.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/jmol.html
b/help/html/features/jmol.html
index
45e5526
..
40b5b73
100644
(file)
--- a/
help/html/features/jmol.html
+++ b/
help/html/features/jmol.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/multipleViews.html
b/help/html/features/multipleViews.html
index
b1ccf4b
..
2dbdc6b
100644
(file)
--- a/
help/html/features/multipleViews.html
+++ b/
help/html/features/multipleViews.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/newkeystrokes.html
b/help/html/features/newkeystrokes.html
index
d4c532e
..
35dc5ad
100644
(file)
--- a/
help/html/features/newkeystrokes.html
+++ b/
help/html/features/newkeystrokes.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/overview.html
b/help/html/features/overview.html
index
50d45f2
..
e1207d5
100755
(executable)
--- a/
help/html/features/overview.html
+++ b/
help/html/features/overview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/pdbviewer.html
b/help/html/features/pdbviewer.html
index
8deebae
..
2bfaeb6
100755
(executable)
--- a/
help/html/features/pdbviewer.html
+++ b/
help/html/features/pdbviewer.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/preferences.html
b/help/html/features/preferences.html
index
657359e
..
e17634b
100755
(executable)
--- a/
help/html/features/preferences.html
+++ b/
help/html/features/preferences.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/search.html
b/help/html/features/search.html
index
47c0a3b
..
dc89ae5
100755
(executable)
--- a/
help/html/features/search.html
+++ b/
help/html/features/search.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfeatures.html
b/help/html/features/seqfeatures.html
index
842c93a
..
b016141
100755
(executable)
--- a/
help/html/features/seqfeatures.html
+++ b/
help/html/features/seqfeatures.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqfetch.html
b/help/html/features/seqfetch.html
index
5f0744d
..
ffd1cb3
100755
(executable)
--- a/
help/html/features/seqfetch.html
+++ b/
help/html/features/seqfetch.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/seqmappings.html
b/help/html/features/seqmappings.html
index
3731ad1
..
9c20188
100644
(file)
--- a/
help/html/features/seqmappings.html
+++ b/
help/html/features/seqmappings.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/varna.html
b/help/html/features/varna.html
index
290135c
..
20bc0ac
100644
(file)
--- a/
help/html/features/varna.html
+++ b/
help/html/features/varna.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/viewingpdbs.html
b/help/html/features/viewingpdbs.html
index
99f17fe
..
a57a96f
100755
(executable)
--- a/
help/html/features/viewingpdbs.html
+++ b/
help/html/features/viewingpdbs.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/wrap.html
b/help/html/features/wrap.html
index
883a024
..
ab620d1
100755
(executable)
--- a/
help/html/features/wrap.html
+++ b/
help/html/features/wrap.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/features/xsspannotation.html
b/help/html/features/xsspannotation.html
index
0dc7475
..
9217bbe
100644
(file)
--- a/
help/html/features/xsspannotation.html
+++ b/
help/html/features/xsspannotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/index.html
b/help/html/index.html
index
11b6f2a
..
2e091f0
100755
(executable)
--- a/
help/html/index.html
+++ b/
help/html/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/export.html
b/help/html/io/export.html
index
518729b
..
22c5f6d
100755
(executable)
--- a/
help/html/io/export.html
+++ b/
help/html/io/export.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/exportseqreport.html
b/help/html/io/exportseqreport.html
index
b1afc3b
..
6d2c365
100644
(file)
--- a/
help/html/io/exportseqreport.html
+++ b/
help/html/io/exportseqreport.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/fileformats.html
b/help/html/io/fileformats.html
index
6017d4b
..
de15dab
100755
(executable)
--- a/
help/html/io/fileformats.html
+++ b/
help/html/io/fileformats.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/index.html
b/help/html/io/index.html
index
0a4c7fa
..
3c36402
100755
(executable)
--- a/
help/html/io/index.html
+++ b/
help/html/io/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/modellerpir.html
b/help/html/io/modellerpir.html
index
3e00831
..
7789803
100755
(executable)
--- a/
help/html/io/modellerpir.html
+++ b/
help/html/io/modellerpir.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/io/tcoffeescores.html
b/help/html/io/tcoffeescores.html
index
23a167c
..
1e8ddc2
100644
(file)
--- a/
help/html/io/tcoffeescores.html
+++ b/
help/html/io/tcoffeescores.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/keys.html
b/help/html/keys.html
index
545f08d
..
a5af288
100755
(executable)
--- a/
help/html/keys.html
+++ b/
help/html/keys.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/memory.html
b/help/html/memory.html
index
1cb9596
..
6cb683e
100755
(executable)
--- a/
help/html/memory.html
+++ b/
help/html/memory.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alignmentMenu.html
b/help/html/menus/alignmentMenu.html
index
95dcad8
..
966c005
100755
(executable)
--- a/
help/html/menus/alignmentMenu.html
+++ b/
help/html/menus/alignmentMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotation.html
b/help/html/menus/alwannotation.html
index
2f98542
..
e120aa2
100755
(executable)
--- a/
help/html/menus/alwannotation.html
+++ b/
help/html/menus/alwannotation.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwannotationpanel.html
b/help/html/menus/alwannotationpanel.html
index
7375e63
..
c3f8525
100755
(executable)
--- a/
help/html/menus/alwannotationpanel.html
+++ b/
help/html/menus/alwannotationpanel.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcalculate.html
b/help/html/menus/alwcalculate.html
index
1f0474a
..
22387df
100755
(executable)
--- a/
help/html/menus/alwcalculate.html
+++ b/
help/html/menus/alwcalculate.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwcolour.html
b/help/html/menus/alwcolour.html
index
2ad79d5
..
8d21916
100755
(executable)
--- a/
help/html/menus/alwcolour.html
+++ b/
help/html/menus/alwcolour.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwedit.html
b/help/html/menus/alwedit.html
index
67b3d2e
..
933a1bf
100755
(executable)
--- a/
help/html/menus/alwedit.html
+++ b/
help/html/menus/alwedit.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwfile.html
b/help/html/menus/alwfile.html
index
bf459e3
..
0605040
100755
(executable)
--- a/
help/html/menus/alwfile.html
+++ b/
help/html/menus/alwfile.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwformat.html
b/help/html/menus/alwformat.html
index
d0a46a0
..
c48eedd
100644
(file)
--- a/
help/html/menus/alwformat.html
+++ b/
help/html/menus/alwformat.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwselect.html
b/help/html/menus/alwselect.html
index
c40cf09
..
fa83f1a
100644
(file)
--- a/
help/html/menus/alwselect.html
+++ b/
help/html/menus/alwselect.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/alwview.html
b/help/html/menus/alwview.html
index
e8fce84
..
23b0103
100755
(executable)
--- a/
help/html/menus/alwview.html
+++ b/
help/html/menus/alwview.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/desktopMenu.html
b/help/html/menus/desktopMenu.html
index
153a79a
..
df7e6fa
100755
(executable)
--- a/
help/html/menus/desktopMenu.html
+++ b/
help/html/menus/desktopMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/index.html
b/help/html/menus/index.html
index
7e1ed70
..
0f14eae
100755
(executable)
--- a/
help/html/menus/index.html
+++ b/
help/html/menus/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/popupMenu.html
b/help/html/menus/popupMenu.html
index
63bb815
..
fd3e6cf
100755
(executable)
--- a/
help/html/menus/popupMenu.html
+++ b/
help/html/menus/popupMenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/menus/wsmenu.html
b/help/html/menus/wsmenu.html
index
9b8d66c
..
193a3c8
100755
(executable)
--- a/
help/html/menus/wsmenu.html
+++ b/
help/html/menus/wsmenu.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aaproperties.html
b/help/html/misc/aaproperties.html
index
d65ca4d
..
3ec29fa
100755
(executable)
--- a/
help/html/misc/aaproperties.html
+++ b/
help/html/misc/aaproperties.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/aminoAcids.html
b/help/html/misc/aminoAcids.html
index
5d93f95
..
048d361
100755
(executable)
--- a/
help/html/misc/aminoAcids.html
+++ b/
help/html/misc/aminoAcids.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/misc/geneticCode.html
b/help/html/misc/geneticCode.html
index
5695dc4
..
6868ccd
100755
(executable)
--- a/
help/html/misc/geneticCode.html
+++ b/
help/html/misc/geneticCode.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/na/index.html
b/help/html/na/index.html
index
844b6b7
..
4bff53b
100644
(file)
--- a/
help/html/na/index.html
+++ b/
help/html/na/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/privacy.html
b/help/html/privacy.html
index
e19122c
..
d3313cf
100644
(file)
--- a/
help/html/privacy.html
+++ b/
help/html/privacy.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/releases.html
b/help/html/releases.html
index
92a39cb
..
a97c11c
100755
(executable)
--- a/
help/html/releases.html
+++ b/
help/html/releases.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
@@
-43,6
+43,24
@@
</td>
</tr>
<tr>
</td>
</tr>
<tr>
+ <td width="60" nowrap>
+ <div align="center">
+ <strong><a name="Jalview.2.8.2b1">2.8.2b1</a><br /> <em>15/12/2014</em></strong>
+ </div>
+ </td>
+ <td>
+ <div align="center">
+ </div>
+ </td>
+ <td>
+ <div align="center">
+ <ul><li>Reinstated the display of default example file on startup</li>
+ <li>All pairs shown in Jalview window when viewing result of pairwise alignment</li>
+ </ul>
+ </div>
+ </td>
+ </tr>
+ <tr>
<td><div align="center">
<strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>3/12/2014</em></strong>
</div></td>
<td><div align="center">
<strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>3/12/2014</em></strong>
</div></td>
diff --git
a/help/html/vamsas/index.html
b/help/html/vamsas/index.html
index
fcc9b0c
..
a949459
100644
(file)
--- a/
help/html/vamsas/index.html
+++ b/
help/html/vamsas/index.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/AACon.html
b/help/html/webServices/AACon.html
index
9653e2c
..
4dd73fe
100644
(file)
--- a/
help/html/webServices/AACon.html
+++ b/
help/html/webServices/AACon.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/JABAWS.html
b/help/html/webServices/JABAWS.html
index
8c964b4
..
4ed0645
100644
(file)
--- a/
help/html/webServices/JABAWS.html
+++ b/
help/html/webServices/JABAWS.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/RNAalifold.html
b/help/html/webServices/RNAalifold.html
index
6c3c6b5
..
1771d10
100644
(file)
--- a/
help/html/webServices/RNAalifold.html
+++ b/
help/html/webServices/RNAalifold.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/dbreffetcher.html
b/help/html/webServices/dbreffetcher.html
index
b02f940
..
5f1cea7
100644
(file)
--- a/
help/html/webServices/dbreffetcher.html
+++ b/
help/html/webServices/dbreffetcher.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/index.html
b/help/html/webServices/index.html
index
29c74a9
..
f0dbd04
100755
(executable)
--- a/
help/html/webServices/index.html
+++ b/
help/html/webServices/index.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/jnet.html
b/help/html/webServices/jnet.html
index
5555c73
..
7bba590
100755
(executable)
--- a/
help/html/webServices/jnet.html
+++ b/
help/html/webServices/jnet.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/msaclient.html
b/help/html/webServices/msaclient.html
index
d1bedcb
..
1bc0114
100644
(file)
--- a/
help/html/webServices/msaclient.html
+++ b/
help/html/webServices/msaclient.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/newsreader.html
b/help/html/webServices/newsreader.html
index
79709fd
..
c0e5ade
100644
(file)
--- a/
help/html/webServices/newsreader.html
+++ b/
help/html/webServices/newsreader.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/proteinDisorder.html
b/help/html/webServices/proteinDisorder.html
index
c267269
..
2f0506e
100644
(file)
--- a/
help/html/webServices/proteinDisorder.html
+++ b/
help/html/webServices/proteinDisorder.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/shmr.html
b/help/html/webServices/shmr.html
index
5d67f8a
..
09a0a39
100755
(executable)
--- a/
help/html/webServices/shmr.html
+++ b/
help/html/webServices/shmr.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/urllinks.html
b/help/html/webServices/urllinks.html
index
c9d9832
..
fb1e9f3
100644
(file)
--- a/
help/html/webServices/urllinks.html
+++ b/
help/html/webServices/urllinks.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesParams.html
b/help/html/webServices/webServicesParams.html
index
ba4a161
..
0917810
100644
(file)
--- a/
help/html/webServices/webServicesParams.html
+++ b/
help/html/webServices/webServicesParams.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/webServices/webServicesPrefs.html
b/help/html/webServices/webServicesPrefs.html
index
c00b7f0
..
0f16f67
100644
(file)
--- a/
help/html/webServices/webServicesPrefs.html
+++ b/
help/html/webServices/webServicesPrefs.html
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/help/html/whatsNew.html
b/help/html/whatsNew.html
index
a5d5d4a
..
d9d25f4
100755
(executable)
--- a/
help/html/whatsNew.html
+++ b/
help/html/whatsNew.html
@@
-1,6
+1,6
@@
<html>
<!--
<html>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/jalview-jalopy.xml
b/jalview-jalopy.xml
index
6260057
..
fab7981
100755
(executable)
--- a/
jalview-jalopy.xml
+++ b/
jalview-jalopy.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbbuild.xml
b/nbbuild.xml
index
1fbf3c9
..
f672531
100644
(file)
--- a/
nbbuild.xml
+++ b/
nbbuild.xml
@@
-1,5
+1,5
@@
<!--
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/nbproject/project.xml
b/nbproject/project.xml
index
6c49988
..
e64189c
100644
(file)
--- a/
nbproject/project.xml
+++ b/
nbproject/project.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/embl_mapping.xml
b/resources/embl_mapping.xml
index
b6aae2c
..
f7bc20c
100644
(file)
--- a/
resources/embl_mapping.xml
+++ b/
resources/embl_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/resources/uniprot_mapping.xml
b/resources/uniprot_mapping.xml
index
092a3c7
..
b91839c
100755
(executable)
--- a/
resources/uniprot_mapping.xml
+++ b/
resources/uniprot_mapping.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/JalviewWsParamSet.xsd
b/schemas/JalviewWsParamSet.xsd
index
0e06413
..
d765c2f
100644
(file)
--- a/
schemas/JalviewWsParamSet.xsd
+++ b/
schemas/JalviewWsParamSet.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/castor-mapping.xsd
b/schemas/castor-mapping.xsd
index
edfc92d
..
ae6fac0
100644
(file)
--- a/
schemas/castor-mapping.xsd
+++ b/
schemas/castor-mapping.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/jalview.nodesc.properties
b/schemas/jalview.nodesc.properties
index
3ecf2a4
..
ce68141
100644
(file)
--- a/
schemas/jalview.nodesc.properties
+++ b/
schemas/jalview.nodesc.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.properties
b/schemas/jalview.properties
index
625c06d
..
2e39dc6
100644
(file)
--- a/
schemas/jalview.properties
+++ b/
schemas/jalview.properties
@@
-1,5
+1,5
@@
##
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/schemas/jalview.xsd
b/schemas/jalview.xsd
index
27f952d
..
3389835
100755
(executable)
--- a/
schemas/jalview.xsd
+++ b/
schemas/jalview.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/jalviewJvV1.xsd
b/schemas/jalviewJvV1.xsd
index
92218ff
..
efff68c
100644
(file)
--- a/
schemas/jalviewJvV1.xsd
+++ b/
schemas/jalviewJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsas.xsd
b/schemas/vamsas.xsd
index
646a222
..
72ae35c
100755
(executable)
--- a/
schemas/vamsas.xsd
+++ b/
schemas/vamsas.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/schemas/vamsasJvV1.xsd
b/schemas/vamsasJvV1.xsd
index
b6d79fa
..
e826695
100644
(file)
--- a/
schemas/vamsasJvV1.xsd
+++ b/
schemas/vamsasJvV1.xsd
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8"?>
<!--
<?xml version="1.0" encoding="UTF-8"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBCanvas.java
b/src/MCview/AppletPDBCanvas.java
index
a1bb272
..
6729ed5
100644
(file)
--- a/
src/MCview/AppletPDBCanvas.java
+++ b/
src/MCview/AppletPDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/AppletPDBViewer.java
b/src/MCview/AppletPDBViewer.java
index
b55dde5
..
0675af1
100644
(file)
--- a/
src/MCview/AppletPDBViewer.java
+++ b/
src/MCview/AppletPDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Atom.java
b/src/MCview/Atom.java
index
9254fd8
..
96faa5a
100755
(executable)
--- a/
src/MCview/Atom.java
+++ b/
src/MCview/Atom.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Bond.java
b/src/MCview/Bond.java
index
f76cbc2
..
547dc5f
100755
(executable)
--- a/
src/MCview/Bond.java
+++ b/
src/MCview/Bond.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/MCMatrix.java
b/src/MCview/MCMatrix.java
index
352e926
..
37347a6
100755
(executable)
--- a/
src/MCview/MCMatrix.java
+++ b/
src/MCview/MCMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBCanvas.java
b/src/MCview/PDBCanvas.java
index
dc0f718
..
edfdff2
100644
(file)
--- a/
src/MCview/PDBCanvas.java
+++ b/
src/MCview/PDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
49d7d4a
..
9cf7097
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBViewer.java
b/src/MCview/PDBViewer.java
index
bf285b9
..
e16241b
100755
(executable)
--- a/
src/MCview/PDBViewer.java
+++ b/
src/MCview/PDBViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
691fdcd
..
cb36989
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Residue.java
b/src/MCview/Residue.java
index
6789fe1
..
b1d8413
100755
(executable)
--- a/
src/MCview/Residue.java
+++ b/
src/MCview/Residue.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/MCview/Zsort.java
b/src/MCview/Zsort.java
index
16731ef
..
3209e17
100755
(executable)
--- a/
src/MCview/Zsort.java
+++ b/
src/MCview/Zsort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/castor.properties
b/src/castor.properties
index
c691302
..
e41d930
100644
(file)
--- a/
src/castor.properties
+++ b/
src/castor.properties
@@
-1,5
+1,5
@@
###############################################################################
###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistry.java
b/src/ext/vamsas/IRegistry.java
index
51e3117
..
56781cc
100755
(executable)
--- a/
src/ext/vamsas/IRegistry.java
+++ b/
src/ext/vamsas/IRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryService.java
b/src/ext/vamsas/IRegistryService.java
index
6aae76a
..
922cb91
100755
(executable)
--- a/
src/ext/vamsas/IRegistryService.java
+++ b/
src/ext/vamsas/IRegistryService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/IRegistryServiceLocator.java
b/src/ext/vamsas/IRegistryServiceLocator.java
index
3473d4c
..
dee68a9
100755
(executable)
--- a/
src/ext/vamsas/IRegistryServiceLocator.java
+++ b/
src/ext/vamsas/IRegistryServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/Jpred.java
b/src/ext/vamsas/Jpred.java
index
a273332
..
20ae990
100755
(executable)
--- a/
src/ext/vamsas/Jpred.java
+++ b/
src/ext/vamsas/Jpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredService.java
b/src/ext/vamsas/JpredService.java
index
9f894a8
..
4b10059
100755
(executable)
--- a/
src/ext/vamsas/JpredService.java
+++ b/
src/ext/vamsas/JpredService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredServiceLocator.java
b/src/ext/vamsas/JpredServiceLocator.java
index
79e9636
..
aa651c3
100755
(executable)
--- a/
src/ext/vamsas/JpredServiceLocator.java
+++ b/
src/ext/vamsas/JpredServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/JpredSoapBindingStub.java
b/src/ext/vamsas/JpredSoapBindingStub.java
index
b84eef9
..
fb96317
100755
(executable)
--- a/
src/ext/vamsas/JpredSoapBindingStub.java
+++ b/
src/ext/vamsas/JpredSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWS.java
b/src/ext/vamsas/MuscleWS.java
index
2426ae2
..
2ec376f
100755
(executable)
--- a/
src/ext/vamsas/MuscleWS.java
+++ b/
src/ext/vamsas/MuscleWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSService.java
b/src/ext/vamsas/MuscleWSService.java
index
3fa8103
..
5876ac9
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSService.java
+++ b/
src/ext/vamsas/MuscleWSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSServiceLocator.java
b/src/ext/vamsas/MuscleWSServiceLocator.java
index
9a580f8
..
5b7719d
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/
src/ext/vamsas/MuscleWSServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/MuscleWSSoapBindingStub.java
b/src/ext/vamsas/MuscleWSSoapBindingStub.java
index
d5484af
..
b6591c3
100755
(executable)
--- a/
src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/
src/ext/vamsas/MuscleWSSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
index
810ce40
..
e7ccbc0
100755
(executable)
--- a/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchI.java
b/src/ext/vamsas/SeqSearchI.java
index
1e54f13
..
fe6abcf
100644
(file)
--- a/
src/ext/vamsas/SeqSearchI.java
+++ b/
src/ext/vamsas/SeqSearchI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceLocator.java
b/src/ext/vamsas/SeqSearchServiceLocator.java
index
75f46a3
..
cc48e78
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/
src/ext/vamsas/SeqSearchServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceService.java
b/src/ext/vamsas/SeqSearchServiceService.java
index
d7b603b
..
cdf8f15
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceService.java
+++ b/
src/ext/vamsas/SeqSearchServiceService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
index
c507a94
..
9b453bb
100644
(file)
--- a/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandle.java
b/src/ext/vamsas/ServiceHandle.java
index
b4b6c39
..
a9c46b8
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandle.java
+++ b/
src/ext/vamsas/ServiceHandle.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/ext/vamsas/ServiceHandles.java
b/src/ext/vamsas/ServiceHandles.java
index
a0156c1
..
ab69a8b
100755
(executable)
--- a/
src/ext/vamsas/ServiceHandles.java
+++ b/
src/ext/vamsas/ServiceHandles.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AAFrequency.java
b/src/jalview/analysis/AAFrequency.java
index
69d32cb
..
8025882
100755
(executable)
--- a/
src/jalview/analysis/AAFrequency.java
+++ b/
src/jalview/analysis/AAFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
ba7e520
..
eacceb0
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
b7cfbbd
..
125ca15
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/AlignmentUtils.java
b/src/jalview/analysis/AlignmentUtils.java
index
6385fa7
..
64d5cd0
100644
(file)
--- a/
src/jalview/analysis/AlignmentUtils.java
+++ b/
src/jalview/analysis/AlignmentUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
4d64685
..
0625a9a
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/CrossRef.java
b/src/jalview/analysis/CrossRef.java
index
fa0fe2f
..
b3e9f34
100644
(file)
--- a/
src/jalview/analysis/CrossRef.java
+++ b/
src/jalview/analysis/CrossRef.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
2e56e67
..
79dcab4
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Finder.java
b/src/jalview/analysis/Finder.java
index
96151d7
..
edf9deb
100644
(file)
--- a/
src/jalview/analysis/Finder.java
+++ b/
src/jalview/analysis/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Grouping.java
b/src/jalview/analysis/Grouping.java
index
e4c9cea
..
8ed3a7b
100644
(file)
--- a/
src/jalview/analysis/Grouping.java
+++ b/
src/jalview/analysis/Grouping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/NJTree.java
b/src/jalview/analysis/NJTree.java
index
a8ca3f7
..
7852e4d
100644
(file)
--- a/
src/jalview/analysis/NJTree.java
+++ b/
src/jalview/analysis/NJTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/PCA.java
b/src/jalview/analysis/PCA.java
index
f34fe83
..
39ed194
100755
(executable)
--- a/
src/jalview/analysis/PCA.java
+++ b/
src/jalview/analysis/PCA.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/ParseProperties.java
b/src/jalview/analysis/ParseProperties.java
index
69c5c07
..
8a1df43
100644
(file)
--- a/
src/jalview/analysis/ParseProperties.java
+++ b/
src/jalview/analysis/ParseProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/Rna.java
b/src/jalview/analysis/Rna.java
index
227bf09
..
05573d7
100644
(file)
--- a/
src/jalview/analysis/Rna.java
+++ b/
src/jalview/analysis/Rna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SecStrConsensus.java
b/src/jalview/analysis/SecStrConsensus.java
index
1400a64
..
ae41e4d
100644
(file)
--- a/
src/jalview/analysis/SecStrConsensus.java
+++ b/
src/jalview/analysis/SecStrConsensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
5c6b99b
..
d2b5b72
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/SequenceIdMatcher.java
b/src/jalview/analysis/SequenceIdMatcher.java
index
aec7faf
..
f14afb2
100755
(executable)
--- a/
src/jalview/analysis/SequenceIdMatcher.java
+++ b/
src/jalview/analysis/SequenceIdMatcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/StructureFrequency.java
b/src/jalview/analysis/StructureFrequency.java
index
dc0212e
..
001a034
100644
(file)
--- a/
src/jalview/analysis/StructureFrequency.java
+++ b/
src/jalview/analysis/StructureFrequency.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/WUSSParseException.java
b/src/jalview/analysis/WUSSParseException.java
index
56698c6
..
215b994
100644
(file)
--- a/
src/jalview/analysis/WUSSParseException.java
+++ b/
src/jalview/analysis/WUSSParseException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/PIDScoreModel.java
b/src/jalview/analysis/scoremodels/PIDScoreModel.java
index
f107731
..
0628ddd
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PIDScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/PIDScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
b/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
index
70e886a
..
c518b21
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/analysis/scoremodels/SWScoreModel.java
b/src/jalview/analysis/scoremodels/SWScoreModel.java
index
93bb56d
..
f23897c
100644
(file)
--- a/
src/jalview/analysis/scoremodels/SWScoreModel.java
+++ b/
src/jalview/analysis/scoremodels/SWScoreModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcManagerI.java
b/src/jalview/api/AlignCalcManagerI.java
index
199aa7d
..
7d73b12
100644
(file)
--- a/
src/jalview/api/AlignCalcManagerI.java
+++ b/
src/jalview/api/AlignCalcManagerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignCalcWorkerI.java
b/src/jalview/api/AlignCalcWorkerI.java
index
48fa750
..
87a1ee8
100644
(file)
--- a/
src/jalview/api/AlignCalcWorkerI.java
+++ b/
src/jalview/api/AlignCalcWorkerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewControllerGuiI.java
b/src/jalview/api/AlignViewControllerGuiI.java
index
b9638e5
..
37bbf74
100644
(file)
--- a/
src/jalview/api/AlignViewControllerGuiI.java
+++ b/
src/jalview/api/AlignViewControllerGuiI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewControllerI.java
b/src/jalview/api/AlignViewControllerI.java
index
35f084f
..
8a4465b
100644
(file)
--- a/
src/jalview/api/AlignViewControllerI.java
+++ b/
src/jalview/api/AlignViewControllerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignViewportI.java
b/src/jalview/api/AlignViewportI.java
index
d8ba30d
..
f6036de
100644
(file)
--- a/
src/jalview/api/AlignViewportI.java
+++ b/
src/jalview/api/AlignViewportI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/AlignmentViewPanel.java
b/src/jalview/api/AlignmentViewPanel.java
index
0955cb4
..
ef894cd
100644
(file)
--- a/
src/jalview/api/AlignmentViewPanel.java
+++ b/
src/jalview/api/AlignmentViewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/FeatureRenderer.java
b/src/jalview/api/FeatureRenderer.java
index
679cded
..
8b86a58
100644
(file)
--- a/
src/jalview/api/FeatureRenderer.java
+++ b/
src/jalview/api/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/OOMHandlerI.java
b/src/jalview/api/OOMHandlerI.java
index
5c7200c
..
862aae9
100644
(file)
--- a/
src/jalview/api/OOMHandlerI.java
+++ b/
src/jalview/api/OOMHandlerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/RotatableCanvasI.java
b/src/jalview/api/RotatableCanvasI.java
index
14b9cc9
..
f6d6ef9
100644
(file)
--- a/
src/jalview/api/RotatableCanvasI.java
+++ b/
src/jalview/api/RotatableCanvasI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceRenderer.java
b/src/jalview/api/SequenceRenderer.java
index
fbd5e4a
..
0ec0345
100644
(file)
--- a/
src/jalview/api/SequenceRenderer.java
+++ b/
src/jalview/api/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/SequenceStructureBinding.java
b/src/jalview/api/SequenceStructureBinding.java
index
32c5bca
..
ec80172
100644
(file)
--- a/
src/jalview/api/SequenceStructureBinding.java
+++ b/
src/jalview/api/SequenceStructureBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/StructureSelectionManagerProvider.java
b/src/jalview/api/StructureSelectionManagerProvider.java
index
dc37933
..
9f3268f
100644
(file)
--- a/
src/jalview/api/StructureSelectionManagerProvider.java
+++ b/
src/jalview/api/StructureSelectionManagerProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/analysis/ScoreModelI.java
b/src/jalview/api/analysis/ScoreModelI.java
index
ad28faf
..
7999d61
100644
(file)
--- a/
src/jalview/api/analysis/ScoreModelI.java
+++ b/
src/jalview/api/analysis/ScoreModelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/api/structures/JalviewStructureDisplayI.java
b/src/jalview/api/structures/JalviewStructureDisplayI.java
index
efb60dd
..
12723e9
100644
(file)
--- a/
src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/
src/jalview/api/structures/JalviewStructureDisplayI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
98a4a1c
..
57e2674
100644
(file)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignFrame.java
b/src/jalview/appletgui/AlignFrame.java
index
ed64215
..
4473877
100644
(file)
--- a/
src/jalview/appletgui/AlignFrame.java
+++ b/
src/jalview/appletgui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
7400122
..
a235a2a
100644
(file)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
a90425f
..
f2fca58
100644
(file)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationColourChooser.java
b/src/jalview/appletgui/AnnotationColourChooser.java
index
c7b7c6c
..
c1363d7
100644
(file)
--- a/
src/jalview/appletgui/AnnotationColourChooser.java
+++ b/
src/jalview/appletgui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationLabels.java
b/src/jalview/appletgui/AnnotationLabels.java
index
3e81664
..
85a2fbe
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationLabels.java
+++ b/
src/jalview/appletgui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AnnotationPanel.java
b/src/jalview/appletgui/AnnotationPanel.java
index
22996f7
..
e17ce20
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationPanel.java
+++ b/
src/jalview/appletgui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
42fbd70
..
4b014d1
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/AppletJmolBinding.java
b/src/jalview/appletgui/AppletJmolBinding.java
index
650693d
..
713a348
100644
(file)
--- a/
src/jalview/appletgui/AppletJmolBinding.java
+++ b/
src/jalview/appletgui/AppletJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/CutAndPasteTransfer.java
b/src/jalview/appletgui/CutAndPasteTransfer.java
index
636dd7f
..
b0e1ad7
100644
(file)
--- a/
src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/
src/jalview/appletgui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EditNameDialog.java
b/src/jalview/appletgui/EditNameDialog.java
index
4f1ce84
..
44fe9ee
100644
(file)
--- a/
src/jalview/appletgui/EditNameDialog.java
+++ b/
src/jalview/appletgui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/EmbmenuFrame.java
b/src/jalview/appletgui/EmbmenuFrame.java
index
c527308
..
359f5d8
100644
(file)
--- a/
src/jalview/appletgui/EmbmenuFrame.java
+++ b/
src/jalview/appletgui/EmbmenuFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ExtJmol.java
b/src/jalview/appletgui/ExtJmol.java
index
6389250
..
4746932
100644
(file)
--- a/
src/jalview/appletgui/ExtJmol.java
+++ b/
src/jalview/appletgui/ExtJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureColourChooser.java
b/src/jalview/appletgui/FeatureColourChooser.java
index
32ffdbf
..
e57a0e9
100644
(file)
--- a/
src/jalview/appletgui/FeatureColourChooser.java
+++ b/
src/jalview/appletgui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureRenderer.java
b/src/jalview/appletgui/FeatureRenderer.java
index
29c3ac5
..
6024872
100644
(file)
--- a/
src/jalview/appletgui/FeatureRenderer.java
+++ b/
src/jalview/appletgui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FeatureSettings.java
b/src/jalview/appletgui/FeatureSettings.java
index
cd11a35
..
39c984d
100755
(executable)
--- a/
src/jalview/appletgui/FeatureSettings.java
+++ b/
src/jalview/appletgui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Finder.java
b/src/jalview/appletgui/Finder.java
index
6ca6ddf
..
fd73869
100644
(file)
--- a/
src/jalview/appletgui/Finder.java
+++ b/
src/jalview/appletgui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/FontChooser.java
b/src/jalview/appletgui/FontChooser.java
index
6bc67b5
..
9f18e3e
100644
(file)
--- a/
src/jalview/appletgui/FontChooser.java
+++ b/
src/jalview/appletgui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdCanvas.java
b/src/jalview/appletgui/IdCanvas.java
index
25aa315
..
7ce4778
100755
(executable)
--- a/
src/jalview/appletgui/IdCanvas.java
+++ b/
src/jalview/appletgui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdPanel.java
b/src/jalview/appletgui/IdPanel.java
index
7981634
..
a13c834
100755
(executable)
--- a/
src/jalview/appletgui/IdPanel.java
+++ b/
src/jalview/appletgui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/IdwidthAdjuster.java
b/src/jalview/appletgui/IdwidthAdjuster.java
index
87a2a0e
..
877dc7a
100755
(executable)
--- a/
src/jalview/appletgui/IdwidthAdjuster.java
+++ b/
src/jalview/appletgui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/JVDialog.java
b/src/jalview/appletgui/JVDialog.java
index
4125f1b
..
4db609f
100644
(file)
--- a/
src/jalview/appletgui/JVDialog.java
+++ b/
src/jalview/appletgui/JVDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/OverviewPanel.java
b/src/jalview/appletgui/OverviewPanel.java
index
2c2c41a
..
3d5bd1b
100755
(executable)
--- a/
src/jalview/appletgui/OverviewPanel.java
+++ b/
src/jalview/appletgui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PCAPanel.java
b/src/jalview/appletgui/PCAPanel.java
index
32f02fe
..
7d8940a
100644
(file)
--- a/
src/jalview/appletgui/PCAPanel.java
+++ b/
src/jalview/appletgui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PaintRefresher.java
b/src/jalview/appletgui/PaintRefresher.java
index
3613247
..
7620cb9
100755
(executable)
--- a/
src/jalview/appletgui/PaintRefresher.java
+++ b/
src/jalview/appletgui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/PairwiseAlignPanel.java
b/src/jalview/appletgui/PairwiseAlignPanel.java
index
5a3b56c
..
173919e
100644
(file)
--- a/
src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/
src/jalview/appletgui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RedundancyPanel.java
b/src/jalview/appletgui/RedundancyPanel.java
index
8e364f0
..
6182532
100644
(file)
--- a/
src/jalview/appletgui/RedundancyPanel.java
+++ b/
src/jalview/appletgui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/RotatableCanvas.java
b/src/jalview/appletgui/RotatableCanvas.java
index
5426321
..
f6a5505
100755
(executable)
--- a/
src/jalview/appletgui/RotatableCanvas.java
+++ b/
src/jalview/appletgui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/ScalePanel.java
b/src/jalview/appletgui/ScalePanel.java
index
60d89aa
..
6123065
100755
(executable)
--- a/
src/jalview/appletgui/ScalePanel.java
+++ b/
src/jalview/appletgui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
33caf53
..
0e2773d
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SeqPanel.java
b/src/jalview/appletgui/SeqPanel.java
index
592fd4f
..
ba8c6ab
100644
(file)
--- a/
src/jalview/appletgui/SeqPanel.java
+++ b/
src/jalview/appletgui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SequenceRenderer.java
b/src/jalview/appletgui/SequenceRenderer.java
index
697c0d1
..
31e2b9f
100755
(executable)
--- a/
src/jalview/appletgui/SequenceRenderer.java
+++ b/
src/jalview/appletgui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/SliderPanel.java
b/src/jalview/appletgui/SliderPanel.java
index
220a7fb
..
d8f3ec0
100644
(file)
--- a/
src/jalview/appletgui/SliderPanel.java
+++ b/
src/jalview/appletgui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/Tooltip.java
b/src/jalview/appletgui/Tooltip.java
index
a5f50d9
..
45a5ef9
100755
(executable)
--- a/
src/jalview/appletgui/Tooltip.java
+++ b/
src/jalview/appletgui/Tooltip.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
745520b
..
7d457d4
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/TreePanel.java
b/src/jalview/appletgui/TreePanel.java
index
b7c766a
..
90f4bd0
100644
(file)
--- a/
src/jalview/appletgui/TreePanel.java
+++ b/
src/jalview/appletgui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
afa6419
..
9ffe169
100644
(file)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Cache.java
b/src/jalview/bin/Cache.java
index
3dea84e
..
3bb2247
100755
(executable)
--- a/
src/jalview/bin/Cache.java
+++ b/
src/jalview/bin/Cache.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/Jalview.java
b/src/jalview/bin/Jalview.java
index
ff1b180
..
ff5df66
100755
(executable)
--- a/
src/jalview/bin/Jalview.java
+++ b/
src/jalview/bin/Jalview.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLite.java
b/src/jalview/bin/JalviewLite.java
index
ae8bc98
..
dcd3261
100644
(file)
--- a/
src/jalview/bin/JalviewLite.java
+++ b/
src/jalview/bin/JalviewLite.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/bin/JalviewLiteURLRetrieve.java
b/src/jalview/bin/JalviewLiteURLRetrieve.java
index
65ec11a
..
a8bb153
100644
(file)
--- a/
src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/
src/jalview/bin/JalviewLiteURLRetrieve.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Alignment.java
b/src/jalview/binding/Alignment.java
index
354419c
..
9627b20
100644
(file)
--- a/
src/jalview/binding/Alignment.java
+++ b/
src/jalview/binding/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Annotation.java
b/src/jalview/binding/Annotation.java
index
463312f
..
982a780
100644
(file)
--- a/
src/jalview/binding/Annotation.java
+++ b/
src/jalview/binding/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/AnnotationElement.java
b/src/jalview/binding/AnnotationElement.java
index
b63f750
..
4b3000c
100644
(file)
--- a/
src/jalview/binding/AnnotationElement.java
+++ b/
src/jalview/binding/AnnotationElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Colour.java
b/src/jalview/binding/Colour.java
index
09e13ae
..
3888cea
100644
(file)
--- a/
src/jalview/binding/Colour.java
+++ b/
src/jalview/binding/Colour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Feature.java
b/src/jalview/binding/Feature.java
index
7ee1fb1
..
6f51336
100644
(file)
--- a/
src/jalview/binding/Feature.java
+++ b/
src/jalview/binding/Feature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/FeatureSettings.java
b/src/jalview/binding/FeatureSettings.java
index
5cf43eb
..
93d94e2
100644
(file)
--- a/
src/jalview/binding/FeatureSettings.java
+++ b/
src/jalview/binding/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Features.java
b/src/jalview/binding/Features.java
index
3c12a62
..
9d59223
100644
(file)
--- a/
src/jalview/binding/Features.java
+++ b/
src/jalview/binding/Features.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JGroup.java
b/src/jalview/binding/JGroup.java
index
d2db3e8
..
241459d
100644
(file)
--- a/
src/jalview/binding/JGroup.java
+++ b/
src/jalview/binding/JGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JSeq.java
b/src/jalview/binding/JSeq.java
index
7e2b7b1
..
ecf1eb0
100644
(file)
--- a/
src/jalview/binding/JSeq.java
+++ b/
src/jalview/binding/JSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModel.java
b/src/jalview/binding/JalviewModel.java
index
e5def42
..
65f135d
100644
(file)
--- a/
src/jalview/binding/JalviewModel.java
+++ b/
src/jalview/binding/JalviewModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewModelSequence.java
b/src/jalview/binding/JalviewModelSequence.java
index
97d68de
..
c5abe72
100644
(file)
--- a/
src/jalview/binding/JalviewModelSequence.java
+++ b/
src/jalview/binding/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/JalviewUserColours.java
b/src/jalview/binding/JalviewUserColours.java
index
8b70bcf
..
68e45e4
100644
(file)
--- a/
src/jalview/binding/JalviewUserColours.java
+++ b/
src/jalview/binding/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbentry.java
b/src/jalview/binding/Pdbentry.java
index
9b7c1cf
..
27e1952
100644
(file)
--- a/
src/jalview/binding/Pdbentry.java
+++ b/
src/jalview/binding/Pdbentry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/PdbentryItem.java
b/src/jalview/binding/PdbentryItem.java
index
f24d281
..
5eb9c69
100644
(file)
--- a/
src/jalview/binding/PdbentryItem.java
+++ b/
src/jalview/binding/PdbentryItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Pdbids.java
b/src/jalview/binding/Pdbids.java
index
50605f7
..
9952228
100644
(file)
--- a/
src/jalview/binding/Pdbids.java
+++ b/
src/jalview/binding/Pdbids.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Property.java
b/src/jalview/binding/Property.java
index
dada983
..
c0907e0
100644
(file)
--- a/
src/jalview/binding/Property.java
+++ b/
src/jalview/binding/Property.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Sequence.java
b/src/jalview/binding/Sequence.java
index
46f5a98
..
d2ad057
100644
(file)
--- a/
src/jalview/binding/Sequence.java
+++ b/
src/jalview/binding/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceSet.java
b/src/jalview/binding/SequenceSet.java
index
59151c8
..
eef0b9b
100644
(file)
--- a/
src/jalview/binding/SequenceSet.java
+++ b/
src/jalview/binding/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/SequenceType.java
b/src/jalview/binding/SequenceType.java
index
2525782
..
361dbc1
100644
(file)
--- a/
src/jalview/binding/SequenceType.java
+++ b/
src/jalview/binding/SequenceType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Setting.java
b/src/jalview/binding/Setting.java
index
16f2ee4
..
f9063a0
100644
(file)
--- a/
src/jalview/binding/Setting.java
+++ b/
src/jalview/binding/Setting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Tree.java
b/src/jalview/binding/Tree.java
index
ef55876
..
19d8ae1
100644
(file)
--- a/
src/jalview/binding/Tree.java
+++ b/
src/jalview/binding/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColourScheme.java
b/src/jalview/binding/UserColourScheme.java
index
0b55c63
..
9694971
100644
(file)
--- a/
src/jalview/binding/UserColourScheme.java
+++ b/
src/jalview/binding/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/UserColours.java
b/src/jalview/binding/UserColours.java
index
7581cae
..
e901abf
100644
(file)
--- a/
src/jalview/binding/UserColours.java
+++ b/
src/jalview/binding/UserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VAMSAS.java
b/src/jalview/binding/VAMSAS.java
index
bd4ea40
..
0bb696a
100644
(file)
--- a/
src/jalview/binding/VAMSAS.java
+++ b/
src/jalview/binding/VAMSAS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/VamsasModel.java
b/src/jalview/binding/VamsasModel.java
index
43a8134
..
dc06b6c
100644
(file)
--- a/
src/jalview/binding/VamsasModel.java
+++ b/
src/jalview/binding/VamsasModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/binding/Viewport.java
b/src/jalview/binding/Viewport.java
index
e30a7ec
..
3a297bb
100644
(file)
--- a/
src/jalview/binding/Viewport.java
+++ b/
src/jalview/binding/Viewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/ChangeCaseCommand.java
b/src/jalview/commands/ChangeCaseCommand.java
index
47b4d9d
..
1114ce9
100644
(file)
--- a/
src/jalview/commands/ChangeCaseCommand.java
+++ b/
src/jalview/commands/ChangeCaseCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/CommandI.java
b/src/jalview/commands/CommandI.java
index
8359390
..
954d51f
100644
(file)
--- a/
src/jalview/commands/CommandI.java
+++ b/
src/jalview/commands/CommandI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/EditCommand.java
b/src/jalview/commands/EditCommand.java
index
82de3b2
..
aff8595
100644
(file)
--- a/
src/jalview/commands/EditCommand.java
+++ b/
src/jalview/commands/EditCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/OrderCommand.java
b/src/jalview/commands/OrderCommand.java
index
b610a54
..
fbf4a4e
100644
(file)
--- a/
src/jalview/commands/OrderCommand.java
+++ b/
src/jalview/commands/OrderCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapColCommand.java
b/src/jalview/commands/RemoveGapColCommand.java
index
ac93d4e
..
28d419e
100644
(file)
--- a/
src/jalview/commands/RemoveGapColCommand.java
+++ b/
src/jalview/commands/RemoveGapColCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/RemoveGapsCommand.java
b/src/jalview/commands/RemoveGapsCommand.java
index
60d09f7
..
e49d42b
100644
(file)
--- a/
src/jalview/commands/RemoveGapsCommand.java
+++ b/
src/jalview/commands/RemoveGapsCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/SlideSequencesCommand.java
b/src/jalview/commands/SlideSequencesCommand.java
index
382085c
..
937e112
100644
(file)
--- a/
src/jalview/commands/SlideSequencesCommand.java
+++ b/
src/jalview/commands/SlideSequencesCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/commands/TrimRegionCommand.java
b/src/jalview/commands/TrimRegionCommand.java
index
ebbe827
..
f3ac9df
100644
(file)
--- a/
src/jalview/commands/TrimRegionCommand.java
+++ b/
src/jalview/commands/TrimRegionCommand.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/controller/AlignViewController.java
b/src/jalview/controller/AlignViewController.java
index
dbc3524
..
0ad4841
100644
(file)
--- a/
src/jalview/controller/AlignViewController.java
+++ b/
src/jalview/controller/AlignViewController.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignedCodonFrame.java
b/src/jalview/datamodel/AlignedCodonFrame.java
index
3fc08d1
..
fa0f312
100644
(file)
--- a/
src/jalview/datamodel/AlignedCodonFrame.java
+++ b/
src/jalview/datamodel/AlignedCodonFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
9c5914f
..
7c4b3c7
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentAnnotation.java
b/src/jalview/datamodel/AlignmentAnnotation.java
index
e137225
..
9550e83
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentAnnotation.java
+++ b/
src/jalview/datamodel/AlignmentAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentI.java
b/src/jalview/datamodel/AlignmentI.java
index
c7e30a4
..
5bfd878
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentI.java
+++ b/
src/jalview/datamodel/AlignmentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentOrder.java
b/src/jalview/datamodel/AlignmentOrder.java
index
c0f9ab4
..
7012c76
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentOrder.java
+++ b/
src/jalview/datamodel/AlignmentOrder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AlignmentView.java
b/src/jalview/datamodel/AlignmentView.java
index
efb7c4a
..
9458d62
100644
(file)
--- a/
src/jalview/datamodel/AlignmentView.java
+++ b/
src/jalview/datamodel/AlignmentView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/AnnotatedCollectionI.java
b/src/jalview/datamodel/AnnotatedCollectionI.java
index
6814b7e
..
0377d8b
100644
(file)
--- a/
src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/
src/jalview/datamodel/AnnotatedCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Annotation.java
b/src/jalview/datamodel/Annotation.java
index
26dc0fa
..
8e5c490
100755
(executable)
--- a/
src/jalview/datamodel/Annotation.java
+++ b/
src/jalview/datamodel/Annotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinaryNode.java
b/src/jalview/datamodel/BinaryNode.java
index
18707ef
..
7012d3b
100755
(executable)
--- a/
src/jalview/datamodel/BinaryNode.java
+++ b/
src/jalview/datamodel/BinaryNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/BinarySequence.java
b/src/jalview/datamodel/BinarySequence.java
index
4bf81ea
..
fc28147
100755
(executable)
--- a/
src/jalview/datamodel/BinarySequence.java
+++ b/
src/jalview/datamodel/BinarySequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarArray.java
b/src/jalview/datamodel/CigarArray.java
index
529891f
..
1a3d35d
100644
(file)
--- a/
src/jalview/datamodel/CigarArray.java
+++ b/
src/jalview/datamodel/CigarArray.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarBase.java
b/src/jalview/datamodel/CigarBase.java
index
d0ead87
..
7d89244
100644
(file)
--- a/
src/jalview/datamodel/CigarBase.java
+++ b/
src/jalview/datamodel/CigarBase.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarCigar.java
b/src/jalview/datamodel/CigarCigar.java
index
96f3f6f
..
b6e297e
100644
(file)
--- a/
src/jalview/datamodel/CigarCigar.java
+++ b/
src/jalview/datamodel/CigarCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/CigarSimple.java
b/src/jalview/datamodel/CigarSimple.java
index
c961f33
..
77ddec0
100644
(file)
--- a/
src/jalview/datamodel/CigarSimple.java
+++ b/
src/jalview/datamodel/CigarSimple.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ColumnSelection.java
b/src/jalview/datamodel/ColumnSelection.java
index
f414d13
..
8f3550d
100644
(file)
--- a/
src/jalview/datamodel/ColumnSelection.java
+++ b/
src/jalview/datamodel/ColumnSelection.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefEntry.java
b/src/jalview/datamodel/DBRefEntry.java
index
4d4bb05
..
2151fc4
100755
(executable)
--- a/
src/jalview/datamodel/DBRefEntry.java
+++ b/
src/jalview/datamodel/DBRefEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
1af18b6
..
4d3d680
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/FeatureProperties.java
b/src/jalview/datamodel/FeatureProperties.java
index
5c43bc4
..
72635c6
100644
(file)
--- a/
src/jalview/datamodel/FeatureProperties.java
+++ b/
src/jalview/datamodel/FeatureProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/GraphLine.java
b/src/jalview/datamodel/GraphLine.java
index
aab55a1
..
c2dbcb6
100755
(executable)
--- a/
src/jalview/datamodel/GraphLine.java
+++ b/
src/jalview/datamodel/GraphLine.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/HiddenSequences.java
b/src/jalview/datamodel/HiddenSequences.java
index
bfeafd6
..
1dcf655
100755
(executable)
--- a/
src/jalview/datamodel/HiddenSequences.java
+++ b/
src/jalview/datamodel/HiddenSequences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Mapping.java
b/src/jalview/datamodel/Mapping.java
index
cb87719
..
411e4f9
100644
(file)
--- a/
src/jalview/datamodel/Mapping.java
+++ b/
src/jalview/datamodel/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/NodeTransformI.java
b/src/jalview/datamodel/NodeTransformI.java
index
6ca1736
..
ee4f340
100644
(file)
--- a/
src/jalview/datamodel/NodeTransformI.java
+++ b/
src/jalview/datamodel/NodeTransformI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/PDBEntry.java
b/src/jalview/datamodel/PDBEntry.java
index
ee2b549
..
7b30813
100755
(executable)
--- a/
src/jalview/datamodel/PDBEntry.java
+++ b/
src/jalview/datamodel/PDBEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Provenance.java
b/src/jalview/datamodel/Provenance.java
index
a585baf
..
54c3876
100755
(executable)
--- a/
src/jalview/datamodel/Provenance.java
+++ b/
src/jalview/datamodel/Provenance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/ProvenanceEntry.java
b/src/jalview/datamodel/ProvenanceEntry.java
index
64e01f6
..
9da35d9
100755
(executable)
--- a/
src/jalview/datamodel/ProvenanceEntry.java
+++ b/
src/jalview/datamodel/ProvenanceEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SearchResults.java
b/src/jalview/datamodel/SearchResults.java
index
8434e81
..
8b690e5
100755
(executable)
--- a/
src/jalview/datamodel/SearchResults.java
+++ b/
src/jalview/datamodel/SearchResults.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SecondaryStructureAnnotation.java
b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index
13f31d8
..
1edc175
100644
(file)
--- a/
src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/
src/jalview/datamodel/SecondaryStructureAnnotation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SeqCigar.java
b/src/jalview/datamodel/SeqCigar.java
index
8441609
..
77e9111
100644
(file)
--- a/
src/jalview/datamodel/SeqCigar.java
+++ b/
src/jalview/datamodel/SeqCigar.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
0652fb5
..
338aa62
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceCollectionI.java
b/src/jalview/datamodel/SequenceCollectionI.java
index
3af441b
..
9917471
100644
(file)
--- a/
src/jalview/datamodel/SequenceCollectionI.java
+++ b/
src/jalview/datamodel/SequenceCollectionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceFeature.java
b/src/jalview/datamodel/SequenceFeature.java
index
9e1399a
..
2610ed6
100755
(executable)
--- a/
src/jalview/datamodel/SequenceFeature.java
+++ b/
src/jalview/datamodel/SequenceFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
752c6d4
..
0944c34
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
fc67efd
..
64a57ba
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequenceNode.java
b/src/jalview/datamodel/SequenceNode.java
index
2f9563b
..
edcf9b0
100755
(executable)
--- a/
src/jalview/datamodel/SequenceNode.java
+++ b/
src/jalview/datamodel/SequenceNode.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/SequencePoint.java
b/src/jalview/datamodel/SequencePoint.java
index
5d18727
..
e25910d
100755
(executable)
--- a/
src/jalview/datamodel/SequencePoint.java
+++ b/
src/jalview/datamodel/SequencePoint.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotEntry.java
b/src/jalview/datamodel/UniprotEntry.java
index
8fb42f6
..
da29e42
100755
(executable)
--- a/
src/jalview/datamodel/UniprotEntry.java
+++ b/
src/jalview/datamodel/UniprotEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotFile.java
b/src/jalview/datamodel/UniprotFile.java
index
94c7f05
..
ff63dc1
100755
(executable)
--- a/
src/jalview/datamodel/UniprotFile.java
+++ b/
src/jalview/datamodel/UniprotFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotProteinName.java
b/src/jalview/datamodel/UniprotProteinName.java
index
95eae5c
..
b7f8cba
100755
(executable)
--- a/
src/jalview/datamodel/UniprotProteinName.java
+++ b/
src/jalview/datamodel/UniprotProteinName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/UniprotSequence.java
b/src/jalview/datamodel/UniprotSequence.java
index
12f26e1
..
233c1f6
100755
(executable)
--- a/
src/jalview/datamodel/UniprotSequence.java
+++ b/
src/jalview/datamodel/UniprotSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/BasePosition.java
b/src/jalview/datamodel/xdb/embl/BasePosition.java
index
01de0ba
..
a09f087
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/
src/jalview/datamodel/xdb/embl/BasePosition.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
3c88083
..
6ed8404
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblError.java
b/src/jalview/datamodel/xdb/embl/EmblError.java
index
30acc36
..
ac81c25
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblError.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeature.java
b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index
975471a
..
803f869
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
index
41abda1
..
a3c4b20
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
index
7df0698
..
f6708f6
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblFile.java
b/src/jalview/datamodel/xdb/embl/EmblFile.java
index
ec3d050
..
f69011c
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/EmblSequence.java
b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index
69cb77a
..
cccca2b
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/datamodel/xdb/embl/Qualifier.java
b/src/jalview/datamodel/xdb/embl/Qualifier.java
index
948fb31
..
1a9aefd
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/
src/jalview/datamodel/xdb/embl/Qualifier.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
9187912
..
65c27d9
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/JmolCommands.java
b/src/jalview/ext/jmol/JmolCommands.java
index
5c31a3a
..
03bfb6d
100644
(file)
--- a/
src/jalview/ext/jmol/JmolCommands.java
+++ b/
src/jalview/ext/jmol/JmolCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/jmol/PDBFileWithJmol.java
b/src/jalview/ext/jmol/PDBFileWithJmol.java
index
92dce36
..
7c14e32
100644
(file)
--- a/
src/jalview/ext/jmol/PDBFileWithJmol.java
+++ b/
src/jalview/ext/jmol/PDBFileWithJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/paradise/Annotate3D.java
b/src/jalview/ext/paradise/Annotate3D.java
index
3930fc0
..
66a3564
100644
(file)
--- a/
src/jalview/ext/paradise/Annotate3D.java
+++ b/
src/jalview/ext/paradise/Annotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
index
d3c8c09
..
b9957a6
100644
(file)
--- a/
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
+++ b/
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index
82f5e5c
..
9b9c239
100644
(file)
--- a/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/JalviewVarnaBinding.java
b/src/jalview/ext/varna/JalviewVarnaBinding.java
index
6a32f30
..
9edc385
100644
(file)
--- a/
src/jalview/ext/varna/JalviewVarnaBinding.java
+++ b/
src/jalview/ext/varna/JalviewVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ext/varna/VarnaCommands.java
b/src/jalview/ext/varna/VarnaCommands.java
index
4b5b15b
..
9d81947
100644
(file)
--- a/
src/jalview/ext/varna/VarnaCommands.java
+++ b/
src/jalview/ext/varna/VarnaCommands.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
50043e6
..
216db0e
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
d24f6c4
..
60430ed
100644
(file)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AlignmentPanel.java
b/src/jalview/gui/AlignmentPanel.java
index
2398bda
..
e1b5abb
100644
(file)
--- a/
src/jalview/gui/AlignmentPanel.java
+++ b/
src/jalview/gui/AlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationColourChooser.java
b/src/jalview/gui/AnnotationColourChooser.java
index
b8996b6
..
1f86d87
100644
(file)
--- a/
src/jalview/gui/AnnotationColourChooser.java
+++ b/
src/jalview/gui/AnnotationColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationExporter.java
b/src/jalview/gui/AnnotationExporter.java
index
315c3e2
..
17f43d9
100644
(file)
--- a/
src/jalview/gui/AnnotationExporter.java
+++ b/
src/jalview/gui/AnnotationExporter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
6e8417f
..
9c1db3d
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AnnotationPanel.java
b/src/jalview/gui/AnnotationPanel.java
index
9f56206
..
e020701
100755
(executable)
--- a/
src/jalview/gui/AnnotationPanel.java
+++ b/
src/jalview/gui/AnnotationPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
fcb31eb
..
41a4bf7
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppJmolBinding.java
b/src/jalview/gui/AppJmolBinding.java
index
7fa300e
..
2104399
100644
(file)
--- a/
src/jalview/gui/AppJmolBinding.java
+++ b/
src/jalview/gui/AppJmolBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarna.java
b/src/jalview/gui/AppVarna.java
index
4fe9ac2
..
014e6eb
100644
(file)
--- a/
src/jalview/gui/AppVarna.java
+++ b/
src/jalview/gui/AppVarna.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AppVarnaBinding.java
b/src/jalview/gui/AppVarnaBinding.java
index
a738a2c
..
9ba1d3d
100644
(file)
--- a/
src/jalview/gui/AppVarnaBinding.java
+++ b/
src/jalview/gui/AppVarnaBinding.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/AssociatePdbFileWithSeq.java
b/src/jalview/gui/AssociatePdbFileWithSeq.java
index
a854bdf
..
f13bb35
100644
(file)
--- a/
src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/
src/jalview/gui/AssociatePdbFileWithSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/BlogReader.java
b/src/jalview/gui/BlogReader.java
index
7d4399d
..
8dde5d9
100644
(file)
--- a/
src/jalview/gui/BlogReader.java
+++ b/
src/jalview/gui/BlogReader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ChimeraViewFrame.java
b/src/jalview/gui/ChimeraViewFrame.java
index
513659f
..
17b3ead
100644
(file)
--- a/
src/jalview/gui/ChimeraViewFrame.java
+++ b/
src/jalview/gui/ChimeraViewFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Console.java
b/src/jalview/gui/Console.java
index
ea7e539
..
f4fe876
100644
(file)
--- a/
src/jalview/gui/Console.java
+++ b/
src/jalview/gui/Console.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteHtmlTransfer.java
b/src/jalview/gui/CutAndPasteHtmlTransfer.java
index
7fd091f
..
d2eccea
100644
(file)
--- a/
src/jalview/gui/CutAndPasteHtmlTransfer.java
+++ b/
src/jalview/gui/CutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/CutAndPasteTransfer.java
b/src/jalview/gui/CutAndPasteTransfer.java
index
0c22b14
..
0ebb952
100644
(file)
--- a/
src/jalview/gui/CutAndPasteTransfer.java
+++ b/
src/jalview/gui/CutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/DasSourceBrowser.java
b/src/jalview/gui/DasSourceBrowser.java
index
779e82f
..
8d006b9
100644
(file)
--- a/
src/jalview/gui/DasSourceBrowser.java
+++ b/
src/jalview/gui/DasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Desktop.java
b/src/jalview/gui/Desktop.java
index
b8f629a
..
7407cba
100644
(file)
--- a/
src/jalview/gui/Desktop.java
+++ b/
src/jalview/gui/Desktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EPSOptions.java
b/src/jalview/gui/EPSOptions.java
index
8906569
..
d0dcf7c
100644
(file)
--- a/
src/jalview/gui/EPSOptions.java
+++ b/
src/jalview/gui/EPSOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/EditNameDialog.java
b/src/jalview/gui/EditNameDialog.java
index
8db5bb2
..
142fc24
100644
(file)
--- a/
src/jalview/gui/EditNameDialog.java
+++ b/
src/jalview/gui/EditNameDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureColourChooser.java
b/src/jalview/gui/FeatureColourChooser.java
index
8ab7c85
..
1565445
100644
(file)
--- a/
src/jalview/gui/FeatureColourChooser.java
+++ b/
src/jalview/gui/FeatureColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureRenderer.java
b/src/jalview/gui/FeatureRenderer.java
index
d2d9c9c
..
5a96ff5
100644
(file)
--- a/
src/jalview/gui/FeatureRenderer.java
+++ b/
src/jalview/gui/FeatureRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FeatureSettings.java
b/src/jalview/gui/FeatureSettings.java
index
2210148
..
413b88c
100644
(file)
--- a/
src/jalview/gui/FeatureSettings.java
+++ b/
src/jalview/gui/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Finder.java
b/src/jalview/gui/Finder.java
index
8eddc06
..
cc91ebf
100755
(executable)
--- a/
src/jalview/gui/Finder.java
+++ b/
src/jalview/gui/Finder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/FontChooser.java
b/src/jalview/gui/FontChooser.java
index
b6116d9
..
f01078c
100755
(executable)
--- a/
src/jalview/gui/FontChooser.java
+++ b/
src/jalview/gui/FontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicator.java
b/src/jalview/gui/IProgressIndicator.java
index
33f7cb1
..
a30d102
100644
(file)
--- a/
src/jalview/gui/IProgressIndicator.java
+++ b/
src/jalview/gui/IProgressIndicator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IProgressIndicatorHandler.java
b/src/jalview/gui/IProgressIndicatorHandler.java
index
297dc48
..
4cf9775
100644
(file)
--- a/
src/jalview/gui/IProgressIndicatorHandler.java
+++ b/
src/jalview/gui/IProgressIndicatorHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdCanvas.java
b/src/jalview/gui/IdCanvas.java
index
91b23e4
..
c4c12cb
100755
(executable)
--- a/
src/jalview/gui/IdCanvas.java
+++ b/
src/jalview/gui/IdCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdPanel.java
b/src/jalview/gui/IdPanel.java
index
6b1109a
..
deb1167
100755
(executable)
--- a/
src/jalview/gui/IdPanel.java
+++ b/
src/jalview/gui/IdPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/IdwidthAdjuster.java
b/src/jalview/gui/IdwidthAdjuster.java
index
0c53c58
..
5d77555
100755
(executable)
--- a/
src/jalview/gui/IdwidthAdjuster.java
+++ b/
src/jalview/gui/IdwidthAdjuster.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JDatabaseTree.java
b/src/jalview/gui/JDatabaseTree.java
index
030e78a
..
0f240d6
100644
(file)
--- a/
src/jalview/gui/JDatabaseTree.java
+++ b/
src/jalview/gui/JDatabaseTree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
cccf34d
..
f3854fe
100644
(file)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Jalview2XML_V1.java
b/src/jalview/gui/Jalview2XML_V1.java
index
9263cd9
..
9e4a8ec
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML_V1.java
+++ b/
src/jalview/gui/Jalview2XML_V1.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewAppender.java
b/src/jalview/gui/JalviewAppender.java
index
481fd34
..
1f03c4c
100644
(file)
--- a/
src/jalview/gui/JalviewAppender.java
+++ b/
src/jalview/gui/JalviewAppender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewChangeSupport.java
b/src/jalview/gui/JalviewChangeSupport.java
index
f764277
..
f2a1f1b
100644
(file)
--- a/
src/jalview/gui/JalviewChangeSupport.java
+++ b/
src/jalview/gui/JalviewChangeSupport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JalviewDialog.java
b/src/jalview/gui/JalviewDialog.java
index
1aee71e
..
af31a7b
100644
(file)
--- a/
src/jalview/gui/JalviewDialog.java
+++ b/
src/jalview/gui/JalviewDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/JvSwingUtils.java
b/src/jalview/gui/JvSwingUtils.java
index
e433243
..
f38407b
100644
(file)
--- a/
src/jalview/gui/JvSwingUtils.java
+++ b/
src/jalview/gui/JvSwingUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/MenuChooser.java
b/src/jalview/gui/MenuChooser.java
index
d09c5a5
..
92d0940
100644
(file)
--- a/
src/jalview/gui/MenuChooser.java
+++ b/
src/jalview/gui/MenuChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OOMWarning.java
b/src/jalview/gui/OOMWarning.java
index
a9347eb
..
2a94235
100644
(file)
--- a/
src/jalview/gui/OOMWarning.java
+++ b/
src/jalview/gui/OOMWarning.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsAndParamsPage.java
b/src/jalview/gui/OptsAndParamsPage.java
index
d2f04a1
..
a9accaf
100644
(file)
--- a/
src/jalview/gui/OptsAndParamsPage.java
+++ b/
src/jalview/gui/OptsAndParamsPage.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OptsParametersContainerI.java
b/src/jalview/gui/OptsParametersContainerI.java
index
ad50b5a
..
03c5625
100644
(file)
--- a/
src/jalview/gui/OptsParametersContainerI.java
+++ b/
src/jalview/gui/OptsParametersContainerI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/OverviewPanel.java
b/src/jalview/gui/OverviewPanel.java
index
e8555f7
..
997491e
100755
(executable)
--- a/
src/jalview/gui/OverviewPanel.java
+++ b/
src/jalview/gui/OverviewPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
d2d6a98
..
b0d512e
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PaintRefresher.java
b/src/jalview/gui/PaintRefresher.java
index
01dfa3b
..
623b800
100755
(executable)
--- a/
src/jalview/gui/PaintRefresher.java
+++ b/
src/jalview/gui/PaintRefresher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PairwiseAlignPanel.java
b/src/jalview/gui/PairwiseAlignPanel.java
index
bc2c27c
..
65e1744
100755
(executable)
--- a/
src/jalview/gui/PairwiseAlignPanel.java
+++ b/
src/jalview/gui/PairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
c2bee83
..
957ca46
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
bdc83e5
..
ee03164
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/PromptUserConfig.java
b/src/jalview/gui/PromptUserConfig.java
index
937d741
..
bff32fa
100644
(file)
--- a/
src/jalview/gui/PromptUserConfig.java
+++ b/
src/jalview/gui/PromptUserConfig.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RedundancyPanel.java
b/src/jalview/gui/RedundancyPanel.java
index
ab0a0b8
..
44583ba
100755
(executable)
--- a/
src/jalview/gui/RedundancyPanel.java
+++ b/
src/jalview/gui/RedundancyPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestInputParamEditDialog.java
b/src/jalview/gui/RestInputParamEditDialog.java
index
508c55c
..
6e3d9c1
100644
(file)
--- a/
src/jalview/gui/RestInputParamEditDialog.java
+++ b/
src/jalview/gui/RestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RestServiceEditorPane.java
b/src/jalview/gui/RestServiceEditorPane.java
index
191e420
..
4dafc75
100644
(file)
--- a/
src/jalview/gui/RestServiceEditorPane.java
+++ b/
src/jalview/gui/RestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/RotatableCanvas.java
b/src/jalview/gui/RotatableCanvas.java
index
1ff78b4
..
573f59e
100755
(executable)
--- a/
src/jalview/gui/RotatableCanvas.java
+++ b/
src/jalview/gui/RotatableCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SVGOptions.java
b/src/jalview/gui/SVGOptions.java
index
b5e194b
..
4f34e3b
100644
(file)
--- a/
src/jalview/gui/SVGOptions.java
+++ b/
src/jalview/gui/SVGOptions.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScalePanel.java
b/src/jalview/gui/ScalePanel.java
index
f2c5154
..
97a9c62
100755
(executable)
--- a/
src/jalview/gui/ScalePanel.java
+++ b/
src/jalview/gui/ScalePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ScriptWindow.java
b/src/jalview/gui/ScriptWindow.java
index
d935eb7
..
f329b00
100644
(file)
--- a/
src/jalview/gui/ScriptWindow.java
+++ b/
src/jalview/gui/ScriptWindow.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqCanvas.java
b/src/jalview/gui/SeqCanvas.java
index
d73ee70
..
d5dd927
100755
(executable)
--- a/
src/jalview/gui/SeqCanvas.java
+++ b/
src/jalview/gui/SeqCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SeqPanel.java
b/src/jalview/gui/SeqPanel.java
index
c10a4a9
..
14274e2
100644
(file)
--- a/
src/jalview/gui/SeqPanel.java
+++ b/
src/jalview/gui/SeqPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceFetcher.java
b/src/jalview/gui/SequenceFetcher.java
index
35bc29a
..
71348ef
100755
(executable)
--- a/
src/jalview/gui/SequenceFetcher.java
+++ b/
src/jalview/gui/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
bcbebbd
..
7e39a8c
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SliderPanel.java
b/src/jalview/gui/SliderPanel.java
index
81b3bd3
..
6a8c63b
100755
(executable)
--- a/
src/jalview/gui/SliderPanel.java
+++ b/
src/jalview/gui/SliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/SplashScreen.java
b/src/jalview/gui/SplashScreen.java
index
14e1a0e
..
b24d6f8
100755
(executable)
--- a/
src/jalview/gui/SplashScreen.java
+++ b/
src/jalview/gui/SplashScreen.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/StructureViewer.java
b/src/jalview/gui/StructureViewer.java
index
22f12ea
..
6b6fde4
100644
(file)
--- a/
src/jalview/gui/StructureViewer.java
+++ b/
src/jalview/gui/StructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TextColourChooser.java
b/src/jalview/gui/TextColourChooser.java
index
4315e0b
..
7cc5c63
100644
(file)
--- a/
src/jalview/gui/TextColourChooser.java
+++ b/
src/jalview/gui/TextColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreeCanvas.java
b/src/jalview/gui/TreeCanvas.java
index
c5650f5
..
9660f82
100755
(executable)
--- a/
src/jalview/gui/TreeCanvas.java
+++ b/
src/jalview/gui/TreeCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
ee0bfaf
..
e67365e
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserDefinedColours.java
b/src/jalview/gui/UserDefinedColours.java
index
37824fe
..
f33445b
100755
(executable)
--- a/
src/jalview/gui/UserDefinedColours.java
+++ b/
src/jalview/gui/UserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/UserQuestionnaireCheck.java
b/src/jalview/gui/UserQuestionnaireCheck.java
index
315dd66
..
46f5b00
100644
(file)
--- a/
src/jalview/gui/UserQuestionnaireCheck.java
+++ b/
src/jalview/gui/UserQuestionnaireCheck.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/VamsasApplication.java
b/src/jalview/gui/VamsasApplication.java
index
77a7693
..
6daaf68
100644
(file)
--- a/
src/jalview/gui/VamsasApplication.java
+++ b/
src/jalview/gui/VamsasApplication.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/ViewSelectionMenu.java
b/src/jalview/gui/ViewSelectionMenu.java
index
164f975
..
bfef2be
100644
(file)
--- a/
src/jalview/gui/ViewSelectionMenu.java
+++ b/
src/jalview/gui/ViewSelectionMenu.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WebserviceInfo.java
b/src/jalview/gui/WebserviceInfo.java
index
cd93277
..
79cc469
100644
(file)
--- a/
src/jalview/gui/WebserviceInfo.java
+++ b/
src/jalview/gui/WebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsJobParameters.java
b/src/jalview/gui/WsJobParameters.java
index
4a74c9c
..
fd33a53
100644
(file)
--- a/
src/jalview/gui/WsJobParameters.java
+++ b/
src/jalview/gui/WsJobParameters.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsParamSetManager.java
b/src/jalview/gui/WsParamSetManager.java
index
2db19a2
..
8f7757d
100644
(file)
--- a/
src/jalview/gui/WsParamSetManager.java
+++ b/
src/jalview/gui/WsParamSetManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/gui/WsPreferences.java
b/src/jalview/gui/WsPreferences.java
index
527750c
..
d92cddb
100644
(file)
--- a/
src/jalview/gui/WsPreferences.java
+++ b/
src/jalview/gui/WsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AMSAFile.java
b/src/jalview/io/AMSAFile.java
index
b51daa5
..
db1b7cb
100644
(file)
--- a/
src/jalview/io/AMSAFile.java
+++ b/
src/jalview/io/AMSAFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignFile.java
b/src/jalview/io/AlignFile.java
index
af835ca
..
661ebae
100755
(executable)
--- a/
src/jalview/io/AlignFile.java
+++ b/
src/jalview/io/AlignFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AlignmentProperties.java
b/src/jalview/io/AlignmentProperties.java
index
9f33fb4
..
88e3814
100644
(file)
--- a/
src/jalview/io/AlignmentProperties.java
+++ b/
src/jalview/io/AlignmentProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AnnotationFile.java
b/src/jalview/io/AnnotationFile.java
index
7736332
..
f66b3da
100755
(executable)
--- a/
src/jalview/io/AnnotationFile.java
+++ b/
src/jalview/io/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/AppletFormatAdapter.java
b/src/jalview/io/AppletFormatAdapter.java
index
d3b19fa
..
81783fc
100755
(executable)
--- a/
src/jalview/io/AppletFormatAdapter.java
+++ b/
src/jalview/io/AppletFormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/BLCFile.java
b/src/jalview/io/BLCFile.java
index
66f9d8e
..
6138057
100755
(executable)
--- a/
src/jalview/io/BLCFile.java
+++ b/
src/jalview/io/BLCFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClansFile.java
b/src/jalview/io/ClansFile.java
index
7c8fb9b
..
e6f7cf0
100644
(file)
--- a/
src/jalview/io/ClansFile.java
+++ b/
src/jalview/io/ClansFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ClustalFile.java
b/src/jalview/io/ClustalFile.java
index
34f25dd
..
3102f9c
100755
(executable)
--- a/
src/jalview/io/ClustalFile.java
+++ b/
src/jalview/io/ClustalFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/DBRefFile.java
b/src/jalview/io/DBRefFile.java
index
39c3143
..
7619e96
100644
(file)
--- a/
src/jalview/io/DBRefFile.java
+++ b/
src/jalview/io/DBRefFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FastaFile.java
b/src/jalview/io/FastaFile.java
index
6e5de81
..
9f3793c
100755
(executable)
--- a/
src/jalview/io/FastaFile.java
+++ b/
src/jalview/io/FastaFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
87b829f
..
11135b7
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileLoader.java
b/src/jalview/io/FileLoader.java
index
82b94c3
..
f22d93a
100755
(executable)
--- a/
src/jalview/io/FileLoader.java
+++ b/
src/jalview/io/FileLoader.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FileParse.java
b/src/jalview/io/FileParse.java
index
8e9a49c
..
b6f94fd
100755
(executable)
--- a/
src/jalview/io/FileParse.java
+++ b/
src/jalview/io/FileParse.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/FormatAdapter.java
b/src/jalview/io/FormatAdapter.java
index
8ca0c35
..
ccabbb3
100755
(executable)
--- a/
src/jalview/io/FormatAdapter.java
+++ b/
src/jalview/io/FormatAdapter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
50b07e4
..
237b6a9
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/IdentifyFile.java
b/src/jalview/io/IdentifyFile.java
index
9c7478b
..
beb1385
100755
(executable)
--- a/
src/jalview/io/IdentifyFile.java
+++ b/
src/jalview/io/IdentifyFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/InputStreamParser.java
b/src/jalview/io/InputStreamParser.java
index
b5b5671
..
c609e78
100644
(file)
--- a/
src/jalview/io/InputStreamParser.java
+++ b/
src/jalview/io/InputStreamParser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JPredFile.java
b/src/jalview/io/JPredFile.java
index
ca74f2c
..
abd44c0
100755
(executable)
--- a/
src/jalview/io/JPredFile.java
+++ b/
src/jalview/io/JPredFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileChooser.java
b/src/jalview/io/JalviewFileChooser.java
index
df8decf
..
d14fa50
100755
(executable)
--- a/
src/jalview/io/JalviewFileChooser.java
+++ b/
src/jalview/io/JalviewFileChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileFilter.java
b/src/jalview/io/JalviewFileFilter.java
index
2a8f078
..
0d2d4bf
100755
(executable)
--- a/
src/jalview/io/JalviewFileFilter.java
+++ b/
src/jalview/io/JalviewFileFilter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JalviewFileView.java
b/src/jalview/io/JalviewFileView.java
index
65581c3
..
93fc04a
100755
(executable)
--- a/
src/jalview/io/JalviewFileView.java
+++ b/
src/jalview/io/JalviewFileView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/JnetAnnotationMaker.java
b/src/jalview/io/JnetAnnotationMaker.java
index
5c95a3f
..
c2e3b4a
100755
(executable)
--- a/
src/jalview/io/JnetAnnotationMaker.java
+++ b/
src/jalview/io/JnetAnnotationMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
05765e3
..
febf6ff
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/MatrixFile.java
b/src/jalview/io/MatrixFile.java
index
09077d2
..
f028d6a
100644
(file)
--- a/
src/jalview/io/MatrixFile.java
+++ b/
src/jalview/io/MatrixFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/ModellerDescription.java
b/src/jalview/io/ModellerDescription.java
index
b0371f9
..
cc9b966
100755
(executable)
--- a/
src/jalview/io/ModellerDescription.java
+++ b/
src/jalview/io/ModellerDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/NewickFile.java
b/src/jalview/io/NewickFile.java
index
f2a29ea
..
ab76ab9
100755
(executable)
--- a/
src/jalview/io/NewickFile.java
+++ b/
src/jalview/io/NewickFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PIRFile.java
b/src/jalview/io/PIRFile.java
index
28f553a
..
dfa612e
100755
(executable)
--- a/
src/jalview/io/PIRFile.java
+++ b/
src/jalview/io/PIRFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PfamFile.java
b/src/jalview/io/PfamFile.java
index
7d4baa2
..
85588a6
100755
(executable)
--- a/
src/jalview/io/PfamFile.java
+++ b/
src/jalview/io/PfamFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/PileUpfile.java
b/src/jalview/io/PileUpfile.java
index
2a902b4
..
64905f0
100755
(executable)
--- a/
src/jalview/io/PileUpfile.java
+++ b/
src/jalview/io/PileUpfile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/RnamlFile.java
b/src/jalview/io/RnamlFile.java
index
c075fda
..
d743c7d
100644
(file)
--- a/
src/jalview/io/RnamlFile.java
+++ b/
src/jalview/io/RnamlFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SequenceAnnotationReport.java
b/src/jalview/io/SequenceAnnotationReport.java
index
6fba9c6
..
62a793e
100644
(file)
--- a/
src/jalview/io/SequenceAnnotationReport.java
+++ b/
src/jalview/io/SequenceAnnotationReport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/SimpleBlastFile.java
b/src/jalview/io/SimpleBlastFile.java
index
d0bf651
..
35a498c
100644
(file)
--- a/
src/jalview/io/SimpleBlastFile.java
+++ b/
src/jalview/io/SimpleBlastFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/StockholmFile.java
b/src/jalview/io/StockholmFile.java
index
3b9fb00
..
76b83ba
100644
(file)
--- a/
src/jalview/io/StockholmFile.java
+++ b/
src/jalview/io/StockholmFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/TCoffeeScoreFile.java
b/src/jalview/io/TCoffeeScoreFile.java
index
d437bd8
..
fce7fc5
100644
(file)
--- a/
src/jalview/io/TCoffeeScoreFile.java
+++ b/
src/jalview/io/TCoffeeScoreFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
6293a1b
..
2ec7fde
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/WSWUBlastClient.java
b/src/jalview/io/WSWUBlastClient.java
index
4f0d802
..
41b8f94
100755
(executable)
--- a/
src/jalview/io/WSWUBlastClient.java
+++ b/
src/jalview/io/WSWUBlastClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/DataProvider.java
b/src/jalview/io/packed/DataProvider.java
index
95b434f
..
306fbc1
100644
(file)
--- a/
src/jalview/io/packed/DataProvider.java
+++ b/
src/jalview/io/packed/DataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/JalviewDataset.java
b/src/jalview/io/packed/JalviewDataset.java
index
69cefce
..
676777b
100644
(file)
--- a/
src/jalview/io/packed/JalviewDataset.java
+++ b/
src/jalview/io/packed/JalviewDataset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/ParsePackedSet.java
b/src/jalview/io/packed/ParsePackedSet.java
index
df1acf1
..
ef221ba
100644
(file)
--- a/
src/jalview/io/packed/ParsePackedSet.java
+++ b/
src/jalview/io/packed/ParsePackedSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/packed/SimpleDataProvider.java
b/src/jalview/io/packed/SimpleDataProvider.java
index
1a1a24f
..
584ffb9
100644
(file)
--- a/
src/jalview/io/packed/SimpleDataProvider.java
+++ b/
src/jalview/io/packed/SimpleDataProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Datasetsequence.java
b/src/jalview/io/vamsas/Datasetsequence.java
index
6b449ee
..
4c061fa
100644
(file)
--- a/
src/jalview/io/vamsas/Datasetsequence.java
+++ b/
src/jalview/io/vamsas/Datasetsequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreItem.java
b/src/jalview/io/vamsas/DatastoreItem.java
index
2a070e8
..
f595ff4
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreItem.java
+++ b/
src/jalview/io/vamsas/DatastoreItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/DatastoreRegistry.java
b/src/jalview/io/vamsas/DatastoreRegistry.java
index
732af96
..
436a811
100644
(file)
--- a/
src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/
src/jalview/io/vamsas/DatastoreRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Dbref.java
b/src/jalview/io/vamsas/Dbref.java
index
66560b1
..
0754964
100644
(file)
--- a/
src/jalview/io/vamsas/Dbref.java
+++ b/
src/jalview/io/vamsas/Dbref.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/LocalDocSyncObject.java
b/src/jalview/io/vamsas/LocalDocSyncObject.java
index
030793d
..
69d162f
100644
(file)
--- a/
src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/
src/jalview/io/vamsas/LocalDocSyncObject.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Rangetype.java
b/src/jalview/io/vamsas/Rangetype.java
index
3cc977f
..
a83a34f
100644
(file)
--- a/
src/jalview/io/vamsas/Rangetype.java
+++ b/
src/jalview/io/vamsas/Rangetype.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencefeature.java
b/src/jalview/io/vamsas/Sequencefeature.java
index
4eef152
..
8c3ab99
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencefeature.java
+++ b/
src/jalview/io/vamsas/Sequencefeature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
3878a0a
..
550d0ff
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/io/vamsas/Tree.java
b/src/jalview/io/vamsas/Tree.java
index
dbfaf37
..
e56fa3f
100644
(file)
--- a/
src/jalview/io/vamsas/Tree.java
+++ b/
src/jalview/io/vamsas/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JSFunctionExec.java
b/src/jalview/javascript/JSFunctionExec.java
index
788b28f
..
5081176
100644
(file)
--- a/
src/jalview/javascript/JSFunctionExec.java
+++ b/
src/jalview/javascript/JSFunctionExec.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JalviewLiteJsApi.java
b/src/jalview/javascript/JalviewLiteJsApi.java
index
e200280
..
af1b975
100644
(file)
--- a/
src/jalview/javascript/JalviewLiteJsApi.java
+++ b/
src/jalview/javascript/JalviewLiteJsApi.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsCallBack.java
b/src/jalview/javascript/JsCallBack.java
index
16c01a6
..
3f1c446
100644
(file)
--- a/
src/jalview/javascript/JsCallBack.java
+++ b/
src/jalview/javascript/JsCallBack.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/JsSelectionSender.java
b/src/jalview/javascript/JsSelectionSender.java
index
d9e1b98
..
6302ef2
100644
(file)
--- a/
src/jalview/javascript/JsSelectionSender.java
+++ b/
src/jalview/javascript/JsSelectionSender.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverListener.java
b/src/jalview/javascript/MouseOverListener.java
index
19f7b11
..
2f91816
100644
(file)
--- a/
src/jalview/javascript/MouseOverListener.java
+++ b/
src/jalview/javascript/MouseOverListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/javascript/MouseOverStructureListener.java
b/src/jalview/javascript/MouseOverStructureListener.java
index
465a672
..
4164f20
100644
(file)
--- a/
src/jalview/javascript/MouseOverStructureListener.java
+++ b/
src/jalview/javascript/MouseOverStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignFrame.java
b/src/jalview/jbgui/GAlignFrame.java
index
387bb7f
..
e546608
100755
(executable)
--- a/
src/jalview/jbgui/GAlignFrame.java
+++ b/
src/jalview/jbgui/GAlignFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GAlignmentPanel.java
b/src/jalview/jbgui/GAlignmentPanel.java
index
370d016
..
c74ef68
100755
(executable)
--- a/
src/jalview/jbgui/GAlignmentPanel.java
+++ b/
src/jalview/jbgui/GAlignmentPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
index
bc05d8c
..
2068529
100644
(file)
--- a/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GCutAndPasteTransfer.java
b/src/jalview/jbgui/GCutAndPasteTransfer.java
index
0a48d7e
..
0c2b05c
100755
(executable)
--- a/
src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/
src/jalview/jbgui/GCutAndPasteTransfer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDasSourceBrowser.java
b/src/jalview/jbgui/GDasSourceBrowser.java
index
185ce13
..
3fd42d4
100755
(executable)
--- a/
src/jalview/jbgui/GDasSourceBrowser.java
+++ b/
src/jalview/jbgui/GDasSourceBrowser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GDesktop.java
b/src/jalview/jbgui/GDesktop.java
index
97ec9fe
..
74c0a2e
100755
(executable)
--- a/
src/jalview/jbgui/GDesktop.java
+++ b/
src/jalview/jbgui/GDesktop.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFinder.java
b/src/jalview/jbgui/GFinder.java
index
7705259
..
c529728
100755
(executable)
--- a/
src/jalview/jbgui/GFinder.java
+++ b/
src/jalview/jbgui/GFinder.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GFontChooser.java
b/src/jalview/jbgui/GFontChooser.java
index
17ed4ad
..
dd7d7e2
100755
(executable)
--- a/
src/jalview/jbgui/GFontChooser.java
+++ b/
src/jalview/jbgui/GFontChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPCAPanel.java
b/src/jalview/jbgui/GPCAPanel.java
index
ed2dc7d
..
d63fd54
100755
(executable)
--- a/
src/jalview/jbgui/GPCAPanel.java
+++ b/
src/jalview/jbgui/GPCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPairwiseAlignPanel.java
b/src/jalview/jbgui/GPairwiseAlignPanel.java
index
aa88a92
..
04aeb5d
100755
(executable)
--- a/
src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/
src/jalview/jbgui/GPairwiseAlignPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GPreferences.java
b/src/jalview/jbgui/GPreferences.java
index
610f32e
..
26bd0cc
100755
(executable)
--- a/
src/jalview/jbgui/GPreferences.java
+++ b/
src/jalview/jbgui/GPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestInputParamEditDialog.java
b/src/jalview/jbgui/GRestInputParamEditDialog.java
index
f91d8b2
..
89be170
100644
(file)
--- a/
src/jalview/jbgui/GRestInputParamEditDialog.java
+++ b/
src/jalview/jbgui/GRestInputParamEditDialog.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRestServiceEditorPane.java
b/src/jalview/jbgui/GRestServiceEditorPane.java
index
7a04248
..
ba8032a
100644
(file)
--- a/
src/jalview/jbgui/GRestServiceEditorPane.java
+++ b/
src/jalview/jbgui/GRestServiceEditorPane.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GRnaStructureViewer.java
b/src/jalview/jbgui/GRnaStructureViewer.java
index
90fd530
..
44a2998
100644
(file)
--- a/
src/jalview/jbgui/GRnaStructureViewer.java
+++ b/
src/jalview/jbgui/GRnaStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSequenceLink.java
b/src/jalview/jbgui/GSequenceLink.java
index
3e6f91a
..
0616c79
100755
(executable)
--- a/
src/jalview/jbgui/GSequenceLink.java
+++ b/
src/jalview/jbgui/GSequenceLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GSliderPanel.java
b/src/jalview/jbgui/GSliderPanel.java
index
b11fb7f
..
e829f43
100755
(executable)
--- a/
src/jalview/jbgui/GSliderPanel.java
+++ b/
src/jalview/jbgui/GSliderPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GStructureViewer.java
b/src/jalview/jbgui/GStructureViewer.java
index
58b2eb1
..
904d75c
100644
(file)
--- a/
src/jalview/jbgui/GStructureViewer.java
+++ b/
src/jalview/jbgui/GStructureViewer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GTreePanel.java
b/src/jalview/jbgui/GTreePanel.java
index
b492c21
..
482060a
100755
(executable)
--- a/
src/jalview/jbgui/GTreePanel.java
+++ b/
src/jalview/jbgui/GTreePanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GUserDefinedColours.java
b/src/jalview/jbgui/GUserDefinedColours.java
index
7a485fd
..
061b814
100755
(executable)
--- a/
src/jalview/jbgui/GUserDefinedColours.java
+++ b/
src/jalview/jbgui/GUserDefinedColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWebserviceInfo.java
b/src/jalview/jbgui/GWebserviceInfo.java
index
910768e
..
e012ca5
100755
(executable)
--- a/
src/jalview/jbgui/GWebserviceInfo.java
+++ b/
src/jalview/jbgui/GWebserviceInfo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/jbgui/GWsPreferences.java
b/src/jalview/jbgui/GWsPreferences.java
index
ff171c9
..
30b4883
100644
(file)
--- a/
src/jalview/jbgui/GWsPreferences.java
+++ b/
src/jalview/jbgui/GWsPreferences.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/Matrix.java
b/src/jalview/math/Matrix.java
index
acd83a8
..
a549520
100755
(executable)
--- a/
src/jalview/math/Matrix.java
+++ b/
src/jalview/math/Matrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/math/RotatableMatrix.java
b/src/jalview/math/RotatableMatrix.java
index
179c790
..
4aa9f66
100755
(executable)
--- a/
src/jalview/math/RotatableMatrix.java
+++ b/
src/jalview/math/RotatableMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AnnotationRenderer.java
b/src/jalview/renderer/AnnotationRenderer.java
index
d5b2f49
..
b48d83f
100644
(file)
--- a/
src/jalview/renderer/AnnotationRenderer.java
+++ b/
src/jalview/renderer/AnnotationRenderer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/renderer/AwtRenderPanelI.java
b/src/jalview/renderer/AwtRenderPanelI.java
index
ab601da
..
99d670c
100644
(file)
--- a/
src/jalview/renderer/AwtRenderPanelI.java
+++ b/
src/jalview/renderer/AwtRenderPanelI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AlcodMap.java
b/src/jalview/schemabinding/version2/AlcodMap.java
index
a28c76a
..
e16eef6
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodMap.java
+++ b/
src/jalview/schemabinding/version2/AlcodMap.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Alcodon.java
b/src/jalview/schemabinding/version2/Alcodon.java
index
ea0d410
..
c953653
100644
(file)
--- a/
src/jalview/schemabinding/version2/Alcodon.java
+++ b/
src/jalview/schemabinding/version2/Alcodon.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AlcodonFrame.java
b/src/jalview/schemabinding/version2/AlcodonFrame.java
index
c7d2f17
..
a931087
100644
(file)
--- a/
src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/
src/jalview/schemabinding/version2/AlcodonFrame.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationColourScheme.java
b/src/jalview/schemabinding/version2/AnnotationColourScheme.java
index
6167df8
..
6fec1bb
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationColourScheme.java
+++ b/
src/jalview/schemabinding/version2/AnnotationColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationColours.java
b/src/jalview/schemabinding/version2/AnnotationColours.java
index
586c695
..
455d96d
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/
src/jalview/schemabinding/version2/AnnotationColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/AnnotationElement.java
b/src/jalview/schemabinding/version2/AnnotationElement.java
index
5d85349
..
4487094
100644
(file)
--- a/
src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/
src/jalview/schemabinding/version2/AnnotationElement.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/CalcIdParam.java
b/src/jalview/schemabinding/version2/CalcIdParam.java
index
079e83f
..
c88f117
100644
(file)
--- a/
src/jalview/schemabinding/version2/CalcIdParam.java
+++ b/
src/jalview/schemabinding/version2/CalcIdParam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Colour.java
b/src/jalview/schemabinding/version2/Colour.java
index
a0d242b
..
0a461e8
100644
(file)
--- a/
src/jalview/schemabinding/version2/Colour.java
+++ b/
src/jalview/schemabinding/version2/Colour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/DBRef.java
b/src/jalview/schemabinding/version2/DBRef.java
index
4443606
..
24f0d13
100644
(file)
--- a/
src/jalview/schemabinding/version2/DBRef.java
+++ b/
src/jalview/schemabinding/version2/DBRef.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Feature.java
b/src/jalview/schemabinding/version2/Feature.java
index
bbc5f67
..
d5c8e84
100644
(file)
--- a/
src/jalview/schemabinding/version2/Feature.java
+++ b/
src/jalview/schemabinding/version2/Feature.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/FeatureSettings.java
b/src/jalview/schemabinding/version2/FeatureSettings.java
index
14d9844
..
be6c20a
100644
(file)
--- a/
src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/
src/jalview/schemabinding/version2/FeatureSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Features.java
b/src/jalview/schemabinding/version2/Features.java
index
e482625
..
1fd03f1
100644
(file)
--- a/
src/jalview/schemabinding/version2/Features.java
+++ b/
src/jalview/schemabinding/version2/Features.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Group.java
b/src/jalview/schemabinding/version2/Group.java
index
713acae
..
948fd2b
100644
(file)
--- a/
src/jalview/schemabinding/version2/Group.java
+++ b/
src/jalview/schemabinding/version2/Group.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/HiddenColumns.java
b/src/jalview/schemabinding/version2/HiddenColumns.java
index
68ce92c
..
c93914c
100644
(file)
--- a/
src/jalview/schemabinding/version2/HiddenColumns.java
+++ b/
src/jalview/schemabinding/version2/HiddenColumns.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JGroup.java
b/src/jalview/schemabinding/version2/JGroup.java
index
3a8dab2
..
523115f
100644
(file)
--- a/
src/jalview/schemabinding/version2/JGroup.java
+++ b/
src/jalview/schemabinding/version2/JGroup.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JSeq.java
b/src/jalview/schemabinding/version2/JSeq.java
index
31a128e
..
cb2f51d
100644
(file)
--- a/
src/jalview/schemabinding/version2/JSeq.java
+++ b/
src/jalview/schemabinding/version2/JSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewModel.java
b/src/jalview/schemabinding/version2/JalviewModel.java
index
b4c35c1
..
1e2c474
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewModel.java
+++ b/
src/jalview/schemabinding/version2/JalviewModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewModelSequence.java
b/src/jalview/schemabinding/version2/JalviewModelSequence.java
index
790a1ca
..
9328e15
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/
src/jalview/schemabinding/version2/JalviewModelSequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/JalviewUserColours.java
b/src/jalview/schemabinding/version2/JalviewUserColours.java
index
e6ced25
..
fd23c5b
100644
(file)
--- a/
src/jalview/schemabinding/version2/JalviewUserColours.java
+++ b/
src/jalview/schemabinding/version2/JalviewUserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListFrom.java
b/src/jalview/schemabinding/version2/MapListFrom.java
index
d9986c7
..
b0ee7a5
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListFrom.java
+++ b/
src/jalview/schemabinding/version2/MapListFrom.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListTo.java
b/src/jalview/schemabinding/version2/MapListTo.java
index
a66d8d4
..
d1c5af8
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListTo.java
+++ b/
src/jalview/schemabinding/version2/MapListTo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MapListType.java
b/src/jalview/schemabinding/version2/MapListType.java
index
32e8ce2
..
ea0e5c9
100644
(file)
--- a/
src/jalview/schemabinding/version2/MapListType.java
+++ b/
src/jalview/schemabinding/version2/MapListType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Mapping.java
b/src/jalview/schemabinding/version2/Mapping.java
index
255fc3e
..
02d9756
100644
(file)
--- a/
src/jalview/schemabinding/version2/Mapping.java
+++ b/
src/jalview/schemabinding/version2/Mapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/MappingChoice.java
b/src/jalview/schemabinding/version2/MappingChoice.java
index
ee7ae0f
..
a93a14a
100644
(file)
--- a/
src/jalview/schemabinding/version2/MappingChoice.java
+++ b/
src/jalview/schemabinding/version2/MappingChoice.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/OtherData.java
b/src/jalview/schemabinding/version2/OtherData.java
index
24b6b11
..
1f8973d
100644
(file)
--- a/
src/jalview/schemabinding/version2/OtherData.java
+++ b/
src/jalview/schemabinding/version2/OtherData.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Pdbentry.java
b/src/jalview/schemabinding/version2/Pdbentry.java
index
a558e12
..
b76a8e6
100644
(file)
--- a/
src/jalview/schemabinding/version2/Pdbentry.java
+++ b/
src/jalview/schemabinding/version2/Pdbentry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/PdbentryItem.java
b/src/jalview/schemabinding/version2/PdbentryItem.java
index
b1bbf11
..
4b50a7e
100644
(file)
--- a/
src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/
src/jalview/schemabinding/version2/PdbentryItem.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Pdbids.java
b/src/jalview/schemabinding/version2/Pdbids.java
index
bf700f9
..
d2fbb35
100644
(file)
--- a/
src/jalview/schemabinding/version2/Pdbids.java
+++ b/
src/jalview/schemabinding/version2/Pdbids.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Sequence.java
b/src/jalview/schemabinding/version2/Sequence.java
index
54f2e30
..
faea008
100644
(file)
--- a/
src/jalview/schemabinding/version2/Sequence.java
+++ b/
src/jalview/schemabinding/version2/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceSet.java
b/src/jalview/schemabinding/version2/SequenceSet.java
index
d058ad5
..
347df4a
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceSet.java
+++ b/
src/jalview/schemabinding/version2/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceSetProperties.java
b/src/jalview/schemabinding/version2/SequenceSetProperties.java
index
4924a5c
..
3a957a0
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceSetProperties.java
+++ b/
src/jalview/schemabinding/version2/SequenceSetProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/SequenceType.java
b/src/jalview/schemabinding/version2/SequenceType.java
index
209c03a
..
a7b6a93
100644
(file)
--- a/
src/jalview/schemabinding/version2/SequenceType.java
+++ b/
src/jalview/schemabinding/version2/SequenceType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Setting.java
b/src/jalview/schemabinding/version2/Setting.java
index
d20ec15
..
bf942b9
100644
(file)
--- a/
src/jalview/schemabinding/version2/Setting.java
+++ b/
src/jalview/schemabinding/version2/Setting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/StructureState.java
b/src/jalview/schemabinding/version2/StructureState.java
index
92fb2f7
..
25e7fdf
100644
(file)
--- a/
src/jalview/schemabinding/version2/StructureState.java
+++ b/
src/jalview/schemabinding/version2/StructureState.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/ThresholdLine.java
b/src/jalview/schemabinding/version2/ThresholdLine.java
index
f5dab4d
..
16087c6
100644
(file)
--- a/
src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/
src/jalview/schemabinding/version2/ThresholdLine.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Tree.java
b/src/jalview/schemabinding/version2/Tree.java
index
175c852
..
aafef57
100644
(file)
--- a/
src/jalview/schemabinding/version2/Tree.java
+++ b/
src/jalview/schemabinding/version2/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/UserColourScheme.java
b/src/jalview/schemabinding/version2/UserColourScheme.java
index
55c0024
..
e1c1118
100644
(file)
--- a/
src/jalview/schemabinding/version2/UserColourScheme.java
+++ b/
src/jalview/schemabinding/version2/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/UserColours.java
b/src/jalview/schemabinding/version2/UserColours.java
index
76f0ad9
..
a0e34f5
100644
(file)
--- a/
src/jalview/schemabinding/version2/UserColours.java
+++ b/
src/jalview/schemabinding/version2/UserColours.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/VAMSAS.java
b/src/jalview/schemabinding/version2/VAMSAS.java
index
7f0c216
..
2f60489
100644
(file)
--- a/
src/jalview/schemabinding/version2/VAMSAS.java
+++ b/
src/jalview/schemabinding/version2/VAMSAS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/VamsasModel.java
b/src/jalview/schemabinding/version2/VamsasModel.java
index
f0228a0
..
431e74b
100644
(file)
--- a/
src/jalview/schemabinding/version2/VamsasModel.java
+++ b/
src/jalview/schemabinding/version2/VamsasModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/Viewport.java
b/src/jalview/schemabinding/version2/Viewport.java
index
1faf480
..
c9099f9
100644
(file)
--- a/
src/jalview/schemabinding/version2/Viewport.java
+++ b/
src/jalview/schemabinding/version2/Viewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/WebServiceParameterSet.java
b/src/jalview/schemabinding/version2/WebServiceParameterSet.java
index
822a175
..
fe613bd
100644
(file)
--- a/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
+++ b/
src/jalview/schemabinding/version2/WebServiceParameterSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
index
6601bfa
..
5d7446b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
index
79c9abe
..
c3c267f
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
index
2557a6a
..
47a3a19
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
index
ee5b714
..
953a82a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
index
d0ff7b8
..
f7ca431
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
index
e401d8e
..
723820e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
index
7c71cef
..
24ccbcf
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
index
c87e9de
..
53a985c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
index
4f384b1
..
ad1a0ee
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
index
7399831
..
c99ad71
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
index
ebad366
..
140589a
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
index
9ff05db
..
73e6f2b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
index
316777b
..
68a2bcb
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
index
bad65ce
..
6502d90
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
index
916a92c
..
57f5a79
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
index
aa7cbe9
..
181c7a1
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
index
547597d
..
85d0786
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
index
d310ae9
..
89be47b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
index
ff95611
..
da4c5d1
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
index
d28378a
..
bed111c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
index
1efb210
..
6c7c32e
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
index
27ee1c7
..
efa1a5c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
index
0c14ecf
..
7e2a7f8
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
index
60c5b1f
..
1a02167
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
index
81c24ee
..
b199e91
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
index
4595408
..
c6351f9
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
index
e3952dc
..
5ec79c9
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
index
a44445f
..
0b635c0
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
index
c7dc025
..
2fec649
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
index
56f2742
..
7700ed3
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
index
bee6cb2
..
bed150c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
index
9a35b35
..
3fccdc9
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
index
dcdc8e4
..
2f0e09c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
index
8b2aa09
..
c9a9cc2
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
index
ea40444
..
d49e1dd
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
index
80629f8
..
98bd90c
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
index
87c6196
..
395cfb0
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
index
69b4841
..
39089df
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
index
474daad
..
8daae35
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
index
e190888
..
c3306d6
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
index
4cc6bfc
..
0b8fc7b
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
index
00139d4
..
99f76ef
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
index
3e3ee2d
..
ead0e66
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
index
e57d45b
..
99a48cf
100644
(file)
--- a/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
+++ b/
src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/AnnotationColourGradient.java
b/src/jalview/schemes/AnnotationColourGradient.java
index
efad430
..
1422ce5
100755
(executable)
--- a/
src/jalview/schemes/AnnotationColourGradient.java
+++ b/
src/jalview/schemes/AnnotationColourGradient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
41f7781
..
2b16cc9
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/BuriedColourScheme.java
b/src/jalview/schemes/BuriedColourScheme.java
index
e9220b2
..
30e9131
100755
(executable)
--- a/
src/jalview/schemes/BuriedColourScheme.java
+++ b/
src/jalview/schemes/BuriedColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
92d2dd7
..
6eb2ac1
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeI.java
b/src/jalview/schemes/ColourSchemeI.java
index
67d23ea
..
dd1c5be
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeI.java
+++ b/
src/jalview/schemes/ColourSchemeI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ColourSchemeProperty.java
b/src/jalview/schemes/ColourSchemeProperty.java
index
57a2dd9
..
bd40353
100755
(executable)
--- a/
src/jalview/schemes/ColourSchemeProperty.java
+++ b/
src/jalview/schemes/ColourSchemeProperty.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/Consensus.java
b/src/jalview/schemes/Consensus.java
index
1016ccb
..
cccc995
100755
(executable)
--- a/
src/jalview/schemes/Consensus.java
+++ b/
src/jalview/schemes/Consensus.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/CovariationColourScheme.java
b/src/jalview/schemes/CovariationColourScheme.java
index
e0521f4
..
ca81f5f
100644
(file)
--- a/
src/jalview/schemes/CovariationColourScheme.java
+++ b/
src/jalview/schemes/CovariationColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/FollowerColourScheme.java
b/src/jalview/schemes/FollowerColourScheme.java
index
54b0848
..
6996212
100644
(file)
--- a/
src/jalview/schemes/FollowerColourScheme.java
+++ b/
src/jalview/schemes/FollowerColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/GraduatedColor.java
b/src/jalview/schemes/GraduatedColor.java
index
e8bf483
..
8e125cf
100644
(file)
--- a/
src/jalview/schemes/GraduatedColor.java
+++ b/
src/jalview/schemes/GraduatedColor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HelixColourScheme.java
b/src/jalview/schemes/HelixColourScheme.java
index
466ff0b
..
325817c
100755
(executable)
--- a/
src/jalview/schemes/HelixColourScheme.java
+++ b/
src/jalview/schemes/HelixColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/HydrophobicColourScheme.java
b/src/jalview/schemes/HydrophobicColourScheme.java
index
50e297a
..
f3b55a3
100755
(executable)
--- a/
src/jalview/schemes/HydrophobicColourScheme.java
+++ b/
src/jalview/schemes/HydrophobicColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
f32e291
..
4f6c2a6
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PIDColourScheme.java
b/src/jalview/schemes/PIDColourScheme.java
index
bccf964
..
40653c6
100755
(executable)
--- a/
src/jalview/schemes/PIDColourScheme.java
+++ b/
src/jalview/schemes/PIDColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/PurinePyrimidineColourScheme.java
b/src/jalview/schemes/PurinePyrimidineColourScheme.java
index
6bc28ac
..
7e4f568
100644
(file)
--- a/
src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/
src/jalview/schemes/PurinePyrimidineColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColour.java
b/src/jalview/schemes/RNAHelicesColour.java
index
152ad9a
..
583405b
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColour.java
+++ b/
src/jalview/schemes/RNAHelicesColour.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAHelicesColourChooser.java
b/src/jalview/schemes/RNAHelicesColourChooser.java
index
a7bdd8e
..
d6b514e
100644
(file)
--- a/
src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/
src/jalview/schemes/RNAHelicesColourChooser.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/RNAInteractionColourScheme.java
b/src/jalview/schemes/RNAInteractionColourScheme.java
index
6ecc418
..
2be7486
100644
(file)
--- a/
src/jalview/schemes/RNAInteractionColourScheme.java
+++ b/
src/jalview/schemes/RNAInteractionColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueColourScheme.java
b/src/jalview/schemes/ResidueColourScheme.java
index
47b8fbd
..
1064c38
100755
(executable)
--- a/
src/jalview/schemes/ResidueColourScheme.java
+++ b/
src/jalview/schemes/ResidueColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
8acf1f2
..
a531df5
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreColourScheme.java
b/src/jalview/schemes/ScoreColourScheme.java
index
2a377a2
..
442b90b
100755
(executable)
--- a/
src/jalview/schemes/ScoreColourScheme.java
+++ b/
src/jalview/schemes/ScoreColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ScoreMatrix.java
b/src/jalview/schemes/ScoreMatrix.java
index
ac02ee5
..
c75cd0d
100644
(file)
--- a/
src/jalview/schemes/ScoreMatrix.java
+++ b/
src/jalview/schemes/ScoreMatrix.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/StrandColourScheme.java
b/src/jalview/schemes/StrandColourScheme.java
index
e7f8ae8
..
52e3b62
100755
(executable)
--- a/
src/jalview/schemes/StrandColourScheme.java
+++ b/
src/jalview/schemes/StrandColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TCoffeeColourScheme.java
b/src/jalview/schemes/TCoffeeColourScheme.java
index
b5c24ce
..
298c26f
100644
(file)
--- a/
src/jalview/schemes/TCoffeeColourScheme.java
+++ b/
src/jalview/schemes/TCoffeeColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TaylorColourScheme.java
b/src/jalview/schemes/TaylorColourScheme.java
index
59d696d
..
eb42c49
100755
(executable)
--- a/
src/jalview/schemes/TaylorColourScheme.java
+++ b/
src/jalview/schemes/TaylorColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/TurnColourScheme.java
b/src/jalview/schemes/TurnColourScheme.java
index
ce676b4
..
eb393c5
100755
(executable)
--- a/
src/jalview/schemes/TurnColourScheme.java
+++ b/
src/jalview/schemes/TurnColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/UserColourScheme.java
b/src/jalview/schemes/UserColourScheme.java
index
8ca0b86
..
21f6b63
100755
(executable)
--- a/
src/jalview/schemes/UserColourScheme.java
+++ b/
src/jalview/schemes/UserColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/schemes/ZappoColourScheme.java
b/src/jalview/schemes/ZappoColourScheme.java
index
f4aef2a
..
46cfa5d
100755
(executable)
--- a/
src/jalview/schemes/ZappoColourScheme.java
+++ b/
src/jalview/schemes/ZappoColourScheme.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/AlignmentViewPanelListener.java
b/src/jalview/structure/AlignmentViewPanelListener.java
index
ebebc6a
..
6056ded
100644
(file)
--- a/
src/jalview/structure/AlignmentViewPanelListener.java
+++ b/
src/jalview/structure/AlignmentViewPanelListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SecondaryStructureListener.java
b/src/jalview/structure/SecondaryStructureListener.java
index
2402f87
..
3a6ebd5
100644
(file)
--- a/
src/jalview/structure/SecondaryStructureListener.java
+++ b/
src/jalview/structure/SecondaryStructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionListener.java
b/src/jalview/structure/SelectionListener.java
index
ec7aed1
..
0df9c77
100644
(file)
--- a/
src/jalview/structure/SelectionListener.java
+++ b/
src/jalview/structure/SelectionListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SelectionSource.java
b/src/jalview/structure/SelectionSource.java
index
0c54ebf
..
3f7f579
100644
(file)
--- a/
src/jalview/structure/SelectionSource.java
+++ b/
src/jalview/structure/SelectionSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/SequenceListener.java
b/src/jalview/structure/SequenceListener.java
index
83a9fd0
..
f20fecb
100644
(file)
--- a/
src/jalview/structure/SequenceListener.java
+++ b/
src/jalview/structure/SequenceListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureListener.java
b/src/jalview/structure/StructureListener.java
index
8ac002b
..
2698d9d
100644
(file)
--- a/
src/jalview/structure/StructureListener.java
+++ b/
src/jalview/structure/StructureListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMapping.java
b/src/jalview/structure/StructureMapping.java
index
e0033e1
..
874f844
100644
(file)
--- a/
src/jalview/structure/StructureMapping.java
+++ b/
src/jalview/structure/StructureMapping.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureMappingcommandSet.java
b/src/jalview/structure/StructureMappingcommandSet.java
index
0901680
..
d83da5a
100644
(file)
--- a/
src/jalview/structure/StructureMappingcommandSet.java
+++ b/
src/jalview/structure/StructureMappingcommandSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
af00798
..
e9aa575
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasListener.java
b/src/jalview/structure/VamsasListener.java
index
26ebdc1
..
e900014
100644
(file)
--- a/
src/jalview/structure/VamsasListener.java
+++ b/
src/jalview/structure/VamsasListener.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structure/VamsasSource.java
b/src/jalview/structure/VamsasSource.java
index
3c8ec56
..
1ed8d3e
100644
(file)
--- a/
src/jalview/structure/VamsasSource.java
+++ b/
src/jalview/structure/VamsasSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/structures/models/SequenceStructureBindingModel.java
b/src/jalview/structures/models/SequenceStructureBindingModel.java
index
7d023a8
..
40fb8a9
100644
(file)
--- a/
src/jalview/structures/models/SequenceStructureBindingModel.java
+++ b/
src/jalview/structures/models/SequenceStructureBindingModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/AWTConsole.java
b/src/jalview/util/AWTConsole.java
index
871b480
..
3c20c58
100644
(file)
--- a/
src/jalview/util/AWTConsole.java
+++ b/
src/jalview/util/AWTConsole.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/BrowserLauncher.java
b/src/jalview/util/BrowserLauncher.java
index
60e2fed
..
43390db
100755
(executable)
--- a/
src/jalview/util/BrowserLauncher.java
+++ b/
src/jalview/util/BrowserLauncher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ColorUtils.java
b/src/jalview/util/ColorUtils.java
index
fd76086
..
074bc35
100644
(file)
--- a/
src/jalview/util/ColorUtils.java
+++ b/
src/jalview/util/ColorUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Comparison.java
b/src/jalview/util/Comparison.java
index
8931b23
..
9b2edba
100644
(file)
--- a/
src/jalview/util/Comparison.java
+++ b/
src/jalview/util/Comparison.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
4cc888d
..
b7d5559
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Format.java
b/src/jalview/util/Format.java
index
a7b311b
..
d4e3729
100755
(executable)
--- a/
src/jalview/util/Format.java
+++ b/
src/jalview/util/Format.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/GroupUrlLink.java
b/src/jalview/util/GroupUrlLink.java
index
e8af4cd
..
2b5dc74
100644
(file)
--- a/
src/jalview/util/GroupUrlLink.java
+++ b/
src/jalview/util/GroupUrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ImageMaker.java
b/src/jalview/util/ImageMaker.java
index
b410be6
..
252bae1
100755
(executable)
--- a/
src/jalview/util/ImageMaker.java
+++ b/
src/jalview/util/ImageMaker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MapList.java
b/src/jalview/util/MapList.java
index
eb414b9
..
79623df
100644
(file)
--- a/
src/jalview/util/MapList.java
+++ b/
src/jalview/util/MapList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/MessageManager.java
b/src/jalview/util/MessageManager.java
index
cd885f0
..
db2cfec
100644
(file)
--- a/
src/jalview/util/MessageManager.java
+++ b/
src/jalview/util/MessageManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ParseHtmlBodyAndLinks.java
b/src/jalview/util/ParseHtmlBodyAndLinks.java
index
2330cca
..
a937b3b
100644
(file)
--- a/
src/jalview/util/ParseHtmlBodyAndLinks.java
+++ b/
src/jalview/util/ParseHtmlBodyAndLinks.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/Platform.java
b/src/jalview/util/Platform.java
index
21decf3
..
c9907ef
100644
(file)
--- a/
src/jalview/util/Platform.java
+++ b/
src/jalview/util/Platform.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/QuickSort.java
b/src/jalview/util/QuickSort.java
index
e3bb514
..
95c6ded
100755
(executable)
--- a/
src/jalview/util/QuickSort.java
+++ b/
src/jalview/util/QuickSort.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/ShiftList.java
b/src/jalview/util/ShiftList.java
index
2b3a8a4
..
37b2c2d
100644
(file)
--- a/
src/jalview/util/ShiftList.java
+++ b/
src/jalview/util/ShiftList.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/TableSorter.java
b/src/jalview/util/TableSorter.java
index
496ce5a
..
ceaa29d
100755
(executable)
--- a/
src/jalview/util/TableSorter.java
+++ b/
src/jalview/util/TableSorter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/UrlLink.java
b/src/jalview/util/UrlLink.java
index
c716110
..
6d80338
100644
(file)
--- a/
src/jalview/util/UrlLink.java
+++ b/
src/jalview/util/UrlLink.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/util/jarInputStreamProvider.java
b/src/jalview/util/jarInputStreamProvider.java
index
86bf0eb
..
f4b5930
100644
(file)
--- a/
src/jalview/util/jarInputStreamProvider.java
+++ b/
src/jalview/util/jarInputStreamProvider.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/AlignmentViewport.java
b/src/jalview/viewmodel/AlignmentViewport.java
index
1b42faf
..
903b89c
100644
(file)
--- a/
src/jalview/viewmodel/AlignmentViewport.java
+++ b/
src/jalview/viewmodel/AlignmentViewport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/viewmodel/PCAModel.java
b/src/jalview/viewmodel/PCAModel.java
index
2983851
..
f863ade
100644
(file)
--- a/
src/jalview/viewmodel/PCAModel.java
+++ b/
src/jalview/viewmodel/PCAModel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcManager.java
b/src/jalview/workers/AlignCalcManager.java
index
24de71e
..
4f6538b
100644
(file)
--- a/
src/jalview/workers/AlignCalcManager.java
+++ b/
src/jalview/workers/AlignCalcManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/AlignCalcWorker.java
b/src/jalview/workers/AlignCalcWorker.java
index
a54fb83
..
3ed06f1
100644
(file)
--- a/
src/jalview/workers/AlignCalcWorker.java
+++ b/
src/jalview/workers/AlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConsensusThread.java
b/src/jalview/workers/ConsensusThread.java
index
c754ee3
..
a8c33ce
100644
(file)
--- a/
src/jalview/workers/ConsensusThread.java
+++ b/
src/jalview/workers/ConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/ConservationThread.java
b/src/jalview/workers/ConservationThread.java
index
a7180a0
..
d98f42c
100644
(file)
--- a/
src/jalview/workers/ConservationThread.java
+++ b/
src/jalview/workers/ConservationThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/workers/StrucConsensusThread.java
b/src/jalview/workers/StrucConsensusThread.java
index
3230a36
..
6449a2b
100644
(file)
--- a/
src/jalview/workers/StrucConsensusThread.java
+++ b/
src/jalview/workers/StrucConsensusThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWSThread.java
b/src/jalview/ws/AWSThread.java
index
edb56a9
..
42faa11
100644
(file)
--- a/
src/jalview/ws/AWSThread.java
+++ b/
src/jalview/ws/AWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/AWsJob.java
b/src/jalview/ws/AWsJob.java
index
7362f22
..
d8767aa
100644
(file)
--- a/
src/jalview/ws/AWsJob.java
+++ b/
src/jalview/ws/AWsJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DBRefFetcher.java
b/src/jalview/ws/DBRefFetcher.java
index
f5789ea
..
9f8fb82
100644
(file)
--- a/
src/jalview/ws/DBRefFetcher.java
+++ b/
src/jalview/ws/DBRefFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/DasSequenceFeatureFetcher.java
b/src/jalview/ws/DasSequenceFeatureFetcher.java
index
a778ab1
..
d8d2db4
100644
(file)
--- a/
src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/ws/DasSequenceFeatureFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/EnfinEnvision2OneWay.java
b/src/jalview/ws/EnfinEnvision2OneWay.java
index
693c888
..
058d9dd
100644
(file)
--- a/
src/jalview/ws/EnfinEnvision2OneWay.java
+++ b/
src/jalview/ws/EnfinEnvision2OneWay.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/HttpClientUtils.java
b/src/jalview/ws/HttpClientUtils.java
index
229fa4e
..
ed7288f
100644
(file)
--- a/
src/jalview/ws/HttpClientUtils.java
+++ b/
src/jalview/ws/HttpClientUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/JobStateSummary.java
b/src/jalview/ws/JobStateSummary.java
index
d0f6d7d
..
cf625ad
100644
(file)
--- a/
src/jalview/ws/JobStateSummary.java
+++ b/
src/jalview/ws/JobStateSummary.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/SequenceFetcher.java
b/src/jalview/ws/SequenceFetcher.java
index
caf5b5e
..
c182dfa
100644
(file)
--- a/
src/jalview/ws/SequenceFetcher.java
+++ b/
src/jalview/ws/SequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClient.java
b/src/jalview/ws/WSClient.java
index
34b3eb9
..
36f0afe
100755
(executable)
--- a/
src/jalview/ws/WSClient.java
+++ b/
src/jalview/ws/WSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSClientI.java
b/src/jalview/ws/WSClientI.java
index
051d306
..
4bc0295
100755
(executable)
--- a/
src/jalview/ws/WSClientI.java
+++ b/
src/jalview/ws/WSClientI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/WSMenuEntryProviderI.java
b/src/jalview/ws/WSMenuEntryProviderI.java
index
49bc1e0
..
9ac4b4e
100644
(file)
--- a/
src/jalview/ws/WSMenuEntryProviderI.java
+++ b/
src/jalview/ws/WSMenuEntryProviderI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
index
1672381
..
cafef4a
100644
(file)
--- a/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/
src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblCdsSouce.java
b/src/jalview/ws/dbsources/EmblCdsSouce.java
index
a4423b3
..
1499245
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/
src/jalview/ws/dbsources/EmblCdsSouce.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblSource.java
b/src/jalview/ws/dbsources/EmblSource.java
index
e5f0c62
..
89a1196
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblSource.java
+++ b/
src/jalview/ws/dbsources/EmblSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/EmblXmlSource.java
b/src/jalview/ws/dbsources/EmblXmlSource.java
index
ec5c62d
..
2c9aa56
100644
(file)
--- a/
src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/
src/jalview/ws/dbsources/EmblXmlSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/GeneDbSource.java
b/src/jalview/ws/dbsources/GeneDbSource.java
index
6fbc081
..
3523d77
100644
(file)
--- a/
src/jalview/ws/dbsources/GeneDbSource.java
+++ b/
src/jalview/ws/dbsources/GeneDbSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pdb.java
b/src/jalview/ws/dbsources/Pdb.java
index
f222aaa
..
8503167
100644
(file)
--- a/
src/jalview/ws/dbsources/Pdb.java
+++ b/
src/jalview/ws/dbsources/Pdb.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
489db1f
..
b2d3dc9
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamFull.java
b/src/jalview/ws/dbsources/PfamFull.java
index
9b4587e
..
9a92886
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamFull.java
+++ b/
src/jalview/ws/dbsources/PfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/PfamSeed.java
b/src/jalview/ws/dbsources/PfamSeed.java
index
bc12360
..
db34782
100644
(file)
--- a/
src/jalview/ws/dbsources/PfamSeed.java
+++ b/
src/jalview/ws/dbsources/PfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Rfam.java
b/src/jalview/ws/dbsources/Rfam.java
index
3a115f1
..
122ff8d
100644
(file)
--- a/
src/jalview/ws/dbsources/Rfam.java
+++ b/
src/jalview/ws/dbsources/Rfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamFull.java
b/src/jalview/ws/dbsources/RfamFull.java
index
483114c
..
562d9d8
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamFull.java
+++ b/
src/jalview/ws/dbsources/RfamFull.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/RfamSeed.java
b/src/jalview/ws/dbsources/RfamSeed.java
index
1896eb4
..
ab30a85
100644
(file)
--- a/
src/jalview/ws/dbsources/RfamSeed.java
+++ b/
src/jalview/ws/dbsources/RfamSeed.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Uniprot.java
b/src/jalview/ws/dbsources/Uniprot.java
index
359f2b1
..
1cb8e14
100644
(file)
--- a/
src/jalview/ws/dbsources/Uniprot.java
+++ b/
src/jalview/ws/dbsources/Uniprot.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/UnprotName.java
b/src/jalview/ws/dbsources/UnprotName.java
index
2f65b12
..
28d2a6c
100644
(file)
--- a/
src/jalview/ws/dbsources/UnprotName.java
+++ b/
src/jalview/ws/dbsources/UnprotName.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/Xfam.java
b/src/jalview/ws/dbsources/Xfam.java
index
d76bbb5
..
d06151b
100644
(file)
--- a/
src/jalview/ws/dbsources/Xfam.java
+++ b/
src/jalview/ws/dbsources/Xfam.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
index
622bf06
..
bfc4f6f
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
+++ b/
src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
index
681faa4
..
7966d77
100644
(file)
--- a/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/
src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index
cb5705e
..
3ad3573
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
index
08e14e8
..
88d9db1
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
index
c994fd5
..
f8efb49
100644
(file)
--- a/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/
src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/ebi/EBIFetchClient.java
b/src/jalview/ws/ebi/EBIFetchClient.java
index
fe9e28f
..
9397c0e
100644
(file)
--- a/
src/jalview/ws/ebi/EBIFetchClient.java
+++ b/
src/jalview/ws/ebi/EBIFetchClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/HttpContentHandler.java
b/src/jalview/ws/io/mime/HttpContentHandler.java
index
4b53cf6
..
1e37fb6
100644
(file)
--- a/
src/jalview/ws/io/mime/HttpContentHandler.java
+++ b/
src/jalview/ws/io/mime/HttpContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
index
3675a7f
..
8fef8da
100644
(file)
--- a/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/
src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/io/mime/MimeTypes.java
b/src/jalview/ws/io/mime/MimeTypes.java
index
40248cf
..
872eec7
100644
(file)
--- a/
src/jalview/ws/io/mime/MimeTypes.java
+++ b/
src/jalview/ws/io/mime/MimeTypes.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/Annotate3D.java
b/src/jalview/ws/jws1/Annotate3D.java
index
4502b39
..
509d4ae
100644
(file)
--- a/
src/jalview/ws/jws1/Annotate3D.java
+++ b/
src/jalview/ws/jws1/Annotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/Discoverer.java
b/src/jalview/ws/jws1/Discoverer.java
index
629b3d6
..
7cb0481
100644
(file)
--- a/
src/jalview/ws/jws1/Discoverer.java
+++ b/
src/jalview/ws/jws1/Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredClient.java
b/src/jalview/ws/jws1/JPredClient.java
index
df0e091
..
ff2432f
100644
(file)
--- a/
src/jalview/ws/jws1/JPredClient.java
+++ b/
src/jalview/ws/jws1/JPredClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JPredThread.java
b/src/jalview/ws/jws1/JPredThread.java
index
4e95b14
..
0fdc3ff
100644
(file)
--- a/
src/jalview/ws/jws1/JPredThread.java
+++ b/
src/jalview/ws/jws1/JPredThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/JWS1Thread.java
b/src/jalview/ws/jws1/JWS1Thread.java
index
161a022
..
6810f4e
100644
(file)
--- a/
src/jalview/ws/jws1/JWS1Thread.java
+++ b/
src/jalview/ws/jws1/JWS1Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSClient.java
b/src/jalview/ws/jws1/MsaWSClient.java
index
5d84286
..
1a833ee
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSClient.java
+++ b/
src/jalview/ws/jws1/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/MsaWSThread.java
b/src/jalview/ws/jws1/MsaWSThread.java
index
a6ba751
..
44359cf
100644
(file)
--- a/
src/jalview/ws/jws1/MsaWSThread.java
+++ b/
src/jalview/ws/jws1/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSClient.java
b/src/jalview/ws/jws1/SeqSearchWSClient.java
index
c1935b4
..
5ffe36e
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/SeqSearchWSThread.java
b/src/jalview/ws/jws1/SeqSearchWSThread.java
index
7c2ea49
..
d920e37
100644
(file)
--- a/
src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/
src/jalview/ws/jws1/SeqSearchWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WS1Client.java
b/src/jalview/ws/jws1/WS1Client.java
index
9001c61
..
747a7f7
100644
(file)
--- a/
src/jalview/ws/jws1/WS1Client.java
+++ b/
src/jalview/ws/jws1/WS1Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws1/WSJob.java
b/src/jalview/ws/jws1/WSJob.java
index
d687368
..
0cf7c45
100644
(file)
--- a/
src/jalview/ws/jws1/WSJob.java
+++ b/
src/jalview/ws/jws1/WSJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AAConClient.java
b/src/jalview/ws/jws2/AAConClient.java
index
66338b1
..
3f5fc60
100644
(file)
--- a/
src/jalview/ws/jws2/AAConClient.java
+++ b/
src/jalview/ws/jws2/AAConClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AADisorderClient.java
b/src/jalview/ws/jws2/AADisorderClient.java
index
6c438be
..
81bd638
100644
(file)
--- a/
src/jalview/ws/jws2/AADisorderClient.java
+++ b/
src/jalview/ws/jws2/AADisorderClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/AWS2Thread.java
b/src/jalview/ws/jws2/AWS2Thread.java
index
16f943c
..
0307933
100644
(file)
--- a/
src/jalview/ws/jws2/AWS2Thread.java
+++ b/
src/jalview/ws/jws2/AWS2Thread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JPred301Client.java
b/src/jalview/ws/jws2/JPred301Client.java
index
8328d45
..
7d7eb91
100644
(file)
--- a/
src/jalview/ws/jws2/JPred301Client.java
+++ b/
src/jalview/ws/jws2/JPred301Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JWs2Job.java
b/src/jalview/ws/jws2/JWs2Job.java
index
aeb2626
..
ea0382b
100644
(file)
--- a/
src/jalview/ws/jws2/JWs2Job.java
+++ b/
src/jalview/ws/jws2/JWs2Job.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaParamStore.java
b/src/jalview/ws/jws2/JabaParamStore.java
index
7c0eabd
..
19af7b8
100644
(file)
--- a/
src/jalview/ws/jws2/JabaParamStore.java
+++ b/
src/jalview/ws/jws2/JabaParamStore.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaPreset.java
b/src/jalview/ws/jws2/JabaPreset.java
index
c47c63a
..
22965cf
100644
(file)
--- a/
src/jalview/ws/jws2/JabaPreset.java
+++ b/
src/jalview/ws/jws2/JabaPreset.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabaWsServerQuery.java
b/src/jalview/ws/jws2/JabaWsServerQuery.java
index
b3aee55
..
70a3475
100644
(file)
--- a/
src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/
src/jalview/ws/jws2/JabaWsServerQuery.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabawsCalcWorker.java
b/src/jalview/ws/jws2/JabawsCalcWorker.java
index
e01c648
..
b44f533
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
index
3f0e47d
..
679ecf7
100644
(file)
--- a/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
+++ b/
src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Client.java
b/src/jalview/ws/jws2/Jws2Client.java
index
751d330
..
fd116c2
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Client.java
+++ b/
src/jalview/ws/jws2/Jws2Client.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/Jws2Discoverer.java
b/src/jalview/ws/jws2/Jws2Discoverer.java
index
7a8eee9
..
dbcecec
100644
(file)
--- a/
src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/
src/jalview/ws/jws2/Jws2Discoverer.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSClient.java
b/src/jalview/ws/jws2/MsaWSClient.java
index
e7301a6
..
49a3412
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSClient.java
+++ b/
src/jalview/ws/jws2/MsaWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/MsaWSThread.java
b/src/jalview/ws/jws2/MsaWSThread.java
index
2bae428
..
d2bb897
100644
(file)
--- a/
src/jalview/ws/jws2/MsaWSThread.java
+++ b/
src/jalview/ws/jws2/MsaWSThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/ParameterUtils.java
b/src/jalview/ws/jws2/ParameterUtils.java
index
8916be9
..
8437929
100644
(file)
--- a/
src/jalview/ws/jws2/ParameterUtils.java
+++ b/
src/jalview/ws/jws2/ParameterUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/RNAalifoldClient.java
b/src/jalview/ws/jws2/RNAalifoldClient.java
index
253a797
..
b3000b3
100644
(file)
--- a/
src/jalview/ws/jws2/RNAalifoldClient.java
+++ b/
src/jalview/ws/jws2/RNAalifoldClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
index
3976678
..
206747a
100644
(file)
--- a/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/
src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/AAConSettings.java
b/src/jalview/ws/jws2/dm/AAConSettings.java
index
e78172e
..
1d30cc7
100644
(file)
--- a/
src/jalview/ws/jws2/dm/AAConSettings.java
+++ b/
src/jalview/ws/jws2/dm/AAConSettings.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaOption.java
b/src/jalview/ws/jws2/dm/JabaOption.java
index
995af35
..
5af8a20
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaOption.java
+++ b/
src/jalview/ws/jws2/dm/JabaOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaParameter.java
b/src/jalview/ws/jws2/dm/JabaParameter.java
index
dac8648
..
4c71896
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/
src/jalview/ws/jws2/dm/JabaParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
index
920b73e
..
14113b6
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/
src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
index
d6d1d5c
..
80d9b47
100644
(file)
--- a/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/
src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
index
120ce27
..
7715dff
100644
(file)
--- a/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/
src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
index
696dba3
..
e30488c
100644
(file)
--- a/
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
+++ b/
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ArgumentI.java
b/src/jalview/ws/params/ArgumentI.java
index
b2a247f
..
0d84bde
100644
(file)
--- a/
src/jalview/ws/params/ArgumentI.java
+++ b/
src/jalview/ws/params/ArgumentI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/AutoCalcSetting.java
b/src/jalview/ws/params/AutoCalcSetting.java
index
fe7c4a0
..
5cd03d1
100644
(file)
--- a/
src/jalview/ws/params/AutoCalcSetting.java
+++ b/
src/jalview/ws/params/AutoCalcSetting.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/InvalidArgumentException.java
b/src/jalview/ws/params/InvalidArgumentException.java
index
f2adbd2
..
d01a253
100644
(file)
--- a/
src/jalview/ws/params/InvalidArgumentException.java
+++ b/
src/jalview/ws/params/InvalidArgumentException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/OptionI.java
b/src/jalview/ws/params/OptionI.java
index
17e2f01
..
b87d775
100644
(file)
--- a/
src/jalview/ws/params/OptionI.java
+++ b/
src/jalview/ws/params/OptionI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamDatastoreI.java
b/src/jalview/ws/params/ParamDatastoreI.java
index
0d653af
..
85c0713
100644
(file)
--- a/
src/jalview/ws/params/ParamDatastoreI.java
+++ b/
src/jalview/ws/params/ParamDatastoreI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParamManager.java
b/src/jalview/ws/params/ParamManager.java
index
60bee66
..
4510ec2
100644
(file)
--- a/
src/jalview/ws/params/ParamManager.java
+++ b/
src/jalview/ws/params/ParamManager.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ParameterI.java
b/src/jalview/ws/params/ParameterI.java
index
0dd3b0c
..
8b9d760
100644
(file)
--- a/
src/jalview/ws/params/ParameterI.java
+++ b/
src/jalview/ws/params/ParameterI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/ValueConstrainI.java
b/src/jalview/ws/params/ValueConstrainI.java
index
eaba0a4
..
a67abcd
100644
(file)
--- a/
src/jalview/ws/params/ValueConstrainI.java
+++ b/
src/jalview/ws/params/ValueConstrainI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/WsParamSetI.java
b/src/jalview/ws/params/WsParamSetI.java
index
2dc2c71
..
a4bf6c1
100644
(file)
--- a/
src/jalview/ws/params/WsParamSetI.java
+++ b/
src/jalview/ws/params/WsParamSetI.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/BooleanOption.java
b/src/jalview/ws/params/simple/BooleanOption.java
index
d0ae16a
..
b69da25
100644
(file)
--- a/
src/jalview/ws/params/simple/BooleanOption.java
+++ b/
src/jalview/ws/params/simple/BooleanOption.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/IntegerParameter.java
b/src/jalview/ws/params/simple/IntegerParameter.java
index
7a13b41
..
3d50a6a
100644
(file)
--- a/
src/jalview/ws/params/simple/IntegerParameter.java
+++ b/
src/jalview/ws/params/simple/IntegerParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Option.java
b/src/jalview/ws/params/simple/Option.java
index
5378dbd
..
22f4d2a
100644
(file)
--- a/
src/jalview/ws/params/simple/Option.java
+++ b/
src/jalview/ws/params/simple/Option.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/Parameter.java
b/src/jalview/ws/params/simple/Parameter.java
index
7bd64be
..
5a0cb1b
100644
(file)
--- a/
src/jalview/ws/params/simple/Parameter.java
+++ b/
src/jalview/ws/params/simple/Parameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/params/simple/StringChoiceParameter.java
b/src/jalview/ws/params/simple/StringChoiceParameter.java
index
399441f
..
918e408
100644
(file)
--- a/
src/jalview/ws/params/simple/StringChoiceParameter.java
+++ b/
src/jalview/ws/params/simple/StringChoiceParameter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/AlignmentProcessor.java
b/src/jalview/ws/rest/AlignmentProcessor.java
index
da583fd
..
52d5838
100644
(file)
--- a/
src/jalview/ws/rest/AlignmentProcessor.java
+++ b/
src/jalview/ws/rest/AlignmentProcessor.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/HttpResultSet.java
b/src/jalview/ws/rest/HttpResultSet.java
index
5af6b32
..
24e9174
100644
(file)
--- a/
src/jalview/ws/rest/HttpResultSet.java
+++ b/
src/jalview/ws/rest/HttpResultSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/InputType.java
b/src/jalview/ws/rest/InputType.java
index
c3faf9d
..
dc4a30c
100644
(file)
--- a/
src/jalview/ws/rest/InputType.java
+++ b/
src/jalview/ws/rest/InputType.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/NoValidInputDataException.java
b/src/jalview/ws/rest/NoValidInputDataException.java
index
69fe7f2
..
8236aab
100644
(file)
--- a/
src/jalview/ws/rest/NoValidInputDataException.java
+++ b/
src/jalview/ws/rest/NoValidInputDataException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestClient.java
b/src/jalview/ws/rest/RestClient.java
index
5ce1d5d
..
41713f1
100644
(file)
--- a/
src/jalview/ws/rest/RestClient.java
+++ b/
src/jalview/ws/rest/RestClient.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJob.java
b/src/jalview/ws/rest/RestJob.java
index
c4afd0c
..
f080127
100644
(file)
--- a/
src/jalview/ws/rest/RestJob.java
+++ b/
src/jalview/ws/rest/RestJob.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestJobThread.java
b/src/jalview/ws/rest/RestJobThread.java
index
738d5dd
..
951825a
100644
(file)
--- a/
src/jalview/ws/rest/RestJobThread.java
+++ b/
src/jalview/ws/rest/RestJobThread.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/RestServiceDescription.java
b/src/jalview/ws/rest/RestServiceDescription.java
index
6f304a9
..
9c39b37
100644
(file)
--- a/
src/jalview/ws/rest/RestServiceDescription.java
+++ b/
src/jalview/ws/rest/RestServiceDescription.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Alignment.java
b/src/jalview/ws/rest/params/Alignment.java
index
e6905ee
..
1340e34
100644
(file)
--- a/
src/jalview/ws/rest/params/Alignment.java
+++ b/
src/jalview/ws/rest/params/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/AnnotationFile.java
b/src/jalview/ws/rest/params/AnnotationFile.java
index
0268c35
..
1926791
100644
(file)
--- a/
src/jalview/ws/rest/params/AnnotationFile.java
+++ b/
src/jalview/ws/rest/params/AnnotationFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/JobConstant.java
b/src/jalview/ws/rest/params/JobConstant.java
index
0bade86
..
7e8a141
100644
(file)
--- a/
src/jalview/ws/rest/params/JobConstant.java
+++ b/
src/jalview/ws/rest/params/JobConstant.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index
70686c5
..
2479e76
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqIdVector.java
b/src/jalview/ws/rest/params/SeqIdVector.java
index
cee0ce2
..
3dfa3c9
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqIdVector.java
+++ b/
src/jalview/ws/rest/params/SeqIdVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/SeqVector.java
b/src/jalview/ws/rest/params/SeqVector.java
index
ff33bb5
..
d331de4
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqVector.java
+++ b/
src/jalview/ws/rest/params/SeqVector.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/rest/params/Tree.java
b/src/jalview/ws/rest/params/Tree.java
index
2c58ed8
..
5d281bd
100644
(file)
--- a/
src/jalview/ws/rest/params/Tree.java
+++ b/
src/jalview/ws/rest/params/Tree.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index
ba7e062
..
4d182cd
100644
(file)
--- a/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/
src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxy.java
b/src/jalview/ws/seqfetcher/DbSourceProxy.java
index
c45a465
..
c6d9e94
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxy.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
index
120f1b2
..
aa5f0da
100644
(file)
--- a/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/
src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/jalview/ws/uimodel/AlignAnalysisUIText.java
b/src/jalview/ws/uimodel/AlignAnalysisUIText.java
index
d937f15
..
1a82396
100644
(file)
--- a/
src/jalview/ws/uimodel/AlignAnalysisUIText.java
+++ b/
src/jalview/ws/uimodel/AlignAnalysisUIText.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsDocument.java
b/src/org/jibble/epsgraphics/EpsDocument.java
index
617542f
..
c739675
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsDocument.java
+++ b/
src/org/jibble/epsgraphics/EpsDocument.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsException.java
b/src/org/jibble/epsgraphics/EpsException.java
index
68147da
..
60cbd79
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsException.java
+++ b/
src/org/jibble/epsgraphics/EpsException.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/org/jibble/epsgraphics/EpsGraphics2D.java
b/src/org/jibble/epsgraphics/EpsGraphics2D.java
index
ca1b304
..
e90cab1
100755
(executable)
--- a/
src/org/jibble/epsgraphics/EpsGraphics2D.java
+++ b/
src/org/jibble/epsgraphics/EpsGraphics2D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference.java
b/src/uk/ac/ebi/picr/model/CrossReference.java
index
b181d55
..
c516ba6
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
index
f119d96
..
f58f964
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry.java
b/src/uk/ac/ebi/picr/model/UPEntry.java
index
6dd4a03
..
389d47e
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
index
a45d8ce
..
c9c2c2f
100644
(file)
--- a/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/
src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/Data.java
b/src/uk/ac/ebi/www/Data.java
index
77e7438
..
2946dba
100755
(executable)
--- a/
src/uk/ac/ebi/www/Data.java
+++ b/
src/uk/ac/ebi/www/Data.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/InputParams.java
b/src/uk/ac/ebi/www/InputParams.java
index
c95ba3c
..
b5fa5b5
100755
(executable)
--- a/
src/uk/ac/ebi/www/InputParams.java
+++ b/
src/uk/ac/ebi/www/InputParams.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSFile.java
b/src/uk/ac/ebi/www/WSFile.java
index
3a3b57e
..
8c56ecd
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSFile.java
+++ b/
src/uk/ac/ebi/www/WSFile.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlast.java
b/src/uk/ac/ebi/www/WSWUBlast.java
index
9bd24ef
..
6b6bf4c
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlast.java
+++ b/
src/uk/ac/ebi/www/WSWUBlast.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastService.java
b/src/uk/ac/ebi/www/WSWUBlastService.java
index
1ca8782
..
40acf53
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
index
2dcbe26
..
f27d6d8
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
index
fe4e4c5
..
b7a0b2e
100755
(executable)
--- a/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index
25d1fdd
..
4e3d516
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
index
09cbf21
..
34b8de5
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
index
03c3ea3
..
fc852e5
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
index
855c1fe
..
62b0706
100644
(file)
--- a/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/
src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/IMsaWS.java
b/src/vamsas/IMsaWS.java
index
5012168
..
bcf40cf
100755
(executable)
--- a/
src/vamsas/IMsaWS.java
+++ b/
src/vamsas/IMsaWS.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment.java
b/src/vamsas/objects/simple/Alignment.java
index
ad004b0
..
0478fa1
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment.java
+++ b/
src/vamsas/objects/simple/Alignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Alignment_Helper.java
b/src/vamsas/objects/simple/Alignment_Helper.java
index
a53d579
..
1233a50
100755
(executable)
--- a/
src/vamsas/objects/simple/Alignment_Helper.java
+++ b/
src/vamsas/objects/simple/Alignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult.java
b/src/vamsas/objects/simple/JpredResult.java
index
e0d7021
..
9eed848
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult.java
+++ b/
src/vamsas/objects/simple/JpredResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/JpredResult_Helper.java
b/src/vamsas/objects/simple/JpredResult_Helper.java
index
db902c7
..
41572c1
100755
(executable)
--- a/
src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/
src/vamsas/objects/simple/JpredResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult.java
b/src/vamsas/objects/simple/MsaResult.java
index
99cab57
..
a142820
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult.java
+++ b/
src/vamsas/objects/simple/MsaResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/MsaResult_Helper.java
b/src/vamsas/objects/simple/MsaResult_Helper.java
index
b607bfb
..
078bdc3
100755
(executable)
--- a/
src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/
src/vamsas/objects/simple/MsaResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment.java
b/src/vamsas/objects/simple/Msfalignment.java
index
03cb186
..
1f3e152
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment.java
+++ b/
src/vamsas/objects/simple/Msfalignment.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Msfalignment_Helper.java
b/src/vamsas/objects/simple/Msfalignment_Helper.java
index
547eb3d
..
1fdd5a6
100755
(executable)
--- a/
src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/
src/vamsas/objects/simple/Msfalignment_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object.java
b/src/vamsas/objects/simple/Object.java
index
c66e7d3
..
d6fcc11
100755
(executable)
--- a/
src/vamsas/objects/simple/Object.java
+++ b/
src/vamsas/objects/simple/Object.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Object_Helper.java
b/src/vamsas/objects/simple/Object_Helper.java
index
6c84b04
..
02b2484
100755
(executable)
--- a/
src/vamsas/objects/simple/Object_Helper.java
+++ b/
src/vamsas/objects/simple/Object_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result.java
b/src/vamsas/objects/simple/Result.java
index
7c09741
..
553f808
100755
(executable)
--- a/
src/vamsas/objects/simple/Result.java
+++ b/
src/vamsas/objects/simple/Result.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Result_Helper.java
b/src/vamsas/objects/simple/Result_Helper.java
index
a9a0a37
..
5da5537
100755
(executable)
--- a/
src/vamsas/objects/simple/Result_Helper.java
+++ b/
src/vamsas/objects/simple/Result_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred.java
b/src/vamsas/objects/simple/Secstructpred.java
index
9ec9294
..
a9bdeda
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred.java
+++ b/
src/vamsas/objects/simple/Secstructpred.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Secstructpred_Helper.java
b/src/vamsas/objects/simple/Secstructpred_Helper.java
index
7980d9d
..
a0cbb3a
100755
(executable)
--- a/
src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/
src/vamsas/objects/simple/Secstructpred_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult.java
b/src/vamsas/objects/simple/SeqSearchResult.java
index
6e878a3
..
0075416
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
index
a4ae4b8
..
85ced17
100644
(file)
--- a/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/
src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence.java
b/src/vamsas/objects/simple/Sequence.java
index
52770ad
..
0d7c8b9
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence.java
+++ b/
src/vamsas/objects/simple/Sequence.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet.java
b/src/vamsas/objects/simple/SequenceSet.java
index
d72419f
..
be8e36c
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet.java
+++ b/
src/vamsas/objects/simple/SequenceSet.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/SequenceSet_Helper.java
b/src/vamsas/objects/simple/SequenceSet_Helper.java
index
6f6b042
..
a2a54ca
100755
(executable)
--- a/
src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/
src/vamsas/objects/simple/SequenceSet_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/Sequence_Helper.java
b/src/vamsas/objects/simple/Sequence_Helper.java
index
116ae42
..
005c2c2
100755
(executable)
--- a/
src/vamsas/objects/simple/Sequence_Helper.java
+++ b/
src/vamsas/objects/simple/Sequence_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId.java
b/src/vamsas/objects/simple/WsJobId.java
index
ba514f5
..
d032116
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId.java
+++ b/
src/vamsas/objects/simple/WsJobId.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/src/vamsas/objects/simple/WsJobId_Helper.java
b/src/vamsas/objects/simple/WsJobId_Helper.java
index
363189a
..
f30c85f
100755
(executable)
--- a/
src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/
src/vamsas/objects/simple/WsJobId_Helper.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/AlignmentUtilsTests.java
b/test/jalview/analysis/AlignmentUtilsTests.java
index
18b4252
..
f8b0e5b
100644
(file)
--- a/
test/jalview/analysis/AlignmentUtilsTests.java
+++ b/
test/jalview/analysis/AlignmentUtilsTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/DnaTranslation.java
b/test/jalview/analysis/DnaTranslation.java
index
708ee21
..
682acf1
100644
(file)
--- a/
test/jalview/analysis/DnaTranslation.java
+++ b/
test/jalview/analysis/DnaTranslation.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/analysis/TestAlignSeq.java
b/test/jalview/analysis/TestAlignSeq.java
index
ca4f18d
..
c6a24b4
100644
(file)
--- a/
test/jalview/analysis/TestAlignSeq.java
+++ b/
test/jalview/analysis/TestAlignSeq.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/bin/CommandLineOperations.java
b/test/jalview/bin/CommandLineOperations.java
index
b86eebd
..
1c3714a
100644
(file)
--- a/
test/jalview/bin/CommandLineOperations.java
+++ b/
test/jalview/bin/CommandLineOperations.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
index
7bcf902
..
c0643c5
100644
(file)
--- a/
test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/
test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ext/paradise/TestAnnotate3D.java
b/test/jalview/ext/paradise/TestAnnotate3D.java
index
a7c439f
..
9212f1a
100644
(file)
--- a/
test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/
test/jalview/ext/paradise/TestAnnotate3D.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/gui/JAL1353bugdemo.java
b/test/jalview/gui/JAL1353bugdemo.java
index
7acd843
..
55cf0f5
100644
(file)
--- a/
test/jalview/gui/JAL1353bugdemo.java
+++ b/
test/jalview/gui/JAL1353bugdemo.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/AnnotationFileIOTest.java
b/test/jalview/io/AnnotationFileIOTest.java
index
18e008e
..
d09eb2a
100644
(file)
--- a/
test/jalview/io/AnnotationFileIOTest.java
+++ b/
test/jalview/io/AnnotationFileIOTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/FileIOTester.java
b/test/jalview/io/FileIOTester.java
index
7f0e72f
..
926b908
100644
(file)
--- a/
test/jalview/io/FileIOTester.java
+++ b/
test/jalview/io/FileIOTester.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/Jalview2xmlTests.java
b/test/jalview/io/Jalview2xmlTests.java
index
75626e9
..
7dcba1a
100644
(file)
--- a/
test/jalview/io/Jalview2xmlTests.java
+++ b/
test/jalview/io/Jalview2xmlTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/NewickFileTests.java
b/test/jalview/io/NewickFileTests.java
index
07672c8
..
cef4180
100644
(file)
--- a/
test/jalview/io/NewickFileTests.java
+++ b/
test/jalview/io/NewickFileTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/RNAMLfileTest.java
b/test/jalview/io/RNAMLfileTest.java
index
f5b0258
..
45ba993
100644
(file)
--- a/
test/jalview/io/RNAMLfileTest.java
+++ b/
test/jalview/io/RNAMLfileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/StockholmFileTest.java
b/test/jalview/io/StockholmFileTest.java
index
cf61e6e
..
00cbbb9
100644
(file)
--- a/
test/jalview/io/StockholmFileTest.java
+++ b/
test/jalview/io/StockholmFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/io/TCoffeeScoreFileTest.java
b/test/jalview/io/TCoffeeScoreFileTest.java
index
2558989
..
09e9e8e
100644
(file)
--- a/
test/jalview/io/TCoffeeScoreFileTest.java
+++ b/
test/jalview/io/TCoffeeScoreFileTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/schemes/DnaCodonTests.java
b/test/jalview/schemes/DnaCodonTests.java
index
d8529f8
..
dc80fac
100644
(file)
--- a/
test/jalview/schemes/DnaCodonTests.java
+++ b/
test/jalview/schemes/DnaCodonTests.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/schemes/ScoreMatrixPrinter.java
b/test/jalview/schemes/ScoreMatrixPrinter.java
index
88d234e
..
4265eae
100644
(file)
--- a/
test/jalview/schemes/ScoreMatrixPrinter.java
+++ b/
test/jalview/schemes/ScoreMatrixPrinter.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/PDBSequenceFetcherTest.java
b/test/jalview/ws/PDBSequenceFetcherTest.java
index
775adf7
..
ea5f27f
100644
(file)
--- a/
test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/
test/jalview/ws/PDBSequenceFetcherTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/gui/Jws2ParamView.java
b/test/jalview/ws/gui/Jws2ParamView.java
index
1e72fae
..
125f86d
100644
(file)
--- a/
test/jalview/ws/gui/Jws2ParamView.java
+++ b/
test/jalview/ws/gui/Jws2ParamView.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
index
db7d505
..
d488b44
100644
(file)
--- a/
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
+++ b/
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
b/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
index
c206323
..
fb73c10
100644
(file)
--- a/
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
+++ b/
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
index
f0b8f99
..
3c84212
100644
(file)
--- a/
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/jabaws/RNAStructExportImport.java
b/test/jalview/ws/jabaws/RNAStructExportImport.java
index
9a723ca
..
57cbd50
100644
(file)
--- a/
test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/
test/jalview/ws/jabaws/RNAStructExportImport.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/rest/ShmmrRSBSService.java
b/test/jalview/ws/rest/ShmmrRSBSService.java
index
6f111d0
..
7a56045
100644
(file)
--- a/
test/jalview/ws/rest/ShmmrRSBSService.java
+++ b/
test/jalview/ws/rest/ShmmrRSBSService.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index
785ca42
..
8a18494
100644
(file)
--- a/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/InstallAnywhere/jalview_buildinstaller.xml
b/utils/InstallAnywhere/jalview_buildinstaller.xml
index
de1e865
..
26ad796
100644
(file)
--- a/
utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/
utils/InstallAnywhere/jalview_buildinstaller.xml
@@
-1,6
+1,6
@@
<?xml version="1.0"?>
<!--
<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/eclipse/JalviewCodeStyle.xml
b/utils/eclipse/JalviewCodeStyle.xml
index
fc961f7
..
cf492dd
100644
(file)
--- a/
utils/eclipse/JalviewCodeStyle.xml
+++ b/
utils/eclipse/JalviewCodeStyle.xml
@@
-1,6
+1,6
@@
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/getJavaVersion.java
b/utils/getJavaVersion.java
index
de27673
..
a525b3f
100644
(file)
--- a/
utils/getJavaVersion.java
+++ b/
utils/getJavaVersion.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/gff2annot.pl
b/utils/gff2annot.pl
index
40fe25f
..
59ee580
100755
(executable)
--- a/
utils/gff2annot.pl
+++ b/
utils/gff2annot.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/help2Website.java
b/utils/help2Website.java
index
ef174c4
..
d3d6692
100755
(executable)
--- a/
utils/help2Website.java
+++ b/
utils/help2Website.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
diff --git
a/utils/jarunsigner.pl
b/utils/jarunsigner.pl
index
53e0413
..
1d37502
100755
(executable)
--- a/
utils/jarunsigner.pl
+++ b/
utils/jarunsigner.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/patchGt.pl
b/utils/patchGt.pl
index
ef7b4db
..
a4e7439
100644
(file)
--- a/
utils/patchGt.pl
+++ b/
utils/patchGt.pl
@@
-1,6
+1,6
@@
#!/bin/perl
##
#!/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
diff --git
a/utils/splitstockholm.pl
b/utils/splitstockholm.pl
index
76ff05b
..
f78a55a
100644
(file)
--- a/
utils/splitstockholm.pl
+++ b/
utils/splitstockholm.pl
@@
-1,6
+1,6
@@
#!/usr/bin/perl
##
#!/usr/bin/perl
##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.
# Copyright (C) 2014 The Jalview Authors
#
# This file is part of Jalview.